Cucsa.232940 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GAAGATAATGATCGAGTCGTGTCATTTTCTCGTTCGCAGCTGCTCCTCTGTTCTTCTTCCCGCTCGGAGGTAATCAACTGGTCCTTCATTTGTTGCTTTACCCCTTCAATTTTTCACCTTTCATTCTCTTAACAGTTACTTTTCATCCTCTTTCTGAATCGATAATCGAAATTTTCTCCTCCTTTAACATGATTAATGTTAAATAAGATTTATCATGAGTTTGAAACATTGTCTTGAATGCTACATCTGAATCTGATATATTGCTCAGTTTTATTAGAGCTTTCTGACTGAAGTTCATTCACTAAAGAACTCCCAAATCGGAGTTTtGGGTATATATATATATATATATATATATATGTTGCAATGCAAAGGCAGAACCAGAATGTACTGCAATGTAAAACTTTAATCAGTTTTGGATTAAACCCAAATGAGAAAATGGAGCCGAGAATCCCCATTTTGATTCCCCGCTGGCTTTCTTCGGAGAAAGAGCCCGTTCGATTGTCGATTACAAGACCCGAAGTTCCAAGAAACCAATTGTTATACAAGAGTAAAATGAGAGTTAATGCTGGAAATCAGGGGGAGTTGAGTGATGAGGATGATGATCTTTGCCCTGTAGACTGTGTGCGGGAATTCAAGACGGATGAAGAGTTCATTAAAATTCTAGACAAGGCGAAGGAAAACGGTGGTTTGGTAGTTGTGGACTTTTATCGAACATCTTGTGGAAGTTGCAAATATATAGAACAAGGGTTTGCAAAATTGTGCAAGGGGTCTGGCGATCAACAGGCACCGGTTATCTTCTTGAAGCATAATGTGAGTGTTTCATATTAGCCATGTTTTCTCGGGAAATTGACTTCCATTACAATCACTGACTGGTTATTATGCTTTGAATTTGATTGTGTGTTTTAGGTCATGGATGAATATGATGAACAATCTGAGGTTGCTGAACGGCTAAGGATCAAGGTAAGCTTGTTTTCTCTTCTTGATTGCCAAGTTGGGTTTGTGTTGAATTAGACTGAAGTTTTGACAAACTGTTCTTGGTCTCTTCGGAAACTTTCTGTTTGCTTTGAGATATTAAAATCTTCTTATTCTAATTATTGTAAGGTCCGATTTTAATTTTAATTTTtAATTTTTAATGATTTCAGTAATTTTTATTATTATTAGATTTTTGCTGCATTAAAAAACATAACTAATATAATATTTATTGTTGTTTCAAACATCATCAAGAAAGTATTAAGAAATGGTTAAATTACAAATTTTGTCATTTGAAGAAAATTAGTATTTAGTTTGAAAAGTTATGTTTAGTCCTTAACAATACCTCATGAATATTCATTATAATTTGATTTAGAGGTAGAAAACCATTAAAATTAGTGTTTGTTTGTGATTGAGTTAATTAAGTTCCTAAAATGTTAATGTTTATGATAAACAAGTTTTGTTTTtGtATTTTAGTTCACTAATGTTGAAATTTGATGATGGCATTGCAGACTGTGCCACTGTTCCACTTCTACAAAGATGGGGTCTTATTAGAAGCATTTCCTACAAGAGATAAAGAGAGGATCCTCACAGCCATAACCAAATATTCATCTTCTCCACTTCAAATTTAATTTGATCATTATTCTTGTGGCCTTGCACCTTTTGTAAAATAATAATACCAAACAAAACCACGAATCTGATACAAACCCCATCCAGCCCTTTATGTGACAATGTAAGATCTTGGGAGGAATCATATGCTTGATTATCATATTTTGTGCTCTGTAAGATCATAAATTAGAAGATGAGCCTCTTGTAGTTTGTGCTTTTGTTTAATCTCTTGTTTGAAATAGGTAGCAGCAGAAAGGACAA GAAGATAATGATCGAGTCGTGTCATTTTCTCGTTCGCAGCTGCTCCTCTGTTCTTCTTCCCGCTCGGAGTTTTATTAGAGCTTTCTGACTGAAGTTCATTCACTAAAGAACTCCCAAATCGGAGTTTTGGGtatatatatatatatatatatatatatGTTGCAATGCAAAGGCAGAACCAGAATGTACTGCAATGTAAAACTTTAATCAGTTTTGGATTAAACCCAAATGAGAAAATGGAGCCGAGAATCCCCATTTTGATTCCCCGCTGGCTTTCTTCGGAGAAAGAGCCCGTTCGATTGTCGATTACAAGACCCGAAGTTCCAAGAAACCAATTGTTATACAAGAGTAAAATGAGAGTTAATGCTGGAAATCAGGGGGAGTTGAGTGATGAGGATGATGATCTTTGCCCTGTAGACTGTGTGCGGGAATTCAAGACGGATGAAGAGTTCATTAAAATTCTAGACAAGGCGAAGGAAAACGGTGGTTTGGTAGTTGTGGACTTTTATCGAACATCTTGTGGAAGTTGCAAATATATAGAACAAGGGTTTGCAAAATTGTGCAAGGGGTCTGGCGATCAACAGGCACCGGTTATCTTCTTGAAGCATAATGTCATGGATGAATATGATGAACAATCTGAGGTTGCTGAACGGCTAAGGATCAAGACTGTGCCACTGTTCCACTTCTACAAAGATGGGGTCTTATTAGAAGCATTTCCTACAAGAGATAAAGAGAGGATCCTCACAGCCATAACCAAATATTCATCTTCTCCACTTCAAATTTAATTTGATCATTATTCTTGTGGCCTTGCACCTTTTGTAAAATAATAATACCAAACAAAACCACGAATCTGATACAAACCCCATCCAGCCCTTTATGTGACAATGTAAGATCTTGGGAGGAATCATATGCTTGATTATCATATTTTGTGCTCTGTAAGATCATAAATTAGAAGATGAGCCTCTTGTAGTTTGTGCTTTTGTTTAATCTCTTGTTTGAAATAGGTAGCAGCAGAAAGGACAA ATGCAAAGGCAGAACCAGAATGTACTGCAATGTAAAACTTTAATCAGTTTTGGATTAAACCCAAATGAGAAAATGGAGCCGAGAATCCCCATTTTGATTCCCCGCTGGCTTTCTTCGGAGAAAGAGCCCGTTCGATTGTCGATTACAAGACCCGAAGTTCCAAGAAACCAATTGTTATACAAGAGTAAAATGAGAGTTAATGCTGGAAATCAGGGGGAGTTGAGTGATGAGGATGATGATCTTTGCCCTGTAGACTGTGTGCGGGAATTCAAGACGGATGAAGAGTTCATTAAAATTCTAGACAAGGCGAAGGAAAACGGTGGTTTGGTAGTTGTGGACTTTTATCGAACATCTTGTGGAAGTTGCAAATATATAGAACAAGGGTTTGCAAAATTGTGCAAGGGGTCTGGCGATCAACAGGCACCGGTTATCTTCTTGAAGCATAATGTCATGGATGAATATGATGAACAATCTGAGGTTGCTGAACGGCTAAGGATCAAGACTGTGCCACTGTTCCACTTCTACAAAGATGGGGTCTTATTAGAAGCATTTCCTACAAGAGATAAAGAGAGGATCCTCACAGCCATAACCAAATATTCATCTTCTCCACTTCAAATTTAA MQRQNQNVLQCKTLISFGLNPNEKMEPRIPILIPRWLSSEKEPVRLSITRPEVPRNQLLYKSKMRVNAGNQGELSDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPVIFLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAITKYSSSPLQI*
BLAST of Cucsa.232940 vs. Swiss-Prot
Match: TRL4_ARATH (Thioredoxin-like 4, chloroplastic OS=Arabidopsis thaliana GN=At1g07700 PE=2 SV=1) HSP 1 Score: 222.6 bits (566), Expect = 3.9e-57 Identity = 113/164 (68.90%), Postives = 131/164 (79.88%), Query Frame = 1
BLAST of Cucsa.232940 vs. Swiss-Prot
Match: TRL4_ORYSJ (Thioredoxin-like 4, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0567100 PE=2 SV=1) HSP 1 Score: 201.1 bits (510), Expect = 1.2e-50 Identity = 94/132 (71.21%), Postives = 113/132 (85.61%), Query Frame = 1
BLAST of Cucsa.232940 vs. Swiss-Prot
Match: THIO_MOUSE (Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3) HSP 1 Score: 62.8 bits (151), Expect = 5.2e-09 Identity = 41/114 (35.96%), Postives = 63/114 (55.26%), Query Frame = 1
BLAST of Cucsa.232940 vs. Swiss-Prot
Match: THIO_RAT (Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2) HSP 1 Score: 60.8 bits (146), Expect = 2.0e-08 Identity = 40/114 (35.09%), Postives = 62/114 (54.39%), Query Frame = 1
BLAST of Cucsa.232940 vs. Swiss-Prot
Match: TRL2_ORYSJ (Thioredoxin-like 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0200100 PE=2 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 4.4e-08 Identity = 47/153 (30.72%), Postives = 76/153 (49.67%), Query Frame = 1
BLAST of Cucsa.232940 vs. TrEMBL
Match: A0A0A0LP39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G357300 PE=4 SV=1) HSP 1 Score: 419.1 bits (1076), Expect = 3.2e-114 Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 1
BLAST of Cucsa.232940 vs. TrEMBL
Match: A0A067KQ52_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04261 PE=4 SV=1) HSP 1 Score: 260.8 bits (665), Expect = 1.4e-66 Identity = 130/208 (62.50%), Postives = 156/208 (75.00%), Query Frame = 1
BLAST of Cucsa.232940 vs. TrEMBL
Match: U5FTV4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s02920g PE=4 SV=1) HSP 1 Score: 258.1 bits (658), Expect = 9.3e-66 Identity = 139/215 (64.65%), Postives = 160/215 (74.42%), Query Frame = 1
BLAST of Cucsa.232940 vs. TrEMBL
Match: U5FNX3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s02920g PE=4 SV=1) HSP 1 Score: 258.1 bits (658), Expect = 9.3e-66 Identity = 139/215 (64.65%), Postives = 160/215 (74.42%), Query Frame = 1
BLAST of Cucsa.232940 vs. TrEMBL
Match: B9R7C2_RICCO (Thioredoxin, putative OS=Ricinus communis GN=RCOM_1590520 PE=4 SV=1) HSP 1 Score: 252.7 bits (644), Expect = 3.9e-64 Identity = 133/217 (61.29%), Postives = 155/217 (71.43%), Query Frame = 1
BLAST of Cucsa.232940 vs. TAIR10
Match: AT1G07700.3 (AT1G07700.3 Thioredoxin superfamily protein) HSP 1 Score: 222.6 bits (566), Expect = 2.2e-58 Identity = 113/164 (68.90%), Postives = 131/164 (79.88%), Query Frame = 1
BLAST of Cucsa.232940 vs. TAIR10
Match: AT4G26160.1 (AT4G26160.1 atypical CYS HIS rich thioredoxin 1) HSP 1 Score: 59.3 bits (142), Expect = 3.2e-09 Identity = 33/83 (39.76%), Postives = 49/83 (59.04%), Query Frame = 1
BLAST of Cucsa.232940 vs. TAIR10
Match: AT5G42980.1 (AT5G42980.1 thioredoxin 3) HSP 1 Score: 58.5 bits (140), Expect = 5.5e-09 Identity = 37/110 (33.64%), Postives = 58/110 (52.73%), Query Frame = 1
BLAST of Cucsa.232940 vs. TAIR10
Match: AT4G29670.2 (AT4G29670.2 atypical CYS HIS rich thioredoxin 2) HSP 1 Score: 57.8 bits (138), Expect = 9.4e-09 Identity = 35/94 (37.23%), Postives = 53/94 (56.38%), Query Frame = 1
BLAST of Cucsa.232940 vs. TAIR10
Match: AT3G51030.1 (AT3G51030.1 thioredoxin H-type 1) HSP 1 Score: 55.8 bits (133), Expect = 3.6e-08 Identity = 38/108 (35.19%), Postives = 56/108 (51.85%), Query Frame = 1
BLAST of Cucsa.232940 vs. NCBI nr
Match: gi|449466338|ref|XP_004150883.1| (PREDICTED: thioredoxin-like 4, chloroplastic [Cucumis sativus]) HSP 1 Score: 419.1 bits (1076), Expect = 4.5e-114 Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 1
BLAST of Cucsa.232940 vs. NCBI nr
Match: gi|659087759|ref|XP_008444622.1| (PREDICTED: thioredoxin-like 4, chloroplastic [Cucumis melo]) HSP 1 Score: 407.1 bits (1045), Expect = 1.8e-110 Identity = 199/206 (96.60%), Postives = 204/206 (99.03%), Query Frame = 1
BLAST of Cucsa.232940 vs. NCBI nr
Match: gi|802592579|ref|XP_012071661.1| (PREDICTED: thioredoxin-like 4, chloroplastic [Jatropha curcas]) HSP 1 Score: 260.8 bits (665), Expect = 2.1e-66 Identity = 130/208 (62.50%), Postives = 156/208 (75.00%), Query Frame = 1
BLAST of Cucsa.232940 vs. NCBI nr
Match: gi|743787093|ref|XP_011029989.1| (PREDICTED: thioredoxin-like 4, chloroplastic isoform X2 [Populus euphratica]) HSP 1 Score: 258.1 bits (658), Expect = 1.3e-65 Identity = 136/214 (63.55%), Postives = 156/214 (72.90%), Query Frame = 1
BLAST of Cucsa.232940 vs. NCBI nr
Match: gi|566202129|ref|XP_006374940.1| (hypothetical protein POPTR_0014s02920g [Populus trichocarpa]) HSP 1 Score: 258.1 bits (658), Expect = 1.3e-65 Identity = 139/215 (64.65%), Postives = 160/215 (74.42%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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