Cucsa.235530 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.235530
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	tRNA 2-thiocytidine biosynthesis TtcA
Location	scaffold02012 : 70363 .. 73196 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGTGTGAGAATTCGATAATTTCATAAATTGAAAGGATAATTTGGCGGAGGAAACAGTGACGTTGTGGTGTGGAGAGGAAAATAAGAGGCGGTCCGGTGTCCAACAACTCTTGTGGCGGCTATTTGATTTTGGTGGAATCGGCCACCCGGAGATTCAGTAACACTCCAGCCGTCACCTCAGGAAACGGGAAGTTCATGGCGTCGATATCCTTTTTAACCTCTAAAACCCTAGTCTTACCATCGGTGACCTACCTACCACTATCTTCTTCTTCGTCTTCATCTACAACGCATAGTTGCTGTCTTGGTGGCTGCATATGCTCCTTCCCAATCAACCCGATTTCTACTTCTAATTTGATTTTTGGTAGAAGGAGAACGGGGAGGCAGGTGGTCCGAATGGCCCCGGATGAAGAGAAGCTCACTCGTCGCAATCCTCTCGATTTCCCAGTTGTATCTTTCTCACTCCTTTCCTCCTTTTTCTTTTTtCCTGCAGCATTTTATGTTTTTTGTCTTGCAATGGAGTTCTTTTTtATGAGATTTGGTGCTTTTGCTTCCCGTTTTTAATTACTTTTGCTACTGTACCCCTAGATTGCTTGGGGGTGGATAATTGAAGCATTTCTAGGAATTGTTATAGTTAGTGATAAATTTTTATCTATGAAGGTTTTAGAAGGCTTATTCGGGAGTTATCTTGCCACGTTTTTCCTGCAAATTATATCTGCCTGCTTGTTTCTGCTATGTCTGGATTTTAGTTGTTAAACTTAGATTGGTAGAAGTTATTGGCAGTCCTCAAGGCATTTTATTGAAGATCCCACGTTGGGAAAAAAAaCAAGGGACCTCAAATCTCATTAAGTAGATGGGTTACTCAAATCTTTGTTATCCAATACGATATTTGTCCATGAAGTTCAAACGGGCATTTGGTCCAAAATAAAAAaTTGGGATCTGACCCAAGAATGGCGAACCCAAGGAAACACTATCTTGAGGGGCATATTGAGGATCTTACATAGAAAAAATCTGAGAGACTTCACAACTTCAATAAGACAAATGACTTATCTTATTGTCAATTGGTTTTGAGGTAAAACTTTATGTTATCTAATGCGTTTGTGTGGCAGTTCATAGGGCTGGTGCAGTCTCTTTGAGGCATTTGATGCAACTTTGTCAGTTTGCAAGGTGGTCGGGAATCAATTGAGAGAAGTTGCTCTGTCATCCTCCTTTTCAAGAGAAAGAACCATTGTATGTGACAAGCTGCAGATGTGCCATTTGGTGGCATCTTTGGTCCAGAGAAATAGTAGAAGTTTCAGGGAGAGGAGAATTTTCACAGGGACGTTTGAGACCTTGTTAGATTCTATGACCTTGGTGTCCATATCTTTTTCTAATTACCCATTGAGTTACACTTTACTTGATTGGAGCCCCCTCATTTTTGTACGCTCCTCCTTTTTtGATGCTAGTACATTTTTTCACTTTTTTTtCTCAAATAAAAGGATACGCCAGATGTCATGAATGTTTGTGTTAGGACTCTTCCCCCTGCACACAGAAAATCCCAATAACAATATAGAAACAGAGATGGTACTTTGGATATTTATATATCACTATCAACCAGAAAGTGATCGCAATGATAATCCAGAACAAAAGAAAACAATAACAACAAGATAAGAAAATGATAGTAAAGGACTCCTGGCAATTTGAGAAGCTGGCTCTCTCCCTAAAAGCTCTCAGCAGCTTTTCCCAAAAATATAACCTACCTCATCATTCCCTAAAAACATTCCTTAAGTACCTCCATTCCCTTGGTAGGACCTCTCCAAGATATTCCTTTCATTTATTTATATGGGCCGAGCTGTCTTCTTGAACATTCTCTTTTTTACCCTTCCGTTTGTAGGTATGTATGATAGGAGGTCTAACAGTTTGTTGGGTAATTTAATAGTTTATCTTGGTATCTGCCCTTTTCAGTTTTGGTTGTGTCGATATAATGGTTCCATGGACTTAATTTGATGCTTGATGTCTGTTTGTTCATTTTAGTTTCCTGTTCTGTGGCTGGGGTTCTACTTAATGATTTTGGAAAaTAAACATGATATCATTATGTTGTTCATAAATTTGTCATGAATATTAGTAAGCACGCATCTTTTGCGCTTCATTTTGTAGTATGAAACTTTAGATGTTCTTTCCTGAAAACTAAGTTTATTTAGTAACTAGTAAGAAAATTCTATGAAGTGCTAGAGTAGGCTGTTACTGGTGTTCTTTTACATTTAATGCTTCTTAACTCTTTGGTTGCAGGAGTGGGAGAGGCCTAGGCCAGGACGTAGACCAGACATCTTTCCTCAATTTAGCCCCATGAAAACACCACTGCCACCACCATTGCCATGTGATCCCCCCcTTGAAGAAGACGAGGAGGAGGAGGAGAAGGAAGAGGAAGAAGAGGAAAATCCTGACAAGGAAAATCCAGATGAGCCTGGGGAGGAATAGATGCTGTCCTTGAAGAACTACTTGAGTTCCTTTCCCTTTTtCCATCTTCACTTTGTTTTTTGATAGGCTGAAAGCGTTAGATATCCCTAGGGGATGATGAGCTGAGTTAGTTTACAATGAACCAAATATGTTTGAGAGCTACAACTTATATTGCAATTCTATATTAAAGTAAATCTCTTAGGATTTCTTATTTTCTCGAGTTCCCCTGCTATAGGCAATGTATTTTACGAATAATTATCATGAATGATATGCCTTCTCTCCCGTTTGTACTCTCTTATATTTGAGTGTAGTTTCAGAGCAAATCTTTAGAAGCTGACGCAGGGTAGCACAAGGGGTTTCGCATTACTATATTGACACAAATCCCATAAACTGTTTGTTCT

mRNA sequence

GGGTGTGAGAATTCGATAATTTCATAAATTGAAAGGATAATTTGGCGGAGGAAACAGTGACGTTGTGGTGTGGAGAGGAAAATAAGAGGCGGTCCGGTGTCCAACAACTCTTGTGGCGGCTATTTGATTTTGGTGGAATCGGCCACCCGGAGATTCAGTAACACTCCAGCCGTCACCTCAGGAAACGGGAAGTTCATGGCGTCGATATCCTTTTTAACCTCTAAAACCCTAGTCTTACCATCGGTGACCTACCTACCACTATCTTCTTCTTCGTCTTCATCTACAACGCATAGTTGCTGTCTTGGTGGCTGCATATGCTCCTTCCCAATCAACCCGATTTCTACTTCTAATTTGATTTTTGGTAGAAGGAGAACGGGGAGGCAGGTGGTCCGAATGGCCCCGGATGAAGAGAAGCTCACTCGTCGCAATCCTCTCGATTTCCCAGTTGAGTGGGAGAGGCCTAGGCCAGGACGTAGACCAGACATCTTTCCTCAATTTAGCCCCATGAAAACACCACTGCCACCACCATTGCCATGTGATCCCCCCCTTgaagaagacgaggaggaggaggagaaggaagaggaagaagaggaAAATCCTGACAAGGAAAATCCAGATGAGCCTGGGGAGGAATAGATGCTGTCCTTGAAGAACTACTTGAGTTCCTTTCCCTTTTTCCATCTTCACTTTGTTTTTTGATAGGCTGAAAGCGTTAGATATCCCTAGGGGATGATGAGCTGAGTTAGTTTACAATGAACCAAATATGTTTGAGAGCTACAACTTATATTGCAATTCTATATTAAAGTAAATCTCTTAGGATTTCTTATTTTCTCGAGTTCCCCTGCTATAGGCAATGTATTTTACGAATAATTATCATGAATGATATGCCTTCTCTCCCGTTTGTACTCTCTTATATTTGAGTGTAGTTTCAGAGCAAATCTTTAGAAGCTGACGCAGGGTAGCACAAGGGGTTTCGCATTACTATATTGACACAAATCCCATAAACTGTTTGTTCT

Coding sequence (CDS)

ATGGCGTCGATATCCTTTTTAACCTCTAAAACCCTAGTCTTACCATCGGTGACCTACCTACCACTATCTTCTTCTTCGTCTTCATCTACAACGCATAGTTGCTGTCTTGGTGGCTGCATATGCTCCTTCCCAATCAACCCGATTTCTACTTCTAATTTGATTTTTGGTAGAAGGAGAACGGGGAGGCAGGTGGTCCGAATGGCCCCGGATGAAGAGAAGCTCACTCGTCGCAATCCTCTCGATTTCCCAGTTGAGTGGGAGAGGCCTAGGCCAGGACGTAGACCAGACATCTTTCCTCAATTTAGCCCCATGAAAACACCACTGCCACCACCATTGCCATGTGATCCCCCCcTTGAAGAAGACGAGGAGGAGGAGGAGAAGGAAGAGGAAGAAGAGGAAAATCCTGACAAGGAAAATCCAGATGAGCCTGGGGAGGAATAG

Protein sequence

MASISFLTSKTLVLPSVTYLPLSSSSSSSTTHSCCLGGCICSFPINPISTSNLIFGRRRTGRQVVRMAPDEEKLTRRNPLDFPVEWERPRPGRRPDIFPQFSPMKTPLPPPLPCDPPLEEDEEEEEKEEEEEENPDKENPDEPGEE*

Homology

[Close]

BLAST of Cucsa.235530 vs. TrEMBL
Match: A0A0A0LWI5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G366960 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 2.8e-80
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MASISFLTSKTLVLPSVTYLPLSSSSSSSTTHSCCLGGCICSFPINPISTSNLIFGRRRT 60
           MASISFLTSKTLVLPSVTYLPLSSSSSSSTTHSCCLGGCICSFPI PISTSNLIFGRRRT
Sbjct: 1   MASISFLTSKTLVLPSVTYLPLSSSSSSSTTHSCCLGGCICSFPIKPISTSNLIFGRRRT 60

Query: 61  GRQVVRMAPDEEKLTRRNPLDFPVEWERPRPGRRPDIFPQFSPMKTPLPPPLPCDPPLEE 120
           GRQVVRMAPDEEKLTRRNPLDFPVEWERPRPGRRPDIFPQFSPMKTPLPPPLPCDPPLEE
Sbjct: 61  GRQVVRMAPDEEKLTRRNPLDFPVEWERPRPGRRPDIFPQFSPMKTPLPPPLPCDPPLEE 120

Query: 121 DEEEEEKEEEEEENPDKENPDEPGEE 147
           DEEEEEKEEEEEENPDKENPDEPGEE
Sbjct: 121 DEEEEEKEEEEEENPDKENPDEPGEE 146

[Close]

BLAST of Cucsa.235530 vs. TrEMBL
Match: V4WD53_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009718mg PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.7e-40
Identity = 92/151 (60.93%), Postives = 110/151 (72.85%), Query Frame = 1


Query: 8   TSKTLVLPSVTYLPLSSSSSSSTTHSC-CLGGCICSFPINPISTSNLI--------FG-- 67
           TSKTL   +  +    +SSS+ST+HSC C    + +F  N +  +N I        FG  
Sbjct: 11  TSKTLAF-APPHAAKMTSSSASTSHSCSCSMESVPNFSSNRLIPNNRIAQTLVVPQFGFT 70

Query: 68  -----RRRTGRQVVRMAPDEEKLTRRNPLDFPVEWERPRPGRRPDIFPQFSPMKTPLPPP 127
                 +R  RQVVRMAP+EEKLTRR+PLDFP+EWE+P+P RRPDIFPQFSPMKTPLPPP
Sbjct: 71  RVIRYNQRAKRQVVRMAPEEEKLTRRSPLDFPIEWEKPKPARRPDIFPQFSPMKTPLPPP 130

Query: 128 LPCDPPLEEDEEEEEKEEEEEENPDKENPDE 143
           LPCDPP EEDEEEEEK+EEEEENPDKE+PD+
Sbjct: 131 LPCDPP-EEDEEEEEKKEEEEENPDKEDPDK 159

[Close]

BLAST of Cucsa.235530 vs. TrEMBL
Match: A0A067EAG5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030986mg PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 8.2e-40
Identity = 91/151 (60.26%), Postives = 110/151 (72.85%), Query Frame = 1


Query: 8   TSKTLVLPSVTYLPLSSSSSSSTTHSC-CLGGCICSFPINPISTSNLI--------FG-- 67
           TSKTL   +  +    +SSS+ST+HSC C    + +F  N +  +N +        FG  
Sbjct: 11  TSKTLAF-APPHAAKMTSSSASTSHSCSCSMESVPNFSSNRLIPNNRMAQTLVVPQFGFT 70

Query: 68  -----RRRTGRQVVRMAPDEEKLTRRNPLDFPVEWERPRPGRRPDIFPQFSPMKTPLPPP 127
                 +R  RQVVRMAP+EEKLTRR+PLDFP+EWE+P+P RRPDIFPQFSPMKTPLPPP
Sbjct: 71  RVIRYNQRAKRQVVRMAPEEEKLTRRSPLDFPIEWEKPKPARRPDIFPQFSPMKTPLPPP 130

Query: 128 LPCDPPLEEDEEEEEKEEEEEENPDKENPDE 143
           LPCDPP EEDEEEEEK+EEEEENPDKE+PD+
Sbjct: 131 LPCDPP-EEDEEEEEKKEEEEENPDKEDPDK 159

[Close]

BLAST of Cucsa.235530 vs. TrEMBL
Match: A0A078GCW3_BRANA (BnaA07g02500D protein OS=Brassica napus GN=BnaA07g02500D PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 3.1e-39
Identity = 88/148 (59.46%), Postives = 106/148 (71.62%), Query Frame = 1


Query: 1   MASISFLTSKTLVLPSVTYLPLSSSSSSSTTHSCCLGGCICSFPINPISTSNLIFGRRRT 60
           + S SFL S +LV+ S T +  SSSSS S     C       F   P S+ +L   RR  
Sbjct: 4   LPSASFLPSPSLVVLSPTKIFSSSSSSRSIV---CSSSRAHGFSSIPRSSPSLRMARRAN 63

Query: 61  GR--QVVRMAPDEEKLTRRNPLDFPVEWERPRPGRRPDIFPQFSPMKTPLPPPLPCDPPL 120
               QVV MAP+EEKLTRRNPLDFP+EWERP+PGRRPDIFP+FSPMKTPLPPP+P DPP 
Sbjct: 64  HNKLQVVAMAPEEEKLTRRNPLDFPIEWERPKPGRRPDIFPKFSPMKTPLPPPMPYDPPA 123

Query: 121 EEDEEEEEKEEEEEENPDKENPDEPGEE 147
           E+DEEEEEK+EEEEENPD+E  ++P ++
Sbjct: 124 EDDEEEEEKKEEEEENPDQEEEEQPDKQ 148

[Close]

BLAST of Cucsa.235530 vs. TrEMBL
Match: K9P2M9_9ROSI (Uncharacterized protein OS=Morella rubra PE=2 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 4.1e-39
Identity = 85/129 (65.89%), Postives = 100/129 (77.52%), Query Frame = 1


Query: 21  PLSSSSSSSTTHSCCLGGCICSFPINPISTSNLIFGR---RRTGRQVVRMAPDEEKLTRR 80
           P  SSSSS+T+H+C L    CS    P+  S  +      R    QVVRMAP+EEKLTRR
Sbjct: 35  PPPSSSSSATSHTCRLVRPRCSMVSFPMFDSPRMVSSSSGRAKKLQVVRMAPEEEKLTRR 94

Query: 81  NPLDFPVEWERPRPGRRPDIFPQFSPMKTPLPPPLPCDPPLEEDEEEEEKEEEEEENPDK 140
           NPLDFP+EWERP+PGRRPDIFPQFSPMKTPLPPPLP DPP EEDEEEEEK+EEEEE+P+K
Sbjct: 95  NPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPYDPP-EEDEEEEEKKEEEEEDPEK 154

Query: 141 ENPDEPGEE 147
           E P++P ++
Sbjct: 155 EEPEQPEKQ 162

[Close]

BLAST of Cucsa.235530 vs. TAIR10
Match: AT2G17240.1 (AT2G17240.1 unknown protein)

HSP 1 Score: 157.9 bits (398), Expect = 4.7e-39
Identity = 80/142 (56.34%), Postives = 100/142 (70.42%), Query Frame = 1


Query: 5   SFLTSKTLVLPSVTYLPLSSSSSSSTTHSCCLGGCICSFPINPISTSNLIFGRRRTGRQV 64
           S  +++ L  PS+  L   +  SS +    C    + +F     S+S     R R   QV
Sbjct: 3   SLCSARFLPSPSLDILSTKTKISSDSRSLGCSSSRVFAFSSVHRSSSR----RNRNQLQV 62

Query: 65  VRMAPDEEKLTRRNPLDFPVEWERPRPGRRPDIFPQFSPMKTPLPPPLPCDPPLEEDEEE 124
           V MAP+EEKLTRRNPLDFP+EWERP+PGRRPDIFP+FSPMKTPLPPP+P DPP EEDEEE
Sbjct: 63  VSMAPEEEKLTRRNPLDFPIEWERPKPGRRPDIFPKFSPMKTPLPPPMPYDPP-EEDEEE 122

Query: 125 EEKEEEEEENPDKENPDEPGEE 147
           EEK+EEEEENPD+E  ++P ++
Sbjct: 123 EEKKEEEEENPDQEEEEQPEKQ 139

[Close]

BLAST of Cucsa.235530 vs. TAIR10
Match: AT3G24506.1 (AT3G24506.1 unknown protein)

HSP 1 Score: 150.6 bits (379), Expect = 7.6e-37
Identity = 78/130 (60.00%), Postives = 94/130 (72.31%), Query Frame = 1


Query: 21  PLSSSS------SSSTTHSCCLGGCICSFPINPISTSNLIFGRR-RTGRQVVRMAPDEEK 80
           PLSSSS      S  +  S    G  CSF    I+       R+ R   QVV MAP+EEK
Sbjct: 20  PLSSSSLNRAAPSIFSPFSRINHGFSCSF----IAVQRFALSRKTRKQLQVVAMAPEEEK 79

Query: 81  LTRRNPLDFPVEWERPRPGRRPDIFPQFSPMKTPLPPPLPCDPPLEEDEEEEEKEEEEEE 140
           LTRRNPLDFP+EWERP+PGRRPDIFP+FSPMK+PLPPP+P DPP EE+EEEE+KEEE E+
Sbjct: 80  LTRRNPLDFPIEWERPKPGRRPDIFPKFSPMKSPLPPPMPYDPPEEEEEEEEKKEEETED 139

Query: 141 NPDKENPDEP 144
           +P+KE+ D+P
Sbjct: 140 DPEKEDEDQP 145

[Close]

BLAST of Cucsa.235530 vs. NCBI nr
Match: gi|449461977|ref|XP_004148718.1| (PREDICTED: actin-binding protein [Cucumis sativus])

HSP 1 Score: 305.8 bits (782), Expect = 4.0e-80
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MASISFLTSKTLVLPSVTYLPLSSSSSSSTTHSCCLGGCICSFPINPISTSNLIFGRRRT 60
           MASISFLTSKTLVLPSVTYLPLSSSSSSSTTHSCCLGGCICSFPI PISTSNLIFGRRRT
Sbjct: 1   MASISFLTSKTLVLPSVTYLPLSSSSSSSTTHSCCLGGCICSFPIKPISTSNLIFGRRRT 60

Query: 61  GRQVVRMAPDEEKLTRRNPLDFPVEWERPRPGRRPDIFPQFSPMKTPLPPPLPCDPPLEE 120
           GRQVVRMAPDEEKLTRRNPLDFPVEWERPRPGRRPDIFPQFSPMKTPLPPPLPCDPPLEE
Sbjct: 61  GRQVVRMAPDEEKLTRRNPLDFPVEWERPRPGRRPDIFPQFSPMKTPLPPPLPCDPPLEE 120

Query: 121 DEEEEEKEEEEEENPDKENPDEPGEE 147
           DEEEEEKEEEEEENPDKENPDEPGEE
Sbjct: 121 DEEEEEKEEEEEENPDKENPDEPGEE 146

[Close]

BLAST of Cucsa.235530 vs. NCBI nr
Match: gi|659126822|ref|XP_008463385.1| (PREDICTED: uncharacterized protein LOC103501552 [Cucumis melo])

HSP 1 Score: 256.1 bits (653), Expect = 3.6e-65
Identity = 123/146 (84.25%), Postives = 133/146 (91.10%), Query Frame = 1


Query: 1   MASISFLTSKTLVLPSVTYLPLSSSSSSSTTHSCCLGGCICSFPINPISTSNLIFGRRRT 60
           MASIS  +SKTLV PS TYL +S  SSSST+HSCCLGGC CSFPI P+STSNLIFGRRRT
Sbjct: 67  MASISLFSSKTLVSPSATYLRIS--SSSSTSHSCCLGGCRCSFPIKPLSTSNLIFGRRRT 126

Query: 61  GRQVVRMAPDEEKLTRRNPLDFPVEWERPRPGRRPDIFPQFSPMKTPLPPPLPCDPPLEE 120
           GRQVVRMAP+EEKLTRRNPLDFP+EWERPRPGRRPDIFPQFSPMKTPLP PLPCDPP EE
Sbjct: 127 GRQVVRMAPEEEKLTRRNPLDFPIEWERPRPGRRPDIFPQFSPMKTPLPLPLPCDPP-EE 186

Query: 121 DEEEEEKEEEEEENPDKENPDEPGEE 147
           DEEEEEK+EEEEENPDKENP+ P ++
Sbjct: 187 DEEEEEKKEEEEENPDKENPEGPEQQ 209

[Close]

BLAST of Cucsa.235530 vs. NCBI nr
Match: gi|645244661|ref|XP_008228525.1| (PREDICTED: coiled-coil domain-containing protein 9-like [Prunus mume])

HSP 1 Score: 176.4 bits (446), Expect = 3.6e-41
Identity = 92/153 (60.13%), Postives = 110/153 (71.90%), Query Frame = 1


Query: 7   LTSKTLVLPSVTYLP-LSSSSSSSTTHSCCLGGCICSF-----PINP-----ISTSNLIF 66
           L S TL LP    +P L  SSSSS++ S     C+CSF       NP     +    + F
Sbjct: 3   LRSLTLPLPFPAVIPPLPPSSSSSSSSSSSSSSCLCSFRPYQYKPNPGCSIALRAKPISF 62

Query: 67  GRRRTGRQVVRMAPDEEKLTRRNPLDFPVEWERPRPGRRPDIFPQFSPMKTPLPPPLPCD 126
             RR    VVRMAP+EEKLTRR+PLDFP+EWERP+PGRRPDIFPQFSPMKTPLPPPLP D
Sbjct: 63  LNRRRQSHVVRMAPEEEKLTRRSPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPAD 122

Query: 127 PPLEEDEEEEEKEEEE--EENPDKENPDEPGEE 147
           PP E++EEEE+KEEEE  EE+PDKENP++PG++
Sbjct: 123 PPEEDEEEEEKKEEEEEGEEDPDKENPEDPGQQ 155

[Close]

BLAST of Cucsa.235530 vs. NCBI nr
Match: gi|567918296|ref|XP_006451154.1| (hypothetical protein CICLE_v10009718mg [Citrus clementina])

HSP 1 Score: 172.6 bits (436), Expect = 5.3e-40
Identity = 92/151 (60.93%), Postives = 110/151 (72.85%), Query Frame = 1


Query: 8   TSKTLVLPSVTYLPLSSSSSSSTTHSC-CLGGCICSFPINPISTSNLI--------FG-- 67
           TSKTL   +  +    +SSS+ST+HSC C    + +F  N +  +N I        FG  
Sbjct: 11  TSKTLAF-APPHAAKMTSSSASTSHSCSCSMESVPNFSSNRLIPNNRIAQTLVVPQFGFT 70

Query: 68  -----RRRTGRQVVRMAPDEEKLTRRNPLDFPVEWERPRPGRRPDIFPQFSPMKTPLPPP 127
                 +R  RQVVRMAP+EEKLTRR+PLDFP+EWE+P+P RRPDIFPQFSPMKTPLPPP
Sbjct: 71  RVIRYNQRAKRQVVRMAPEEEKLTRRSPLDFPIEWEKPKPARRPDIFPQFSPMKTPLPPP 130

Query: 128 LPCDPPLEEDEEEEEKEEEEEENPDKENPDE 143
           LPCDPP EEDEEEEEK+EEEEENPDKE+PD+
Sbjct: 131 LPCDPP-EEDEEEEEKKEEEEENPDKEDPDK 159

[Close]

BLAST of Cucsa.235530 vs. NCBI nr
Match: gi|641831847|gb|KDO50895.1| (hypothetical protein CISIN_1g030986mg [Citrus sinensis])

HSP 1 Score: 171.4 bits (433), Expect = 1.2e-39
Identity = 91/151 (60.26%), Postives = 110/151 (72.85%), Query Frame = 1


Query: 8   TSKTLVLPSVTYLPLSSSSSSSTTHSC-CLGGCICSFPINPISTSNLI--------FG-- 67
           TSKTL   +  +    +SSS+ST+HSC C    + +F  N +  +N +        FG  
Sbjct: 11  TSKTLAF-APPHAAKMTSSSASTSHSCSCSMESVPNFSSNRLIPNNRMAQTLVVPQFGFT 70

Query: 68  -----RRRTGRQVVRMAPDEEKLTRRNPLDFPVEWERPRPGRRPDIFPQFSPMKTPLPPP 127
                 +R  RQVVRMAP+EEKLTRR+PLDFP+EWE+P+P RRPDIFPQFSPMKTPLPPP
Sbjct: 71  RVIRYNQRAKRQVVRMAPEEEKLTRRSPLDFPIEWEKPKPARRPDIFPQFSPMKTPLPPP 130

Query: 128 LPCDPPLEEDEEEEEKEEEEEENPDKENPDE 143
           LPCDPP EEDEEEEEK+EEEEENPDKE+PD+
Sbjct: 131 LPCDPP-EEDEEEEEKKEEEEENPDKEDPDK 159

The following BLAST results are available for this feature:

BLAST of Cucsa.235530 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWI5_CUCSA	2.8e-80	99.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G366960 PE=4 SV=1	[more]
V4WD53_9ROSI	3.7e-40	60.93	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009718mg PE=4 SV=1	[more]
A0A067EAG5_CITSI	8.2e-40	60.26	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030986mg PE=4 SV=1	[more]
A0A078GCW3_BRANA	3.1e-39	59.46	BnaA07g02500D protein OS=Brassica napus GN=BnaA07g02500D PE=4 SV=1	[more]
K9P2M9_9ROSI	4.1e-39	65.89	Uncharacterized protein OS=Morella rubra PE=2 SV=1	[more]

BLAST of Cucsa.235530 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G17240.1	4.7e-39	56.34	unknown protein	[more]
AT3G24506.1	7.6e-37	60.00	unknown protein	[more]

BLAST of Cucsa.235530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449461977\|ref\|XP_004148718.1\|	4.0e-80	99.32	PREDICTED: actin-binding protein [Cucumis sativus]	[more]
gi\|659126822\|ref\|XP_008463385.1\|	3.6e-65	84.25	PREDICTED: uncharacterized protein LOC103501552 [Cucumis melo]	[more]
gi\|645244661\|ref\|XP_008228525.1\|	3.6e-41	60.13	PREDICTED: coiled-coil domain-containing protein 9-like [Prunus mume]	[more]
gi\|567918296\|ref\|XP_006451154.1\|	5.3e-40	60.93	hypothetical protein CICLE_v10009718mg [Citrus clementina]	[more]
gi\|641831847\|gb\|KDO50895.1\|	1.2e-39	60.26	hypothetical protein CISIN_1g030986mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.235530.1	Cucsa.235530.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35713	FAMILY NOT NAMED	coord: 53..145 score: 6.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.235530	Cla010630	Watermelon (97103) v1	cgywmB439
Cucsa.235530	Csa1G366960	Cucumber (Chinese Long) v2	cgycuB333
Cucsa.235530	MELO3C025336	Melon (DHL92) v3.5.1	cgymeB396
Cucsa.235530	CSPI01G19210	Wild cucumber (PI 183967)	cgycpiB348
Cucsa.235530	CmaCh10G006100	Cucurbita maxima (Rimu)	cgycmaB0648
Cucsa.235530	CmaCh11G006040	Cucurbita maxima (Rimu)	cgycmaB0649
Cucsa.235530	CmoCh10G006500	Cucurbita moschata (Rifu)	cgycmoB0649
Cucsa.235530	CmoCh11G006090	Cucurbita moschata (Rifu)	cgycmoB0650
Cucsa.235530	Lsi06G008810	Bottle gourd (USVL1VR-Ls)	cgylsiB382
Cucsa.235530	Cp4.1LG18g04370	Cucurbita pepo (Zucchini)	cgycpeB0618
Cucsa.235530	Cp4.1LG04g09980	Cucurbita pepo (Zucchini)	cgycpeB0619
Cucsa.235530	MELO3C025336.2	Melon (DHL92) v3.6.1	cgymedB394
Cucsa.235530	CsaV3_1G030480	Cucumber (Chinese Long) v3	cgycucB353
Cucsa.235530	Cla97C06G118250	Watermelon (97103) v2	cgywmbB413
Cucsa.235530	Bhi02G000936	Wax gourd	cgywgoB465
Cucsa.235530	Carg12191	Silver-seed gourd	carcgyB0042
Cucsa.235530	Carg09859	Silver-seed gourd	carcgyB0157

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.235530	Wild cucumber (PI 183967)	cgycpiB349