CsaV3_2G027800 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G027800
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionThioredoxin
Locationchr2 : 18397448 .. 18398613 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCCGAGAATCCCCATTTTGATTCCCCGCTGGCTTTCTTCGGAGAAAGAGCCCGTTCGATTGTCGATTACAAGACCCGAAGTTCCAAGAAACCAATTGTTATACAAGAGTAAAATGAGAGTTAATGCTGGAAATCAGGGGGAGTTGAGTGATGAGGATGATGATCTTTGCCCTGTAGACTGTGTGCGGGAATTCAAGACGGATGAAGAGTTCATTAAAATTCTAGACAAGGCGAAGGAAAACGGTGGTTTGGTAGTTGTGGACTTTTATCGAACATCTTGTGGAAGTTGCAAATATATAGAACAAGGGTTTGCAAAATTGTGCAAGGGGTCTGGCGATCAACAGGCACCGGTTATCTTCTTGAAGCATAATGTGAGTGTTTCATATTAGCCATGTTTTCTCGGGAAATTGACTTCCATTACAATCACTGACTGGTTATTATGCTTTGAATTTGATTGTGTGTTTTAGGTCATGGATGAATATGATGAACAATCTGAGGTTGCTGAACGGCTAAGGATCAAGGTAAGCTTGTTTTCTCTTCTTGATTGCCAAGTTGGGTTTGTGTTGAATTAGACTGAAGTTTTGACAAACTGTTCTTGGTCTCTTCGGAAACTTTCTGTTTGCTTTGAGATATTAAAATCTTCTTATTCTAATTATTGTAAGGTCCGATTTTAATTTTAATTTTTAATTTTTAATGATTTCAGTAATTTTTATTATTATTAGATTTTTGCTGCATTAAAAAACATAACTAATATAATATTTATTGTTGTTTCAAACATCATCAAGAAAGTATTAAGAAATGGTTAAATTACAAATTTTGTCATTTGAAGAAAATTAGTATTTAGTTTGAAAAGTTATGTTTAGTCCTTAACAATACCTCATGAATATTCATTATAATTTGATTTAGAGGTAGAAAACCATTAAAATTAGTGTTTGTTTGTGATTGAGTTAATTAAGTTCCTAAAATGTTAATGTTTATGATAAACAAGTTTTGTTTTTGTATTTTAGTTCACTAATGTTGAAATTTGATGATGGCATTGCAGACTGTGCCACTGTTCCACTTCTACAAAGATGGGGTCTTATTAGAAGCATTTCCTACAAGAGATAAAGAGAGGATCCTCACAGCCATAACCAAATATTCATCTTCTCCACTTCAAATTTAA

mRNA sequence

ATGGAGCCGAGAATCCCCATTTTGATTCCCCGCTGGCTTTCTTCGGAGAAAGAGCCCGTTCGATTGTCGATTACAAGACCCGAAGTTCCAAGAAACCAATTGTTATACAAGAGTAAAATGAGAGTTAATGCTGGAAATCAGGGGGAGTTGAGTGATGAGGATGATGATCTTTGCCCTGTAGACTGTGTGCGGGAATTCAAGACGGATGAAGAGTTCATTAAAATTCTAGACAAGGCGAAGGAAAACGGTGGTTTGGTAGTTGTGGACTTTTATCGAACATCTTGTGGAAGTTGCAAATATATAGAACAAGGGTTTGCAAAATTGTGCAAGGGGTCTGGCGATCAACAGGCACCGGTTATCTTCTTGAAGCATAATGTCATGGATGAATATGATGAACAATCTGAGGTTGCTGAACGGCTAAGGATCAAGACTGTGCCACTGTTCCACTTCTACAAAGATGGGGTCTTATTAGAAGCATTTCCTACAAGAGATAAAGAGAGGATCCTCACAGCCATAACCAAATATTCATCTTCTCCACTTCAAATTTAA

Coding sequence (CDS)

ATGGAGCCGAGAATCCCCATTTTGATTCCCCGCTGGCTTTCTTCGGAGAAAGAGCCCGTTCGATTGTCGATTACAAGACCCGAAGTTCCAAGAAACCAATTGTTATACAAGAGTAAAATGAGAGTTAATGCTGGAAATCAGGGGGAGTTGAGTGATGAGGATGATGATCTTTGCCCTGTAGACTGTGTGCGGGAATTCAAGACGGATGAAGAGTTCATTAAAATTCTAGACAAGGCGAAGGAAAACGGTGGTTTGGTAGTTGTGGACTTTTATCGAACATCTTGTGGAAGTTGCAAATATATAGAACAAGGGTTTGCAAAATTGTGCAAGGGGTCTGGCGATCAACAGGCACCGGTTATCTTCTTGAAGCATAATGTCATGGATGAATATGATGAACAATCTGAGGTTGCTGAACGGCTAAGGATCAAGACTGTGCCACTGTTCCACTTCTACAAAGATGGGGTCTTATTAGAAGCATTTCCTACAAGAGATAAAGAGAGGATCCTCACAGCCATAACCAAATATTCATCTTCTCCACTTCAAATTTAA

Protein sequence

MEPRIPILIPRWLSSEKEPVRLSITRPEVPRNQLLYKSKMRVNAGNQGELSDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPVIFLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAITKYSSSPLQI
Homology
[Close]
BLAST of CsaV3_2G027800 vs. NCBI nr
Match: XP_004150883.1 (PREDICTED: thioredoxin-like 4, chloroplastic [Cucumis sativus] >XP_011649582.1 PREDICTED: thioredoxin-like 4, chloroplastic [Cucumis sativus] >KGN62507.1 hypothetical protein Csa_2G357300 [Cucumis sativus])

HSP 1 Score: 373.2 bits (957), Expect = 4.9e-100
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0 

Query: 1   MEPRIPILIPRWLSSEKEPVRLSITRPEVPRNQLLYKSKMRVNAGNQGELSDEDDDLCPV 60
           MEPRIPILIPRWLSSEKEPVRLSITRPEVPRNQLLYKSKMRVNAGNQGELSDEDDDLCPV
Sbjct: 25  MEPRIPILIPRWLSSEKEPVRLSITRPEVPRNQLLYKSKMRVNAGNQGELSDEDDDLCPV 84

Query: 61  DCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPVI 120
           DCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPVI
Sbjct: 85  DCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPVI 144

Query: 121 FLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAITKYSSSPL 180
           FLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAITKYSSSPL
Sbjct: 145 FLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAITKYSSSPL 204

Query: 181 QI 183
           QI
Sbjct: 205 QI 206

[Close]
BLAST of CsaV3_2G027800 vs. NCBI nr
Match: XP_008444622.1 (PREDICTED: thioredoxin-like 4, chloroplastic [Cucumis melo])

HSP 1 Score: 363.2 bits (931), Expect = 5.1e-97
Identity = 176/182 (96.70%), Postives = 180/182 (98.90%), Query Frame = 0 

Query: 1   MEPRIPILIPRWLSSEKEPVRLSITRPEVPRNQLLYKSKMRVNAGNQGELSDEDDDLCPV 60
           +E RIPILIPRWLSSEKEPVRLSITRPEVPR+QLLYKSKMRVNAGNQGE+ DEDDDLCPV
Sbjct: 25  LESRIPILIPRWLSSEKEPVRLSITRPEVPRHQLLYKSKMRVNAGNQGEMGDEDDDLCPV 84

Query: 61  DCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPVI 120
           DCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPVI
Sbjct: 85  DCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPVI 144

Query: 121 FLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAITKYSSSPL 180
           FLKHNVMDEYDEQSEVAERLRIK+VPLFHFYKDGVLLEAFPTRDKERILTAITKYSSSPL
Sbjct: 145 FLKHNVMDEYDEQSEVAERLRIKSVPLFHFYKDGVLLEAFPTRDKERILTAITKYSSSPL 204

Query: 181 QI 183
           QI
Sbjct: 205 QI 206

[Close]
BLAST of CsaV3_2G027800 vs. NCBI nr
Match: XP_023522900.1 (thioredoxin-like 4, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305.1 bits (780), Expect = 1.6e-79
Identity = 152/183 (83.06%), Postives = 165/183 (90.16%), Query Frame = 0 

Query: 5   IPILIPRWLSSEKEPVRLSITRPEVP-----RNQLLYKSKMRVNAGNQGELSDEDDDLCP 64
           IPI IP WL SE   VRLSITRPE P     R++L++KSK RV AGNQG LSDEDDDLCP
Sbjct: 25  IPISIPFWL-SENPHVRLSITRPEAPPYLSIRHELMFKSKPRVAAGNQGGLSDEDDDLCP 84

Query: 65  VDCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPV 124
           V+CVREFKTDEEFI+ILD+AKE+G LVVVDFYRTSCGSCKYIEQGFAKLC+GSGDQ+APV
Sbjct: 85  VECVREFKTDEEFIRILDRAKESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAPV 144

Query: 125 IFLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAITKYSSSP 183
           IFLKHNV+DEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERIL AITKYSS+ 
Sbjct: 145 IFLKHNVVDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILAAITKYSSTA 204

[Close]
BLAST of CsaV3_2G027800 vs. NCBI nr
Match: XP_022951253.1 (thioredoxin-like 4, chloroplastic [Cucurbita moschata])

HSP 1 Score: 303.5 bits (776), Expect = 4.8e-79
Identity = 151/183 (82.51%), Postives = 165/183 (90.16%), Query Frame = 0 

Query: 5   IPILIPRWLSSEKEPVRLSITRPEVP-----RNQLLYKSKMRVNAGNQGELSDEDDDLCP 64
           IPI IP WL SE   VRLSITRPE P     R++L++KSK RV AGNQG LSDEDDDLCP
Sbjct: 63  IPISIPFWL-SENPHVRLSITRPEAPPYLSIRHELMFKSKPRVAAGNQGGLSDEDDDLCP 122

Query: 65  VDCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPV 124
           V+CVREFKTDEEFI+IL++AKE+G LVVVDFYRTSCGSCKYIEQGFAKLC+GSGDQ+APV
Sbjct: 123 VECVREFKTDEEFIRILERAKESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAPV 182

Query: 125 IFLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAITKYSSSP 183
           IFLKHNV+DEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERIL AITKYSS+ 
Sbjct: 183 IFLKHNVVDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILAAITKYSSTA 242

[Close]
BLAST of CsaV3_2G027800 vs. NCBI nr
Match: XP_023537391.1 (thioredoxin-like 4, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 302.8 bits (774), Expect = 8.2e-79
Identity = 151/183 (82.51%), Postives = 164/183 (89.62%), Query Frame = 0 

Query: 5   IPILIPRWLSSEKEPVRLSITRPEVP-----RNQLLYKSKMRVNAGNQGELSDEDDDLCP 64
           IPI IP WL SE   VRLSITRPE P     R++L++KSK RV AGNQ  LSDEDDDLCP
Sbjct: 63  IPISIPFWL-SENPHVRLSITRPEAPPYLSIRHELMFKSKPRVAAGNQAGLSDEDDDLCP 122

Query: 65  VDCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPV 124
           V+CVREFKTDEEFI+ILD+AKE+G LVVVDFYRTSCGSCKYIEQGFAKLC+GSGDQ+APV
Sbjct: 123 VECVREFKTDEEFIRILDRAKESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAPV 182

Query: 125 IFLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAITKYSSSP 183
           IFLKHNV+DEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERIL AITKYSS+ 
Sbjct: 183 IFLKHNVVDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILAAITKYSSTA 242

[Close]
BLAST of CsaV3_2G027800 vs. TAIR10
Match: AT1G07700.3 (Thioredoxin superfamily protein)

HSP 1 Score: 225.7 bits (574), Expect = 2.3e-59
Identity = 113/164 (68.90%), Postives = 131/164 (79.88%), Query Frame = 0 

Query: 20  VRLSITRPEVPRNQLLYKSKMR-----VNAGNQGELSDEDDDLCPVDCVREFKTDEEFIK 79
           VRLS  R E   N  +  +  R     ++  N  ELSDE+DDLCPV+CV EFKTD+E + 
Sbjct: 52  VRLSFPRAESSINITMGCTLQRGIAKSLSQENLVELSDENDDLCPVECVTEFKTDDELLS 111

Query: 80  ILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPVIFLKHNVMDEYDEQS 139
           +L+K+KE   LVVVDFYRT+CGSCKYIEQGF+KLCK SGDQ+APVIFLKHNV+DEYDEQS
Sbjct: 112 VLEKSKETNSLVVVDFYRTACGSCKYIEQGFSKLCKQSGDQEAPVIFLKHNVVDEYDEQS 171

Query: 140 EVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAITKYSSS 179
           EVAERLRIK VPLFHFYK+GVLLE+F TRDKERI  AI KY+SS
Sbjct: 172 EVAERLRIKAVPLFHFYKNGVLLESFATRDKERIDAAILKYTSS 215

[Close]
BLAST of CsaV3_2G027800 vs. TAIR10
Match: AT5G42980.1 (thioredoxin 3)

HSP 1 Score: 62.0 bits (149), Expect = 4.4e-10
Identity = 36/110 (32.73%), Postives = 58/110 (52.73%), Query Frame = 0 

Query: 68  TDEEFIKILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPVIFLKHNVM 127
           T E++ + L  A E+  L+V+DF  T C  C++I   FA L K    +   V+F K +V 
Sbjct: 12  TVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAK----KHLDVVFFKVDV- 71

Query: 128 DEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAITKYSS 178
              DE + VAE  +++ +P F F K+G + E      KE I+  + K+ +
Sbjct: 72  ---DELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKHKT 113

[Close]
BLAST of CsaV3_2G027800 vs. TAIR10
Match: AT4G26160.1 (atypical CYS HIS rich thioredoxin 1)

HSP 1 Score: 60.8 bits (146), Expect = 9.8e-10
Identity = 33/83 (39.76%), Postives = 49/83 (59.04%), Query Frame = 0 

Query: 70  EEFIKILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPVIFLKHNVMDE 129
           E+F+  L  A +   LV+VDFY T CGSC+ +   F KLCK +  +   ++FLK N    
Sbjct: 102 EQFLNALKDAGDR--LVIVDFYGTWCGSCRAM---FPKLCK-TAKEHPNILFLKVN---- 161

Query: 130 YDEQSEVAERLRIKTVPLFHFYK 153
           +DE   + + L +K +P FHFY+
Sbjct: 162 FDENKSLCKSLNVKVLPYFHFYR 174

[Close]
BLAST of CsaV3_2G027800 vs. TAIR10
Match: AT3G51030.1 (thioredoxin H-type 1)

HSP 1 Score: 59.3 bits (142), Expect = 2.9e-09
Identity = 38/108 (35.19%), Postives = 56/108 (51.85%), Query Frame = 0 

Query: 68  TDEEFIKILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPVIFLKHNVM 127
           T E + + L KA E+  LVVVDF  + CG C++I   FA L K    +   V+FLK +  
Sbjct: 13  TVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAK----KLPNVLFLKVDT- 72

Query: 128 DEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAITKY 176
              DE   VA    I+ +P F F K+G +L+      K+ + + I K+
Sbjct: 73  ---DELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKH 112

[Close]
BLAST of CsaV3_2G027800 vs. TAIR10
Match: AT4G29670.2 (atypical CYS HIS rich thioredoxin 2)

HSP 1 Score: 59.3 bits (142), Expect = 2.9e-09
Identity = 35/94 (37.23%), Postives = 53/94 (56.38%), Query Frame = 0 

Query: 65  EFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPVIFLKH 124
           +  + EEF+  L  A E   LV+V+FY T C SC+ +   F KLCK +  +   ++FLK 
Sbjct: 107 DIHSTEEFLSALSGAGER--LVIVEFYGTWCASCRAL---FPKLCK-TAVEHPDIVFLKV 166

Query: 125 NVMDEYDEQSEVAERLRIKTVPLFHFYK--DGVL 157
           N    +DE   + + L ++ +P FHFY+  DG L
Sbjct: 167 N----FDENKPMCKSLNVRVLPFFHFYRGADGQL 190

[Close]
BLAST of CsaV3_2G027800 vs. Swiss-Prot
Match: sp|Q9C5C5|TRL4_ARATH (Thioredoxin-like 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g07700 PE=2 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 4.1e-58
Identity = 113/164 (68.90%), Postives = 131/164 (79.88%), Query Frame = 0 

Query: 20  VRLSITRPEVPRNQLLYKSKMR-----VNAGNQGELSDEDDDLCPVDCVREFKTDEEFIK 79
           VRLS  R E   N  +  +  R     ++  N  ELSDE+DDLCPV+CV EFKTD+E + 
Sbjct: 39  VRLSFPRAESSINITMGCTLQRGIAKSLSQENLVELSDENDDLCPVECVTEFKTDDELLS 98

Query: 80  ILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPVIFLKHNVMDEYDEQS 139
           +L+K+KE   LVVVDFYRT+CGSCKYIEQGF+KLCK SGDQ+APVIFLKHNV+DEYDEQS
Sbjct: 99  VLEKSKETNSLVVVDFYRTACGSCKYIEQGFSKLCKQSGDQEAPVIFLKHNVVDEYDEQS 158

Query: 140 EVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAITKYSSS 179
           EVAERLRIK VPLFHFYK+GVLLE+F TRDKERI  AI KY+SS
Sbjct: 159 EVAERLRIKAVPLFHFYKNGVLLESFATRDKERIDAAILKYTSS 202

[Close]
BLAST of CsaV3_2G027800 vs. Swiss-Prot
Match: sp|Q6YTI3|TRL4_ORYSJ (Thioredoxin-like 4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0567100 PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 3.2e-50
Identity = 93/124 (75.00%), Postives = 107/124 (86.29%), Query Frame = 0 

Query: 58  CPVDCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQQA 117
           CPV+CV EFKT+EE  ++L++AK  G LVVVDF+R SCGSCKYIEQGF KLCKGSGD  +
Sbjct: 80  CPVECVTEFKTEEELARVLERAKATGALVVVDFFRPSCGSCKYIEQGFMKLCKGSGDHGS 139

Query: 118 PVIFLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAITKYS- 177
            V+FLKHNV+DEYDEQSEVA+RLRIK VPLFHFYK+GVLLEAF TRDKERI+ AI KY+ 
Sbjct: 140 SVVFLKHNVIDEYDEQSEVADRLRIKVVPLFHFYKNGVLLEAFATRDKERIIAAIQKYTA 199

Query: 178 -SSP 180
            SSP
Sbjct: 200 PSSP 203

[Close]
BLAST of CsaV3_2G027800 vs. Swiss-Prot
Match: sp|P10639|THIO_MOUSE (Thioredoxin OS=Mus musculus OX=10090 GN=Txn PE=1 SV=3)

HSP 1 Score: 66.2 bits (160), Expect = 4.2e-10
Identity = 41/114 (35.96%), Postives = 63/114 (55.26%), Query Frame = 0 

Query: 63  VREFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPVIFL 122
           V+  ++ E F + L  A +   LVVVDF  T CG CK I+  F  LC    D+ + V+FL
Sbjct: 2   VKLIESKEAFQEALAAAGDK--LVVVDFSATWCGPCKMIKPFFHSLC----DKYSNVVFL 61

Query: 123 KHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAITKYS 177
           + +V    D+  +VA    +K +P F FYK G  +  F   +KE++  +IT+Y+
Sbjct: 62  EVDV----DDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASITEYA 105

[Close]
BLAST of CsaV3_2G027800 vs. Swiss-Prot
Match: sp|P11232|THIO_RAT (Thioredoxin OS=Rattus norvegicus OX=10116 GN=Txn PE=1 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-09
Identity = 40/114 (35.09%), Postives = 62/114 (54.39%), Query Frame = 0 

Query: 63  VREFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPVIFL 122
           V+  ++ E F + L  A +   LVVVDF  T CG CK I+  F  LC    D+ + V+FL
Sbjct: 2   VKLIESKEAFQEALAAAGDK--LVVVDFSATWCGPCKMIKPFFHSLC----DKYSNVVFL 61

Query: 123 KHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAITKYS 177
           + +V    D+  +VA    +K +P F FYK G  +  F   +KE++   IT+++
Sbjct: 62  EVDV----DDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEATITEFA 105

[Close]
BLAST of CsaV3_2G027800 vs. Swiss-Prot
Match: sp|Q0D840|TRXH1_ORYSJ (Thioredoxin H1 OS=Oryza sativa subsp. japonica OX=39947 GN=TRXH PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.6e-09
Identity = 36/106 (33.96%), Postives = 56/106 (52.83%), Query Frame = 0 

Query: 70  EEFIKILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPVIFLKHNVMDE 129
           +EF   + KAKE G +V++DF  + CG C++I   FA+  K    +    +FLK +V   
Sbjct: 15  DEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAK----KFPGAVFLKVDV--- 74

Query: 130 YDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAITKY 176
            DE  EVAE+  ++ +P F F KDG   +      K+ +   I K+
Sbjct: 75  -DELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKH 112

[Close]
BLAST of CsaV3_2G027800 vs. TrEMBL
Match: tr|A0A0A0LP39|A0A0A0LP39_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G357300 PE=4 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 3.3e-100
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0 

Query: 1   MEPRIPILIPRWLSSEKEPVRLSITRPEVPRNQLLYKSKMRVNAGNQGELSDEDDDLCPV 60
           MEPRIPILIPRWLSSEKEPVRLSITRPEVPRNQLLYKSKMRVNAGNQGELSDEDDDLCPV
Sbjct: 25  MEPRIPILIPRWLSSEKEPVRLSITRPEVPRNQLLYKSKMRVNAGNQGELSDEDDDLCPV 84

Query: 61  DCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPVI 120
           DCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPVI
Sbjct: 85  DCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPVI 144

Query: 121 FLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAITKYSSSPL 180
           FLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAITKYSSSPL
Sbjct: 145 FLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAITKYSSSPL 204

Query: 181 QI 183
           QI
Sbjct: 205 QI 206

[Close]
BLAST of CsaV3_2G027800 vs. TrEMBL
Match: tr|A0A1S3BBI1|A0A1S3BBI1_CUCME (thioredoxin-like 4, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487891 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 3.4e-97
Identity = 176/182 (96.70%), Postives = 180/182 (98.90%), Query Frame = 0 

Query: 1   MEPRIPILIPRWLSSEKEPVRLSITRPEVPRNQLLYKSKMRVNAGNQGELSDEDDDLCPV 60
           +E RIPILIPRWLSSEKEPVRLSITRPEVPR+QLLYKSKMRVNAGNQGE+ DEDDDLCPV
Sbjct: 25  LESRIPILIPRWLSSEKEPVRLSITRPEVPRHQLLYKSKMRVNAGNQGEMGDEDDDLCPV 84

Query: 61  DCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPVI 120
           DCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPVI
Sbjct: 85  DCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPVI 144

Query: 121 FLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAITKYSSSPL 180
           FLKHNVMDEYDEQSEVAERLRIK+VPLFHFYKDGVLLEAFPTRDKERILTAITKYSSSPL
Sbjct: 145 FLKHNVMDEYDEQSEVAERLRIKSVPLFHFYKDGVLLEAFPTRDKERILTAITKYSSSPL 204

Query: 181 QI 183
           QI
Sbjct: 205 QI 206

[Close]
BLAST of CsaV3_2G027800 vs. TrEMBL
Match: tr|A0A2N9FZ02|A0A2N9FZ02_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20237 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 2.2e-64
Identity = 124/181 (68.51%), Postives = 146/181 (80.66%), Query Frame = 0 

Query: 1   MEPRIPILIPRWLSSEKEPVRLSITRPEVP----RNQLLYKSKMRVNAGNQGELSDEDDD 60
           ++ R+P ++P +L    + VRL + R ++P     +      ++RV   NQGE+SDEDDD
Sbjct: 23  LDCRVPCIVPSFLHVRSQ-VRLCLIREKIPSLIKTSDTFRAERIRVTELNQGEVSDEDDD 82

Query: 61  LCPVDCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQQ 120
           LCP +CV+EFKTDEEF  IL+KAKE G LVVVDFYRTSCGSCKYIEQGF KLCKGSGDQ+
Sbjct: 83  LCPAECVKEFKTDEEFSGILEKAKEMGSLVVVDFYRTSCGSCKYIEQGFVKLCKGSGDQE 142

Query: 121 APVIFLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAITKYS 178
           A VIFLKHNV+DEYDE+SEVAERLRI+TVPLFHFYKDGVLLEAFPTRDKERI  AI KY+
Sbjct: 143 AAVIFLKHNVIDEYDEESEVAERLRIRTVPLFHFYKDGVLLEAFPTRDKERIFAAICKYT 202

[Close]
BLAST of CsaV3_2G027800 vs. TrEMBL
Match: tr|A0A2P5F8R7|A0A2P5F8R7_9ROSA (Thioredoxin OS=Trema orientalis OX=63057 GN=TorRG33x02_099280 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 7.1e-63
Identity = 116/144 (80.56%), Postives = 131/144 (90.97%), Query Frame = 0 

Query: 39  KMRVNAGNQGELSDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSC 98
           K++   GNQG+LSDEDDDLCPV+CVREFKTD EF KILDKAKE+  LVVVDFYRTSCGSC
Sbjct: 62  KLKAADGNQGDLSDEDDDLCPVECVREFKTDAEFFKILDKAKEDDSLVVVDFYRTSCGSC 121

Query: 99  KYIEQGFAKLCKGSGDQQAPVIFLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLE 158
           KYIEQGFAKLC+GSGD++A V+FLKHNV+DEYDEQSEVAERLRIKTVPLFHFYK+GVLLE
Sbjct: 122 KYIEQGFAKLCRGSGDEEASVVFLKHNVIDEYDEQSEVAERLRIKTVPLFHFYKNGVLLE 181

Query: 159 AFPTRDKERILTAITKYSSSPLQI 183
           +FPTRDKE+I+ AI KY+S   QI
Sbjct: 182 SFPTRDKEKIVAAIRKYTSPASQI 205

[Close]
BLAST of CsaV3_2G027800 vs. TrEMBL
Match: tr|A0A067KQ52|A0A067KQ52_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04261 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 9.3e-63
Identity = 122/184 (66.30%), Postives = 146/184 (79.35%), Query Frame = 0 

Query: 4   RIPILIPRWLSSEKE--------PVRLSITRPEVPRNQLLYKSKMR-VNAGNQGELSDED 63
           RIP ++PR   + K         P+  ++    + ++      +++ V  GN GELSDED
Sbjct: 26  RIPHVVPRMRCNTKSCLVWTKIIPISKTVGLDFLKKSDTFQPGRIKGVADGNPGELSDED 85

Query: 64  DDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGD 123
           +DLCP DCVREFKTDEEF+KI++KAKE G LVVVDFYRTSCGSCKYIEQGFAKLC+G+GD
Sbjct: 86  EDLCPADCVREFKTDEEFLKIIEKAKETGSLVVVDFYRTSCGSCKYIEQGFAKLCRGAGD 145

Query: 124 QQAPVIFLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAITK 179
           ++A VIFLKHNV+DEYDEQSEVAERLRIKTVPLFHFYK+GVLLEAFPTRDKERI  AI K
Sbjct: 146 EEAAVIFLKHNVIDEYDEQSEVAERLRIKTVPLFHFYKNGVLLEAFPTRDKERITAAILK 205

The following BLAST results are available for this feature:
BLAST of CsaV3_2G027800 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004150883.14.9e-100100.00PREDICTED: thioredoxin-like 4, chloroplastic [Cucumis sativus] >XP_011649582.1 P... [more]
XP_008444622.15.1e-9796.70PREDICTED: thioredoxin-like 4, chloroplastic [Cucumis melo][more]
XP_023522900.11.6e-7983.06thioredoxin-like 4, chloroplastic [Cucurbita pepo subsp. pepo][more]
XP_022951253.14.8e-7982.51thioredoxin-like 4, chloroplastic [Cucurbita moschata][more]
XP_023537391.18.2e-7982.51thioredoxin-like 4, chloroplastic [Cucurbita pepo subsp. pepo][more]
BLAST of CsaV3_2G027800 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G07700.32.3e-5968.90Thioredoxin superfamily protein[more]
AT5G42980.14.4e-1032.73thioredoxin 3[more]
AT4G26160.19.8e-1039.76atypical CYS HIS rich thioredoxin 1[more]
AT3G51030.12.9e-0935.19thioredoxin H-type 1[more]
AT4G29670.22.9e-0937.23atypical CYS HIS rich thioredoxin 2[more]
BLAST of CsaV3_2G027800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9C5C5|TRL4_ARATH4.1e-5868.90Thioredoxin-like 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g07700 P... [more]
sp|Q6YTI3|TRL4_ORYSJ3.2e-5075.00Thioredoxin-like 4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os... [more]
sp|P10639|THIO_MOUSE4.2e-1035.96Thioredoxin OS=Mus musculus OX=10090 GN=Txn PE=1 SV=3[more]
sp|P11232|THIO_RAT1.6e-0935.09Thioredoxin OS=Rattus norvegicus OX=10116 GN=Txn PE=1 SV=2[more]
sp|Q0D840|TRXH1_ORYSJ4.6e-0933.96Thioredoxin H1 OS=Oryza sativa subsp. japonica OX=39947 GN=TRXH PE=1 SV=1[more]
BLAST of CsaV3_2G027800 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LP39|A0A0A0LP39_CUCSA3.3e-100100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G357300 PE=4 SV=1[more]
tr|A0A1S3BBI1|A0A1S3BBI1_CUCME3.4e-9796.70thioredoxin-like 4, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487891 PE=4 S... [more]
tr|A0A2N9FZ02|A0A2N9FZ02_FAGSY2.2e-6468.51Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20237 PE=4 SV=1[more]
tr|A0A2P5F8R7|A0A2P5F8R7_9ROSA7.1e-6380.56Thioredoxin OS=Trema orientalis OX=63057 GN=TorRG33x02_099280 PE=4 SV=1[more]
tr|A0A067KQ52|A0A067KQ52_JATCU9.3e-6366.30Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04261 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006662glycerol ether metabolic process
GO:0045454cell redox homeostasis
Vocabulary: Molecular Function
TermDefinition
GO:0015035protein disulfide oxidoreductase activity
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR005746Thioredoxin
IPR013766Thioredoxin_domain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0006662 glycerol ether metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0034599 cellular response to oxidative stress
cellular_component GO:0005575 cellular_component
cellular_component GO:0005623 cell
cellular_component GO:0005737 cytoplasm
molecular_function GO:0015035 protein disulfide oxidoreductase activity
molecular_function GO:0003674 molecular_function
molecular_function GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
molecular_function GO:0047134 protein-disulfide reductase activity
molecular_function GO:0004791 thioredoxin-disulfide reductase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G027800.1CsaV3_2G027800.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013766Thioredoxin domainPFAMPF00085Thioredoxincoord: 68..173
e-value: 5.6E-12
score: 45.4
IPR013766Thioredoxin domainPROSITEPS51352THIOREDOXIN_2coord: 38..177
score: 9.768
NoneNo IPR availableGENE3DG3DSA:3.40.30.10coord: 46..178
e-value: 5.4E-19
score: 70.1
NoneNo IPR availablePANTHERPTHR10438:SF229THIOREDOXIN-LIKE 4, CHLOROPLASTICcoord: 30..175
NoneNo IPR availableCDDcd02947TRX_familycoord: 76..160
e-value: 1.96304E-18
score: 75.6724
IPR005746ThioredoxinPANTHERPTHR10438THIOREDOXINcoord: 30..175
IPR036249Thioredoxin-like superfamilySUPERFAMILYSSF52833Thioredoxin-likecoord: 44..175

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G027800CSPI02G19100Wild cucumber (PI 183967)cpicucB081
CsaV3_2G027800Cucsa.232940Cucumber (Gy14) v1cgycucB347
CsaV3_2G027800CmaCh12G005490Cucurbita maxima (Rimu)cmacucB0203
CsaV3_2G027800CmoCh12G004940Cucurbita moschata (Rifu)cmocucB0186
CsaV3_2G027800Cp4.1LG07g05320Cucurbita pepo (Zucchini)cpecucB1013
CsaV3_2G027800CsGy2G018990Cucumber (Gy14) v2cgybcucB065
CsaV3_2G027800Carg26150Silver-seed gourdcarcucB0093
CsaV3_2G027800Cla022572Watermelon (97103) v1cucwmB124
CsaV3_2G027800MELO3C010860Melon (DHL92) v3.5.1cucmeB124
CsaV3_2G027800ClCG08G015940Watermelon (Charleston Gray)cucwcgB176
CsaV3_2G027800Lsi08G014710Bottle gourd (USVL1VR-Ls)cuclsiB155
CsaV3_2G027800MELO3C010860.2Melon (DHL92) v3.6.1cucmedB118
CsaV3_2G027800Cla97C08G159500Watermelon (97103) v2cucwmbB164
CsaV3_2G027800Bhi04G000320Wax gourdcucwgoB169
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G027800Silver-seed gourdcarcucB0209
CsaV3_2G027800Silver-seed gourdcarcucB0809
CsaV3_2G027800Cucumber (Gy14) v2cgybcucB167
CsaV3_2G027800Cucumber (Gy14) v1cgycucB535
CsaV3_2G027800Cucurbita maxima (Rimu)cmacucB0015
CsaV3_2G027800Cucurbita maxima (Rimu)cmacucB0524
CsaV3_2G027800Cucurbita maxima (Rimu)cmacucB0926
CsaV3_2G027800Cucurbita moschata (Rifu)cmocucB0004
CsaV3_2G027800Cucurbita moschata (Rifu)cmocucB0510
CsaV3_2G027800Cucurbita moschata (Rifu)cmocucB0918
CsaV3_2G027800Cucurbita pepo (Zucchini)cpecucB0106
CsaV3_2G027800Cucurbita pepo (Zucchini)cpecucB0675
CsaV3_2G027800Cucurbita pepo (Zucchini)cpecucB0957
CsaV3_2G027800Wild cucumber (PI 183967)cpicucB206
CsaV3_2G027800Bottle gourd (USVL1VR-Ls)cuclsiB129
CsaV3_2G027800Melon (DHL92) v3.5.1cucmeB150
CsaV3_2G027800Melon (DHL92) v3.6.1cucmedB143
CsaV3_2G027800Watermelon (Charleston Gray)cucwcgB150
CsaV3_2G027800Watermelon (97103) v1cucwmB138
CsaV3_2G027800Watermelon (97103) v2cucwmbB137
CsaV3_2G027800Wax gourdcucwgoB204
CsaV3_2G027800Cucumber (Chinese Long) v3cuccucB081
CsaV3_2G027800Cucumber (Chinese Long) v3cuccucB100