CSPI01G19210 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G19210
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	tRNA 2-thiocytidine biosynthesis TtcA
Location	Chr1 : 14656412 .. 14659300 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAGGTGGAGAGAAAGGATGCAATTTTTATTTTAGCGGAATTACATTAAGAAGTGGGTGTGAGAATTCGATAATTTCATAAATTGAAAGGATAATTTGGCGGAGGAAACAGTGACGTTGTGGTGTGGAGAGGAAAATAAGAGGCGGTCCGGTGTCCAACAACTCTTGTGGCGGCTATTTGATTTTGGTGGAATCGGCCACCAGGAGATTCAGTAACACTCCAGCCGTCACCTCAGGAAACGGGAAGTTCATGGCGTCGATATCCTTTTTAACCTCTAAAACCCTAGTCTTACCATCGGTGACCTACCTACCACTATCTTCTTCTTCGTCTTCATCTACAACGCATAGTTGCTGTCTTGGTGGCTGCATATGCTCCTTCCCAATCAAGCCGATTTCTACTTCTAATTTGATTTTTGGTAGAAGGAGAACGGGGAGGCAGGTGGTCCGAATGGCCCCGGATGAAGAGAAGCTCACTCGTCGCAATCCTCTCGATTTCCCAGTTGTATCTTTCTCACTCCTTTCCTCCTTTTTTTTTTCCTGCAGCATTTTATGTTTTTTGTCTTGCAATGGAGTTCTTTTTTATGAGATTTGGTGCTTTTGCTTCCCGTTTTTAATTACTTTTGCTACTGTACCCCTAGATTGCTTGGGGGTGGATAATTGAAGCATTTCTAGGAATTGTTATAGTTAGTGATAAATTTTTATCTATGAAGGTTTTAGAAGGCTTATTCGGGAGTTATCTTGCCACGTTTTTCCTGCAAATTATATCTGCCTGCTTGTTTCGGCTATGTCTGGATTTTAGTTGTTAAACTTAGATTGGTAGAAGTTATTGGCAGTCCTCAAGGCATTTTATTGAAGATCCCACGTTGGGAAAAAAAACAAGGGACCTCAAATCTCATTAAGTAGATGGGTTACTCAAATCTTTGTTATCTAATACGATATTTGTCCATGAAGTTCAAACGGGCATTTGGTCCAAAATAAAAAATTGGGATCTGACCCAAGAATGGCGAACCCAAGGAAACACTATCTTGAGGGGCATATTGAGGATCTTACATAGAAAAAATCTGAGAGACTTCACAACTTCAATAAGACAAATGACTTATCTTATTGTCAATTGGTTTTGAGGTAAAACTTTATGTTATCTAATGCGTTTGTGTGGCAGTTCATAGGGCTGGTGCAGTCTCTTTGAGGCATTTGATGCAACTTTGTCAGTTTGCAAGGTGGTCGGGAATCAATTGAGAGAAGTTGCTCTGTCATCCTCCTTTTCAAGAGAAAGAACCATTGTATGTGACAAGCTGCAGATGTGCCATTTGGTGGCATCTTTGGTCCAGAGAAATAGTAGAAGTTTCAGGGAGAGGAGAATTTTCACAGGGACGTTTGAGACCTTGTTAGATTCTATGACCTTGGTGTCCATATCTTTTTCTAATTACCCATTGAGTTACACTTTACTTGATTGGAGCCCCCTCATTTTTGTACGCTCCTCCTTTTTTGATGCTAGTACATTTTTTCACTTTTTTTTCTCAAATAAAAGGATACGCCAGATGTCATGAATGTTTGTGTTAGGACTCTTCCCCCTGCACACAGAAAATCCCAATAACAATATAGAAACAGAGATGGTACTTTGGATATTTATATATCACTATCAACCAGAAAGTGATCGCAATGATAATCCAGAACAAAAGAAAACAATAACAACAAGATAAGAAAATGATAGTAAAGGACTCCTGGCAATTTGAGAAGCTGGCTCTCTCCCTAAAAGCTCTCAGCAGCTTTTCCCAAAAATATAACCTACCTCATCAATCCCTAAAAACATTCCTTAAGTACCTCCATTCCCTTGGTAGGACCTCTCCAAGATATTCCTTTCATTTATTTATATGGGCCGAGCTGTCTTCTTGAACATTCTCTTTTTTACCCTTCCGTTTGTAGGTATGTATGATAGGAGGTCTTACAGTTTGTTGGATAATTTAATAGTTTATCTTGGTATCTGCCCTTTTCAGTTTTGGTTGTGTCGATATAATGGTTCCATGGACTTAATTTGATGCTTGATGTCTGTTTGTTCATTTTAGTTTCCTGTTCTGTGGCTGGGGTTCTACTTAATGATTTTGGAAAATAAACATGATATCATTATGTTGTTCATAAATTTGTCATGAATATTAGTAAGCACGCATCTTTTGCGCTTCATTTTGTAGTATGAAACTTTAGATGTTCTTTCCTGAAAACTAAGTTTATTTAGTAACTAGTAAGAAAATTCTATGGAGTGCTAGAGTAGGCTGTTACTGGTGTTCTTTTACATTTAATGCTTCTTAACTCTTTGGTTGCAGGAGTGGGAGAGGCCTAGGCCAGGACGTAGACCAGACATCTTTCCTCAATTTAGCCCCATGAAAACACCACTGCCACCACCATTGCCATGTGATCCCCCCCTTGAAGAAGACGAGGAGGAGGAGGAGAAGGAAGAGGAAGAAGAGGAAAATCCTGACAAGGAAAATCCAGATGAGCCTGGGGAGGAATAGATGCTGTCCTTGAAGAACTACTTGAGTTCCTTTCCCTTTTTCCATCTTCACTTTGTTTTTTGATAGGCTGAAAGCGTTAGATATCCCTAGGGGATGATGAGCTGAGTTAGTTTACAATGAACCGAATATGTTTGAGAGCTACAACTTATATTGCAATTCTATATTAAAGTAAATCTCTTAGGATTTCTTATTTTCTCGAGTTCCCCTGCTATAGGCAATGTATTTTACGAATAATTATCATGAATGATATGCCTTCTCTCCCGTTTGTACTCTCTTATATTTGAGTGTAGTTTCAGAGCAAATCTTTAGAAGCTGACGCAGGGTAGCACAAGGGGTTTCGCATTACTATATTGACACAAATCCCATAAACTGTTTGTTCT

mRNA sequence

ATGGCGTCGATATCCTTTTTAACCTCTAAAACCCTAGTCTTACCATCGGTGACCTACCTACCACTATCTTCTTCTTCGTCTTCATCTACAACGCATAGTTGCTGTCTTGGTGGCTGCATATGCTCCTTCCCAATCAAGCCGATTTCTACTTCTAATTTGATTTTTGGTAGAAGGAGAACGGGGAGGCAGGTGGTCCGAATGGCCCCGGATGAAGAGAAGCTCACTCGTCGCAATCCTCTCGATTTCCCAGTTGAGTGGGAGAGGCCTAGGCCAGGACGTAGACCAGACATCTTTCCTCAATTTAGCCCCATGAAAACACCACTGCCACCACCATTGCCATGTGATCCCCCCCTTGAAGAAGACGAGGAGGAGGAGGAGAAGGAAGAGGAAGAAGAGGAAAATCCTGACAAGGAAAATCCAGATGAGCCTGGGGAGGAATAG

Coding sequence (CDS)

ATGGCGTCGATATCCTTTTTAACCTCTAAAACCCTAGTCTTACCATCGGTGACCTACCTACCACTATCTTCTTCTTCGTCTTCATCTACAACGCATAGTTGCTGTCTTGGTGGCTGCATATGCTCCTTCCCAATCAAGCCGATTTCTACTTCTAATTTGATTTTTGGTAGAAGGAGAACGGGGAGGCAGGTGGTCCGAATGGCCCCGGATGAAGAGAAGCTCACTCGTCGCAATCCTCTCGATTTCCCAGTTGAGTGGGAGAGGCCTAGGCCAGGACGTAGACCAGACATCTTTCCTCAATTTAGCCCCATGAAAACACCACTGCCACCACCATTGCCATGTGATCCCCCCCTTGAAGAAGACGAGGAGGAGGAGGAGAAGGAAGAGGAAGAAGAGGAAAATCCTGACAAGGAAAATCCAGATGAGCCTGGGGAGGAATAG

Homology

[Close]

BLAST of CSPI01G19210 vs. TrEMBL
Match: A0A0A0LWI5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G366960 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 6.9e-71
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1


Query: 1   MASISFLTSKTLVLPSVTYLPLSSSSSSSTTHSCCLGGCICSFPIKPISTSNLIFGRRRT 60
           MASISFLTSKTLVLPSVTYLPLSSSSSSSTTHSCCLGGCICSFPIKPISTSNLIFGRRRT
Sbjct: 1   MASISFLTSKTLVLPSVTYLPLSSSSSSSTTHSCCLGGCICSFPIKPISTSNLIFGRRRT 60

Query: 61  GRQVVRMAPDEEKLTRRNPLDFPVEWERPRPGRRPDIFPQFSPMKTPLPPPLPCDPPLEE 120
           GRQVVRMAPDEEKLTRRNPLDFPVEWERPRPGRRPDIFPQFSPMKTPLPPPLPCDPPLEE
Sbjct: 61  GRQVVRMAPDEEKLTRRNPLDFPVEWERPRPGRRPDIFPQFSPMKTPLPPPLPCDPPLEE 120

Query: 121 DEEEEEKEEEEEENPDKENPDEPGEE 147
           DEEEEEKEEEEEENPDKENPDEPGEE
Sbjct: 121 DEEEEEKEEEEEENPDKENPDEPGEE 146

[Close]

BLAST of CSPI01G19210 vs. TrEMBL
Match: A0A067EAG5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030986mg PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.0e-30
Identity = 92/156 (58.97%), Postives = 108/156 (69.23%), Query Frame = 1


Query: 8   TSKTLVLPSVTYLPLSSSSSSSTTHSCCLGGCICSFPIKPISTSNLI------------- 67
           TSKTL   +  +    +SSS+ST+HSC      CS    P  +SN +             
Sbjct: 11  TSKTLAF-APPHAAKMTSSSASTSHSCS-----CSMESVPNFSSNRLIPNNRMAQTLVVP 70

Query: 68  -FG-------RRRTGRQVVRMAPDEEKLTRRNPLDFPVEWERPRPGRRPDIFPQFSPMKT 127
            FG        +R  RQVVRMAP+EEKLTRR+PLDFP+EWE+P+P RRPDIFPQFSPMKT
Sbjct: 71  QFGFTRVIRYNQRAKRQVVRMAPEEEKLTRRSPLDFPIEWEKPKPARRPDIFPQFSPMKT 130

Query: 128 PLPPPLPCDPPLEEDEEEEEKEEEEEENPDKENPDE 143
           PLPPPLPCDPP EEDEEEEEK+EEEEENPDKE+PD+
Sbjct: 131 PLPPPLPCDPP-EEDEEEEEKKEEEEENPDKEDPDK 159

[Close]

BLAST of CSPI01G19210 vs. TrEMBL
Match: V4WD53_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009718mg PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.0e-30
Identity = 91/151 (60.26%), Postives = 109/151 (72.19%), Query Frame = 1


Query: 8   TSKTLVLPSVTYLPLSSSSSSSTTHSC-CLGGCICSFPIKPISTSNLI--------FG-- 67
           TSKTL   +  +    +SSS+ST+HSC C    + +F    +  +N I        FG  
Sbjct: 11  TSKTLAF-APPHAAKMTSSSASTSHSCSCSMESVPNFSSNRLIPNNRIAQTLVVPQFGFT 70

Query: 68  -----RRRTGRQVVRMAPDEEKLTRRNPLDFPVEWERPRPGRRPDIFPQFSPMKTPLPPP 127
                 +R  RQVVRMAP+EEKLTRR+PLDFP+EWE+P+P RRPDIFPQFSPMKTPLPPP
Sbjct: 71  RVIRYNQRAKRQVVRMAPEEEKLTRRSPLDFPIEWEKPKPARRPDIFPQFSPMKTPLPPP 130

Query: 128 LPCDPPLEEDEEEEEKEEEEEENPDKENPDE 143
           LPCDPP EEDEEEEEK+EEEEENPDKE+PD+
Sbjct: 131 LPCDPP-EEDEEEEEKKEEEEENPDKEDPDK 159

[Close]

BLAST of CSPI01G19210 vs. TrEMBL
Match: K9P2M9_9ROSI (Uncharacterized protein OS=Morella rubra PE=2 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 5.9e-30
Identity = 85/129 (65.89%), Postives = 100/129 (77.52%), Query Frame = 1


Query: 21  PLSSSSSSSTTHSCCLGGCICSFPIKPISTSNLIFGR---RRTGRQVVRMAPDEEKLTRR 80
           P  SSSSS+T+H+C L    CS    P+  S  +      R    QVVRMAP+EEKLTRR
Sbjct: 35  PPPSSSSSATSHTCRLVRPRCSMVSFPMFDSPRMVSSSSGRAKKLQVVRMAPEEEKLTRR 94

Query: 81  NPLDFPVEWERPRPGRRPDIFPQFSPMKTPLPPPLPCDPPLEEDEEEEEKEEEEEENPDK 140
           NPLDFP+EWERP+PGRRPDIFPQFSPMKTPLPPPLP DPP EEDEEEEEK+EEEEE+P+K
Sbjct: 95  NPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPYDPP-EEDEEEEEKKEEEEEDPEK 154

Query: 141 ENPDEPGEE 147
           E P++P ++
Sbjct: 155 EEPEQPEKQ 162

[Close]

BLAST of CSPI01G19210 vs. TrEMBL
Match: A0A078GCW3_BRANA (BnaA07g02500D protein OS=Brassica napus GN=BnaA07g02500D PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.2e-29
Identity = 88/148 (59.46%), Postives = 106/148 (71.62%), Query Frame = 1


Query: 1   MASISFLTSKTLVLPSVTYLPLSSSSSSSTTHSCCLGGCICSFPIKPISTSNLIFGRRRT 60
           + S SFL S +LV+ S T +  SSSSS S     C       F   P S+ +L   RR  
Sbjct: 4   LPSASFLPSPSLVVLSPTKIFSSSSSSRSIV---CSSSRAHGFSSIPRSSPSLRMARRAN 63

Query: 61  GR--QVVRMAPDEEKLTRRNPLDFPVEWERPRPGRRPDIFPQFSPMKTPLPPPLPCDPPL 120
               QVV MAP+EEKLTRRNPLDFP+EWERP+PGRRPDIFP+FSPMKTPLPPP+P DPP 
Sbjct: 64  HNKLQVVAMAPEEEKLTRRNPLDFPIEWERPKPGRRPDIFPKFSPMKTPLPPPMPYDPPA 123

Query: 121 EEDEEEEEKEEEEEENPDKENPDEPGEE 147
           E+DEEEEEK+EEEEENPD+E  ++P ++
Sbjct: 124 EDDEEEEEKKEEEEENPDQEEEEQPDKQ 148

[Close]

BLAST of CSPI01G19210 vs. TAIR10
Match: AT2G17240.1 (AT2G17240.1 unknown protein)

HSP 1 Score: 124.8 bits (312), Expect = 4.4e-29
Identity = 80/142 (56.34%), Postives = 100/142 (70.42%), Query Frame = 1


Query: 5   SFLTSKTLVLPSVTYLPLSSSSSSSTTHSCCLGGCICSFPIKPISTSNLIFGRRRTGRQV 64
           S  +++ L  PS+  L   +  SS +    C    + +F     S+S     R R   QV
Sbjct: 3   SLCSARFLPSPSLDILSTKTKISSDSRSLGCSSSRVFAFSSVHRSSSR----RNRNQLQV 62

Query: 65  VRMAPDEEKLTRRNPLDFPVEWERPRPGRRPDIFPQFSPMKTPLPPPLPCDPPLEEDEEE 124
           V MAP+EEKLTRRNPLDFP+EWERP+PGRRPDIFP+FSPMKTPLPPP+P DPP EEDEEE
Sbjct: 63  VSMAPEEEKLTRRNPLDFPIEWERPKPGRRPDIFPKFSPMKTPLPPPMPYDPP-EEDEEE 122

Query: 125 EEKEEEEEENPDKENPDEPGEE 147
           EEK+EEEEENPD+E  ++P ++
Sbjct: 123 EEKKEEEEENPDQEEEEQPEKQ 139

[Close]

BLAST of CSPI01G19210 vs. TAIR10
Match: AT3G24506.1 (AT3G24506.1 unknown protein)

HSP 1 Score: 122.5 bits (306), Expect = 2.2e-28
Identity = 78/130 (60.00%), Postives = 94/130 (72.31%), Query Frame = 1


Query: 21  PLSSSS------SSSTTHSCCLGGCICSFPIKPISTSNLIFGRR-RTGRQVVRMAPDEEK 80
           PLSSSS      S  +  S    G  CSF    I+       R+ R   QVV MAP+EEK
Sbjct: 20  PLSSSSLNRAAPSIFSPFSRINHGFSCSF----IAVQRFALSRKTRKQLQVVAMAPEEEK 79

Query: 81  LTRRNPLDFPVEWERPRPGRRPDIFPQFSPMKTPLPPPLPCDPPLEEDEEEEEKEEEEEE 140
           LTRRNPLDFP+EWERP+PGRRPDIFP+FSPMK+PLPPP+P DPP EE+EEEE+KEEE E+
Sbjct: 80  LTRRNPLDFPIEWERPKPGRRPDIFPKFSPMKSPLPPPMPYDPPEEEEEEEEKKEEETED 139

Query: 141 NPDKENPDEP 144
           +P+KE+ D+P
Sbjct: 140 DPEKEDEDQP 145

[Close]

BLAST of CSPI01G19210 vs. NCBI nr
Match: gi|449461977|ref|XP_004148718.1| (PREDICTED: actin-binding protein [Cucumis sativus])

HSP 1 Score: 274.6 bits (701), Expect = 9.8e-71
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1


Query: 1   MASISFLTSKTLVLPSVTYLPLSSSSSSSTTHSCCLGGCICSFPIKPISTSNLIFGRRRT 60
           MASISFLTSKTLVLPSVTYLPLSSSSSSSTTHSCCLGGCICSFPIKPISTSNLIFGRRRT
Sbjct: 1   MASISFLTSKTLVLPSVTYLPLSSSSSSSTTHSCCLGGCICSFPIKPISTSNLIFGRRRT 60

Query: 61  GRQVVRMAPDEEKLTRRNPLDFPVEWERPRPGRRPDIFPQFSPMKTPLPPPLPCDPPLEE 120
           GRQVVRMAPDEEKLTRRNPLDFPVEWERPRPGRRPDIFPQFSPMKTPLPPPLPCDPPLEE
Sbjct: 61  GRQVVRMAPDEEKLTRRNPLDFPVEWERPRPGRRPDIFPQFSPMKTPLPPPLPCDPPLEE 120

Query: 121 DEEEEEKEEEEEENPDKENPDEPGEE 147
           DEEEEEKEEEEEENPDKENPDEPGEE
Sbjct: 121 DEEEEEKEEEEEENPDKENPDEPGEE 146

[Close]

BLAST of CSPI01G19210 vs. NCBI nr
Match: gi|659126822|ref|XP_008463385.1| (PREDICTED: uncharacterized protein LOC103501552 [Cucumis melo])

HSP 1 Score: 224.9 bits (572), Expect = 8.9e-56
Identity = 124/146 (84.93%), Postives = 134/146 (91.78%), Query Frame = 1


Query: 1   MASISFLTSKTLVLPSVTYLPLSSSSSSSTTHSCCLGGCICSFPIKPISTSNLIFGRRRT 60
           MASIS  +SKTLV PS TYL +S  SSSST+HSCCLGGC CSFPIKP+STSNLIFGRRRT
Sbjct: 67  MASISLFSSKTLVSPSATYLRIS--SSSSTSHSCCLGGCRCSFPIKPLSTSNLIFGRRRT 126

Query: 61  GRQVVRMAPDEEKLTRRNPLDFPVEWERPRPGRRPDIFPQFSPMKTPLPPPLPCDPPLEE 120
           GRQVVRMAP+EEKLTRRNPLDFP+EWERPRPGRRPDIFPQFSPMKTPLP PLPCDPP EE
Sbjct: 127 GRQVVRMAPEEEKLTRRNPLDFPIEWERPRPGRRPDIFPQFSPMKTPLPLPLPCDPP-EE 186

Query: 121 DEEEEEKEEEEEENPDKENPDEPGEE 147
           DEEEEEK+EEEEENPDKENP+ P ++
Sbjct: 187 DEEEEEKKEEEEENPDKENPEGPEQQ 209

[Close]

BLAST of CSPI01G19210 vs. NCBI nr
Match: gi|645244661|ref|XP_008228525.1| (PREDICTED: coiled-coil domain-containing protein 9-like [Prunus mume])

HSP 1 Score: 144.4 bits (363), Expect = 1.5e-31
Identity = 92/153 (60.13%), Postives = 110/153 (71.90%), Query Frame = 1


Query: 7   LTSKTLVLPSVTYLP-LSSSSSSSTTHSCCLGGCICSF---PIKP-------ISTSNLIF 66
           L S TL LP    +P L  SSSSS++ S     C+CSF     KP       +    + F
Sbjct: 3   LRSLTLPLPFPAVIPPLPPSSSSSSSSSSSSSSCLCSFRPYQYKPNPGCSIALRAKPISF 62

Query: 67  GRRRTGRQVVRMAPDEEKLTRRNPLDFPVEWERPRPGRRPDIFPQFSPMKTPLPPPLPCD 126
             RR    VVRMAP+EEKLTRR+PLDFP+EWERP+PGRRPDIFPQFSPMKTPLPPPLP D
Sbjct: 63  LNRRRQSHVVRMAPEEEKLTRRSPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPAD 122

Query: 127 PPLEEDEEEEEKEEEE--EENPDKENPDEPGEE 147
           PP E++EEEE+KEEEE  EE+PDKENP++PG++
Sbjct: 123 PPEEDEEEEEKKEEEEEGEEDPDKENPEDPGQQ 155

[Close]

BLAST of CSPI01G19210 vs. NCBI nr
Match: gi|567918296|ref|XP_006451154.1| (hypothetical protein CICLE_v10009718mg [Citrus clementina])

HSP 1 Score: 140.2 bits (352), Expect = 2.9e-30
Identity = 91/151 (60.26%), Postives = 109/151 (72.19%), Query Frame = 1


Query: 8   TSKTLVLPSVTYLPLSSSSSSSTTHSC-CLGGCICSFPIKPISTSNLI--------FG-- 67
           TSKTL   +  +    +SSS+ST+HSC C    + +F    +  +N I        FG  
Sbjct: 11  TSKTLAF-APPHAAKMTSSSASTSHSCSCSMESVPNFSSNRLIPNNRIAQTLVVPQFGFT 70

Query: 68  -----RRRTGRQVVRMAPDEEKLTRRNPLDFPVEWERPRPGRRPDIFPQFSPMKTPLPPP 127
                 +R  RQVVRMAP+EEKLTRR+PLDFP+EWE+P+P RRPDIFPQFSPMKTPLPPP
Sbjct: 71  RVIRYNQRAKRQVVRMAPEEEKLTRRSPLDFPIEWEKPKPARRPDIFPQFSPMKTPLPPP 130

Query: 128 LPCDPPLEEDEEEEEKEEEEEENPDKENPDE 143
           LPCDPP EEDEEEEEK+EEEEENPDKE+PD+
Sbjct: 131 LPCDPP-EEDEEEEEKKEEEEENPDKEDPDK 159

[Close]

BLAST of CSPI01G19210 vs. NCBI nr
Match: gi|641831847|gb|KDO50895.1| (hypothetical protein CISIN_1g030986mg [Citrus sinensis])

HSP 1 Score: 140.2 bits (352), Expect = 2.9e-30
Identity = 92/156 (58.97%), Postives = 108/156 (69.23%), Query Frame = 1


Query: 8   TSKTLVLPSVTYLPLSSSSSSSTTHSCCLGGCICSFPIKPISTSNLI------------- 67
           TSKTL   +  +    +SSS+ST+HSC      CS    P  +SN +             
Sbjct: 11  TSKTLAF-APPHAAKMTSSSASTSHSCS-----CSMESVPNFSSNRLIPNNRMAQTLVVP 70

Query: 68  -FG-------RRRTGRQVVRMAPDEEKLTRRNPLDFPVEWERPRPGRRPDIFPQFSPMKT 127
            FG        +R  RQVVRMAP+EEKLTRR+PLDFP+EWE+P+P RRPDIFPQFSPMKT
Sbjct: 71  QFGFTRVIRYNQRAKRQVVRMAPEEEKLTRRSPLDFPIEWEKPKPARRPDIFPQFSPMKT 130

Query: 128 PLPPPLPCDPPLEEDEEEEEKEEEEEENPDKENPDE 143
           PLPPPLPCDPP EEDEEEEEK+EEEEENPDKE+PD+
Sbjct: 131 PLPPPLPCDPP-EEDEEEEEKKEEEEENPDKEDPDK 159

The following BLAST results are available for this feature:

BLAST of CSPI01G19210 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G19210 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWI5_CUCSA	6.9e-71	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G366960 PE=4 SV=1	[more]
A0A067EAG5_CITSI	2.0e-30	58.97	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030986mg PE=4 SV=1	[more]
V4WD53_9ROSI	2.0e-30	60.26	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009718mg PE=4 SV=1	[more]
K9P2M9_9ROSI	5.9e-30	65.89	Uncharacterized protein OS=Morella rubra PE=2 SV=1	[more]
A0A078GCW3_BRANA	2.2e-29	59.46	BnaA07g02500D protein OS=Brassica napus GN=BnaA07g02500D PE=4 SV=1	[more]

BLAST of CSPI01G19210 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G17240.1	4.4e-29	56.34	unknown protein	[more]
AT3G24506.1	2.2e-28	60.00	unknown protein	[more]

BLAST of CSPI01G19210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449461977\|ref\|XP_004148718.1\|	9.8e-71	100.00	PREDICTED: actin-binding protein [Cucumis sativus]	[more]
gi\|659126822\|ref\|XP_008463385.1\|	8.9e-56	84.93	PREDICTED: uncharacterized protein LOC103501552 [Cucumis melo]	[more]
gi\|645244661\|ref\|XP_008228525.1\|	1.5e-31	60.13	PREDICTED: coiled-coil domain-containing protein 9-like [Prunus mume]	[more]
gi\|567918296\|ref\|XP_006451154.1\|	2.9e-30	60.26	hypothetical protein CICLE_v10009718mg [Citrus clementina]	[more]
gi\|641831847\|gb\|KDO50895.1\|	2.9e-30	58.97	hypothetical protein CISIN_1g030986mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
biological_process	GO:0015031	protein transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016874	ligase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G19210.1	CSPI01G19210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35713	FAMILY NOT NAMED	coord: 53..145 score: 6.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G19210	Cla010630	Watermelon (97103) v1	cpiwmB103
CSPI01G19210	Csa1G366960	Cucumber (Chinese Long) v2	cpicuB001
CSPI01G19210	MELO3C025336	Melon (DHL92) v3.5.1	cpimeB059
CSPI01G19210	Lsi06G008810	Bottle gourd (USVL1VR-Ls)	cpilsiB063
CSPI01G19210	MELO3C025336.2	Melon (DHL92) v3.6.1	cpimedB053
CSPI01G19210	CsaV3_1G030480	Cucumber (Chinese Long) v3	cpicucB000
CSPI01G19210	Cla97C06G118250	Watermelon (97103) v2	cpiwmbB084
CSPI01G19210	Bhi02G000936	Wax gourd	cpiwgoB102
CSPI01G19210	Cucsa.235530	Cucumber (Gy14) v1	cgycpiB348
CSPI01G19210	CmaCh11G006040	Cucurbita maxima (Rimu)	cmacpiB102
CSPI01G19210	CmaCh10G006100	Cucurbita maxima (Rimu)	cmacpiB065
CSPI01G19210	CmoCh10G006500	Cucurbita moschata (Rifu)	cmocpiB057
CSPI01G19210	CmoCh11G006090	Cucurbita moschata (Rifu)	cmocpiB094
CSPI01G19210	Cp4.1LG04g09980	Cucurbita pepo (Zucchini)	cpecpiB643
CSPI01G19210	Cp4.1LG18g04370	Cucurbita pepo (Zucchini)	cpecpiB356
CSPI01G19210	CsGy1G019140	Cucumber (Gy14) v2	cgybcpiB002
CSPI01G19210	Carg09859	Silver-seed gourd	carcpiB0140
CSPI01G19210	Carg12191	Silver-seed gourd	carcpiB0041

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G19210	Wild cucumber (PI 183967)	cpicpiB009
CSPI01G19210	Cucumber (Gy14) v1	cgycpiB151
CSPI01G19210	Cucurbita maxima (Rimu)	cmacpiB792
CSPI01G19210	Melon (DHL92) v3.5.1	cpimeB077
CSPI01G19210	Watermelon (Charleston Gray)	cpiwcgB009
CSPI01G19210	Watermelon (97103) v1	cpiwmB084
CSPI01G19210	Silver-seed gourd	carcpiB0601