Carg26150 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26150
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Thioredoxin
Location	Cucurbita_argyrosperma_scaffold_444 : 26412 .. 28151 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTGATTTGTAGAAGAACCCATGAATCAATCCATGTCCACAAAACCTCCCACGTGAAAGGTAAATCAATGGCAACCAAAGGAAGAAGATAATGGTGGAGTCGTGTCATTTTCTCGTTCGCAGCTGCTCCTCTGCTCTTCTTCCCGCTCAGAGGTAAGCCACTGGTCCAACATTTGTTGCTTTCCACCATCAATTTTGTACCTCCTAACAGTCATTTTTCATCTTTCTGAATCGTTCATCGAAATTGCCTCTTTGATTACCGTTAAATAACACAACAAGATTCAAATACTGAATTGAATGCTACATCTGAATCTGTTTTCATTAGCTTCCCGATCGAAGTTCATTCACTAAACAAGACCCAAATCCTATATGTTGCAATGCAAAGACAGAACCAGAATGTACTGAAATGTAAAGCATTACTCAGTGTTGGAAAGCTCGAATCGAGAATAATACCCATTTCAATTCCCTTCTGGTTGTCTGAAAACCCGCATGTTCGATTGTCGATTACAAGGCCCGAAGCTCCACCATATCTGAGTATCAGACATGAATTGATGTTCAAGAGTAAACCCAGAGTTGCTGCTGGAAATCAGGGGGGGTTGTCCGACGAAGACGATGATCTTTGCCCTGTAGAATGTGTGAGGGAGTTCAAGACGGATGAAGAGTTCATCAGAATTCTAGAGAGGGCGAAGGAAAGTGGAGCGCTGGTGGTTGTGGACTTTTATCGAACATCTTGTGGGAGTTGCAAGTACATAGAACAAGGGTTTGCGAAATTGTGCAGGGGATCTGGAGATCAAGAGGCTCCGGTTATCTTCTTGAAGCACAATGTGAGTAATCCATATCAGAGAAGTTGTTTTGTTGGAGAAATGAATTTGATTCTGGAACTGAATGCTTGTGATCTTAGGTCGTTGATGAATATGATGAACAATCTGAGGTTGCTGAACGACTGAGGATCAAGGTAAGTTTCTTTACTCCTCCTTAATTAAATTATCTGAATGAACTCGTTGCTTCTGAAAATTTAGAGACTTAAACCATTTCTTAATCCCTTTTTCTAATCTTCAACAAATATCAAGAATGATTACCCATCCTCATCGATGAAAAGGGTATATGATCTGATCATCCTGTAGGTAACGAGGAGTTAGTGGTTTATTTTGTTGACTAATGTTGAAATTTGATGGGTGCAGACAGTGCCACTGTTCCACTTTTATAAAGATGGTGTGTTATTAGAAGCATTTCCCACTAGAGATAAAGAGAGGATTCTTGCAGCCATAACCAAATATTCATCCACTGCTCTTCAATTATGATTTTATCTTTGTTCTTCTACACAAAACCTTATAATATTACCAAACAAACCCAAAATTCTGATACCAAACTCCATCCGTCCCTTCGTATGATATGAGTTCTTCGAACTATGTTCTTGATGAATATATTTGTTGTGAATTGTCACGAAGATTTAGTCCATGAATCCTGGATTCATGGATGCCTTTGGTACATTTATCATTTCGATTCATAAATCTATTGGATTCATTTAGTTCATTTCCCATATTGGTACATGAACCATCTTAATTCGTGTATGAGCATTAGTATTGCTTTGATTCAGGTATGAGAATTAATATTGTTAGGTCTGTATAAAGGCTTGTCTAACATTGTTTTGAAACGTGGAATTATTGTCATTTTGTATTTGTTTAGAGACAATTGAGAGGAACTTTGTAAGTGAGACTTTATAGTTTGAGAGTGTTTGAGA

mRNA sequence

TCTGATTTGTAGAAGAACCCATGAATCAATCCATGTCCACAAAACCTCCCACGTGAAAGGTAAATCAATGGCAACCAAAGGAAGAAGATAATGGTGGAGTCGTGTCATTTTCTCGTTCGCAGCTGCTCCTCTGCTCTTCTTCCCGCTCAGAGCTTCCCGATCGAAGTTCATTCACTAAACAAGACCCAAATCCTATATGTTGCAATGCAAAGACAGAACCAGAATGTACTGAAATGTAAAGCATTACTCAGTGTTGGAAAGCTCGAATCGAGAATAATACCCATTTCAATTCCCTTCTGGTTGTCTGAAAACCCGCATGTTCGATTGTCGATTACAAGGCCCGAAGCTCCACCATATCTGAGTATCAGACATGAATTGATGTTCAAGAGTAAACCCAGAGTTGCTGCTGGAAATCAGGGGGGGTTGTCCGACGAAGACGATGATCTTTGCCCTGTAGAATGTGTGAGGGAGTTCAAGACGGATGAAGAGTTCATCAGAATTCTAGAGAGGGCGAAGGAAAGTGGAGCGCTGGTGGTTGTGGACTTTTATCGAACATCTTGTGGGAGTTGCAAGTACATAGAACAAGGGTTTGCGAAATTGTGCAGGGGATCTGGAGATCAAGAGGCTCCGGTTATCTTCTTGAAGCACAATGTCGTTGATGAATATGATGAACAATCTGAGGTTGCTGAACGACTGAGGATCAAGACAGTGCCACTGTTCCACTTTTATAAAGATGGTGTGTTATTAGAAGCATTTCCCACTAGAGATAAAGAGAGGATTCTTGCAGCCATAACCAAATATTCATCCACTGCTCTTCAATTATGATTTTATCTTTGTTCTTCTACACAAAACCTTATAATATTACCAAACAAACCCAAAATTCTGATACCAAACTCCATCCGTCCCTTCGTATGATATGAGTTCTTCGAACTATGTTCTTGATGAATATATTTGTTGTGAATTGTCACGAAGATTTAGTCCATGAATCCTGGATTCATGGATGCCTTTGGTACATTTATCATTTCGATTCATAAATCTATTGGATTCATTTAGTTCATTTCCCATATTGGTACATGAACCATCTTAATTCGTGTATGAGCATTAGTATTGCTTTGATTCAGGTATGAGAATTAATATTGTTAGGTCTGTATAAAGGCTTGTCTAACATTGTTTTGAAACGTGGAATTATTGTCATTTTGTATTTGTTTAGAGACAATTGAGAGGAACTTTGTAAGTGAGACTTTATAGTTTGAGAGTGTTTGAGA

Coding sequence (CDS)

ATGGTGGAGTCGTGTCATTTTCTCGTTCGCAGCTGCTCCTCTGCTCTTCTTCCCGCTCAGAGCTTCCCGATCGAAGTTCATTCACTAAACAAGACCCAAATCCTATATGTTGCAATGCAAAGACAGAACCAGAATGTACTGAAATGTAAAGCATTACTCAGTGTTGGAAAGCTCGAATCGAGAATAATACCCATTTCAATTCCCTTCTGGTTGTCTGAAAACCCGCATGTTCGATTGTCGATTACAAGGCCCGAAGCTCCACCATATCTGAGTATCAGACATGAATTGATGTTCAAGAGTAAACCCAGAGTTGCTGCTGGAAATCAGGGGGGGTTGTCCGACGAAGACGATGATCTTTGCCCTGTAGAATGTGTGAGGGAGTTCAAGACGGATGAAGAGTTCATCAGAATTCTAGAGAGGGCGAAGGAAAGTGGAGCGCTGGTGGTTGTGGACTTTTATCGAACATCTTGTGGGAGTTGCAAGTACATAGAACAAGGGTTTGCGAAATTGTGCAGGGGATCTGGAGATCAAGAGGCTCCGGTTATCTTCTTGAAGCACAATGTCGTTGATGAATATGATGAACAATCTGAGGTTGCTGAACGACTGAGGATCAAGACAGTGCCACTGTTCCACTTTTATAAAGATGGTGTGTTATTAGAAGCATTTCCCACTAGAGATAAAGAGAGGATTCTTGCAGCCATAACCAAATATTCATCCACTGCTCTTCAATTATGA

Protein sequence

MVESCHFLVRSCSSALLPAQSFPIEVHSLNKTQILYVAMQRQNQNVLKCKALLSVGKLESRIIPISIPFWLSENPHVRLSITRPEAPPYLSIRHELMFKSKPRVAAGNQGGLSDEDDDLCPVECVREFKTDEEFIRILERAKESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILAAITKYSSTALQL

Homology

[Close]

BLAST of Carg26150 vs. NCBI nr
Match: XP_022951253.1 (thioredoxin-like 4, chloroplastic [Cucurbita moschata])

HSP 1 Score: 490.3 bits (1261), Expect = 3.7e-135
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0


Query: 1   MVESCHFLVRSCSSALLPAQSFPIEVHSLNKTQILYVAMQRQNQNVLKCKALLSVGKLES 60
           MVESCHFLVRSCSSALLPAQSFPIEVHSLNKTQILYVAMQRQNQNVLKCKALLSVGKLES
Sbjct: 1   MVESCHFLVRSCSSALLPAQSFPIEVHSLNKTQILYVAMQRQNQNVLKCKALLSVGKLES 60

Query: 61  RIIPISIPFWLSENPHVRLSITRPEAPPYLSIRHELMFKSKPRVAAGNQGGLSDEDDDLC 120
           RIIPISIPFWLSENPHVRLSITRPEAPPYLSIRHELMFKSKPRVAAGNQGGLSDEDDDLC
Sbjct: 61  RIIPISIPFWLSENPHVRLSITRPEAPPYLSIRHELMFKSKPRVAAGNQGGLSDEDDDLC 120

Query: 121 PVECVREFKTDEEFIRILERAKESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAP 180
           PVECVREFKTDEEFIRILERAKESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAP
Sbjct: 121 PVECVREFKTDEEFIRILERAKESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAP 180

Query: 181 VIFLKHNVVDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILAAITKYSST 240
           VIFLKHNVVDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILAAITKYSST
Sbjct: 181 VIFLKHNVVDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILAAITKYSST 240

Query: 241 ALQL 245
           ALQL
Sbjct: 241 ALQL 244

[Close]

BLAST of Carg26150 vs. NCBI nr
Match: XP_023537391.1 (thioredoxin-like 4, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 486.9 bits (1252), Expect = 4.1e-134
Identity = 242/244 (99.18%), Postives = 243/244 (99.59%), Query Frame = 0


Query: 1   MVESCHFLVRSCSSALLPAQSFPIEVHSLNKTQILYVAMQRQNQNVLKCKALLSVGKLES 60
           MVESCHFLVRSCSSALLPAQSFPIEVHSLNKTQILYVAMQRQNQNVLKCKALLSVGKLES
Sbjct: 1   MVESCHFLVRSCSSALLPAQSFPIEVHSLNKTQILYVAMQRQNQNVLKCKALLSVGKLES 60

Query: 61  RIIPISIPFWLSENPHVRLSITRPEAPPYLSIRHELMFKSKPRVAAGNQGGLSDEDDDLC 120
           RIIPISIPFWLSENPHVRLSITRPEAPPYLSIRHELMFKSKPRVAAGNQ GLSDEDDDLC
Sbjct: 61  RIIPISIPFWLSENPHVRLSITRPEAPPYLSIRHELMFKSKPRVAAGNQAGLSDEDDDLC 120

Query: 121 PVECVREFKTDEEFIRILERAKESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAP 180
           PVECVREFKTDEEFIRIL+RAKESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAP
Sbjct: 121 PVECVREFKTDEEFIRILDRAKESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAP 180

Query: 181 VIFLKHNVVDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILAAITKYSST 240
           VIFLKHNVVDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILAAITKYSST
Sbjct: 181 VIFLKHNVVDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILAAITKYSST 240

Query: 241 ALQL 245
           ALQL
Sbjct: 241 ALQL 244

[Close]

BLAST of Carg26150 vs. NCBI nr
Match: XP_023522900.1 (thioredoxin-like 4, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 415.6 bits (1067), Expect = 1.2e-112
Identity = 205/206 (99.51%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 39  MQRQNQNVLKCKALLSVGKLESRIIPISIPFWLSENPHVRLSITRPEAPPYLSIRHELMF 98
           MQRQNQNVLKCKALLSVGKLESRIIPISIPFWLSENPHVRLSITRPEAPPYLSIRHELMF
Sbjct: 1   MQRQNQNVLKCKALLSVGKLESRIIPISIPFWLSENPHVRLSITRPEAPPYLSIRHELMF 60

Query: 99  KSKPRVAAGNQGGLSDEDDDLCPVECVREFKTDEEFIRILERAKESGALVVVDFYRTSCG 158
           KSKPRVAAGNQGGLSDEDDDLCPVECVREFKTDEEFIRIL+RAKESGALVVVDFYRTSCG
Sbjct: 61  KSKPRVAAGNQGGLSDEDDDLCPVECVREFKTDEEFIRILDRAKESGALVVVDFYRTSCG 120

Query: 159 SCKYIEQGFAKLCRGSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKTVPLFHFYKDGVL 218
           SCKYIEQGFAKLCRGSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKTVPLFHFYKDGVL
Sbjct: 121 SCKYIEQGFAKLCRGSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKTVPLFHFYKDGVL 180

Query: 219 LEAFPTRDKERILAAITKYSSTALQL 245
           LEAFPTRDKERILAAITKYSSTALQL
Sbjct: 181 LEAFPTRDKERILAAITKYSSTALQL 206

[Close]

BLAST of Carg26150 vs. NCBI nr
Match: XP_023001835.1 (thioredoxin-like 4, chloroplastic [Cucurbita maxima])

HSP 1 Score: 405.6 bits (1041), Expect = 1.2e-109
Identity = 201/206 (97.57%), Postives = 202/206 (98.06%), Query Frame = 0


Query: 39  MQRQNQNVLKCKALLSVGKLESRIIPISIPFWLSENPHVRLSITRPEAPPYLSIRHELMF 98
           MQRQNQNVLKCKAL S GK ESRIIPISIPFWLSENPHVRLSI RPEAPPYLSIRHELMF
Sbjct: 1   MQRQNQNVLKCKALPSFGKHESRIIPISIPFWLSENPHVRLSIIRPEAPPYLSIRHELMF 60

Query: 99  KSKPRVAAGNQGGLSDEDDDLCPVECVREFKTDEEFIRILERAKESGALVVVDFYRTSCG 158
           KSKPRVAAGNQGGLSDEDDDLCPVECVREFKTDEEFIRILERAK+SGALVVVDFYRTSCG
Sbjct: 61  KSKPRVAAGNQGGLSDEDDDLCPVECVREFKTDEEFIRILERAKKSGALVVVDFYRTSCG 120

Query: 159 SCKYIEQGFAKLCRGSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKTVPLFHFYKDGVL 218
           SCKYIEQGFAKLCRGSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKTVPLFHFYKDGVL
Sbjct: 121 SCKYIEQGFAKLCRGSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKTVPLFHFYKDGVL 180

Query: 219 LEAFPTRDKERILAAITKYSSTALQL 245
           LEAFPTRDKERILAAITKYSSTALQL
Sbjct: 181 LEAFPTRDKERILAAITKYSSTALQL 206

[Close]

BLAST of Carg26150 vs. NCBI nr
Match: XP_008444622.1 (PREDICTED: thioredoxin-like 4, chloroplastic [Cucumis melo])

HSP 1 Score: 328.6 bits (841), Expect = 1.9e-86
Identity = 168/212 (79.25%), Postives = 185/212 (87.26%), Query Frame = 0


Query: 39  MQRQNQNVLKCKALLSVG-----KLESRIIPISIPFWL-SENPHVRLSITRPEAPPYLSI 98
           MQRQNQNVL+CK L+S G     KLESR IPI IP WL SE   VRLSITRPE P     
Sbjct: 1   MQRQNQNVLQCKTLISFGLHPNEKLESR-IPILIPRWLSSEKEPVRLSITRPEVP----- 60

Query: 99  RHELMFKSKPRVAAGNQGGLSDEDDDLCPVECVREFKTDEEFIRILERAKESGALVVVDF 158
           RH+L++KSK RV AGNQG + DEDDDLCPV+CVREFKTDEEFI+IL++AKE+G LVVVDF
Sbjct: 61  RHQLLYKSKMRVNAGNQGEMGDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDF 120

Query: 159 YRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKTVPLFHF 218
           YRTSCGSCKYIEQGFAKLC+GSGDQ+APVIFLKHNV+DEYDEQSEVAERLRIK+VPLFHF
Sbjct: 121 YRTSCGSCKYIEQGFAKLCKGSGDQQAPVIFLKHNVMDEYDEQSEVAERLRIKSVPLFHF 180

Query: 219 YKDGVLLEAFPTRDKERILAAITKYSSTALQL 245
           YKDGVLLEAFPTRDKERIL AITKYSS+ LQ+
Sbjct: 181 YKDGVLLEAFPTRDKERILTAITKYSSSPLQI 206

[Close]

BLAST of Carg26150 vs. TAIR10
Match: AT1G07700.3 (Thioredoxin superfamily protein)

HSP 1 Score: 233.4 bits (594), Expect = 1.5e-61
Identity = 115/171 (67.25%), Postives = 137/171 (80.12%), Query Frame = 0


Query: 70  WLSENPHVRLSITRPEAPPYLSIRHELMFKSKPRVAAGNQGGLSDEDDDLCPVECVREFK 129
           W+  N  VRLS  R E+   +++   L       ++  N   LSDE+DDLCPVECV EFK
Sbjct: 45  WVWHNNGVRLSFPRAESSINITMGCTLQRGIAKSLSQENLVELSDENDDLCPVECVTEFK 104

Query: 130 TDEEFIRILERAKESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFLKHNVV 189
           TD+E + +LE++KE+ +LVVVDFYRT+CGSCKYIEQGF+KLC+ SGDQEAPVIFLKHNVV
Sbjct: 105 TDDELLSVLEKSKETNSLVVVDFYRTACGSCKYIEQGFSKLCKQSGDQEAPVIFLKHNVV 164

Query: 190 DEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILAAITKYSST 241
           DEYDEQSEVAERLRIK VPLFHFYK+GVLLE+F TRDKERI AAI KY+S+
Sbjct: 165 DEYDEQSEVAERLRIKAVPLFHFYKNGVLLESFATRDKERIDAAILKYTSS 215

[Close]

BLAST of Carg26150 vs. TAIR10
Match: AT5G42980.1 (thioredoxin 3)

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-10
Identity = 37/110 (33.64%), Postives = 59/110 (53.64%), Query Frame = 0


Query: 130 TDEEFIRILERAKESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFLKHNVV 189
           T E++   L+ A ES  L+V+DF  T C  C++I   FA L +    +   V+F K +V 
Sbjct: 12  TVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAK----KHLDVVFFKVDV- 71

Query: 190 DEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILAAITKYSS 240
              DE + VAE  +++ +P F F K+G + E      KE I+A + K+ +
Sbjct: 72  ---DELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKHKT 113

[Close]

BLAST of Carg26150 vs. TAIR10
Match: AT4G26160.1 (atypical CYS HIS rich thioredoxin 1)

HSP 1 Score: 59.3 bits (142), Expect = 3.8e-09
Identity = 32/83 (38.55%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 132 EEFIRILERAKESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFLKHNVVDE 191
           E+F+  L+ A +   LV+VDFY T CGSC+ +   F KLC+ +  +   ++FLK N    
Sbjct: 102 EQFLNALKDAGD--RLVIVDFYGTWCGSCRAM---FPKLCK-TAKEHPNILFLKVN---- 161

Query: 192 YDEQSEVAERLRIKTVPLFHFYK 215
           +DE   + + L +K +P FHFY+
Sbjct: 162 FDENKSLCKSLNVKVLPYFHFYR 174

[Close]

BLAST of Carg26150 vs. TAIR10
Match: AT3G51030.1 (thioredoxin H-type 1)

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-08
Identity = 39/108 (36.11%), Postives = 57/108 (52.78%), Query Frame = 0


Query: 130 TDEEFIRILERAKESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFLKHNVV 189
           T E +   L++A ES  LVVVDF  + CG C++I   FA L +    +   V+FLK   V
Sbjct: 13  TVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAK----KLPNVLFLK---V 72

Query: 190 DEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILAAITKY 238
           D  DE   VA    I+ +P F F K+G +L+      K+ + + I K+
Sbjct: 73  DT-DELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKH 112

[Close]

BLAST of Carg26150 vs. TAIR10
Match: AT4G29670.2 (atypical CYS HIS rich thioredoxin 2)

HSP 1 Score: 57.0 bits (136), Expect = 1.9e-08
Identity = 34/94 (36.17%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 127 EFKTDEEFIRILERAKESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFLKH 186
           +  + EEF+  L  A E   LV+V+FY T C SC+ +   F KLC+ +  +   ++FLK 
Sbjct: 107 DIHSTEEFLSALSGAGE--RLVIVEFYGTWCASCRAL---FPKLCK-TAVEHPDIVFLKV 166

Query: 187 NVVDEYDEQSEVAERLRIKTVPLFHFYK--DGVL 219
           N    +DE   + + L ++ +P FHFY+  DG L
Sbjct: 167 N----FDENKPMCKSLNVRVLPFFHFYRGADGQL 190

[Close]

BLAST of Carg26150 vs. Swiss-Prot
Match: sp|Q9C5C5|TRL4_ARATH (Thioredoxin-like 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g07700 PE=2 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 2.7e-60
Identity = 115/171 (67.25%), Postives = 137/171 (80.12%), Query Frame = 0


Query: 70  WLSENPHVRLSITRPEAPPYLSIRHELMFKSKPRVAAGNQGGLSDEDDDLCPVECVREFK 129
           W+  N  VRLS  R E+   +++   L       ++  N   LSDE+DDLCPVECV EFK
Sbjct: 32  WVWHNNGVRLSFPRAESSINITMGCTLQRGIAKSLSQENLVELSDENDDLCPVECVTEFK 91

Query: 130 TDEEFIRILERAKESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFLKHNVV 189
           TD+E + +LE++KE+ +LVVVDFYRT+CGSCKYIEQGF+KLC+ SGDQEAPVIFLKHNVV
Sbjct: 92  TDDELLSVLEKSKETNSLVVVDFYRTACGSCKYIEQGFSKLCKQSGDQEAPVIFLKHNVV 151

Query: 190 DEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILAAITKYSST 241
           DEYDEQSEVAERLRIK VPLFHFYK+GVLLE+F TRDKERI AAI KY+S+
Sbjct: 152 DEYDEQSEVAERLRIKAVPLFHFYKNGVLLESFATRDKERIDAAILKYTSS 202

[Close]

BLAST of Carg26150 vs. Swiss-Prot
Match: sp|Q6YTI3|TRL4_ORYSJ (Thioredoxin-like 4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0567100 PE=2 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 5.9e-52
Identity = 95/120 (79.17%), Postives = 108/120 (90.00%), Query Frame = 0


Query: 120 CPVECVREFKTDEEFIRILERAKESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEA 179
           CPVECV EFKT+EE  R+LERAK +GALVVVDF+R SCGSCKYIEQGF KLC+GSGD  +
Sbjct: 80  CPVECVTEFKTEEELARVLERAKATGALVVVDFFRPSCGSCKYIEQGFMKLCKGSGDHGS 139

Query: 180 PVIFLKHNVVDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILAAITKYSS 239
            V+FLKHNV+DEYDEQSEVA+RLRIK VPLFHFYK+GVLLEAF TRDKERI+AAI KY++
Sbjct: 140 SVVFLKHNVIDEYDEQSEVADRLRIKVVPLFHFYKNGVLLEAFATRDKERIIAAIQKYTA 199

[Close]

BLAST of Carg26150 vs. Swiss-Prot
Match: sp|P10639|THIO_MOUSE (Thioredoxin OS=Mus musculus OX=10090 GN=Txn PE=1 SV=3)

HSP 1 Score: 66.2 bits (160), Expect = 5.6e-10
Identity = 42/114 (36.84%), Postives = 63/114 (55.26%), Query Frame = 0


Query: 125 VREFKTDEEFIRILERAKESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFL 184
           V+  ++ E F   L  A +   LVVVDF  T CG CK I+  F  LC    D+ + V+FL
Sbjct: 2   VKLIESKEAFQEALAAAGDK--LVVVDFSATWCGPCKMIKPFFHSLC----DKYSNVVFL 61

Query: 185 KHNVVDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILAAITKYS 239
           + +V    D+  +VA    +K +P F FYK G  +  F   +KE++ A+IT+Y+
Sbjct: 62  EVDV----DDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASITEYA 105

[Close]

BLAST of Carg26150 vs. Swiss-Prot
Match: sp|P11232|THIO_RAT (Thioredoxin OS=Rattus norvegicus OX=10116 GN=Txn PE=1 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 2.1e-09
Identity = 41/114 (35.96%), Postives = 62/114 (54.39%), Query Frame = 0


Query: 125 VREFKTDEEFIRILERAKESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFL 184
           V+  ++ E F   L  A +   LVVVDF  T CG CK I+  F  LC    D+ + V+FL
Sbjct: 2   VKLIESKEAFQEALAAAGDK--LVVVDFSATWCGPCKMIKPFFHSLC----DKYSNVVFL 61

Query: 185 KHNVVDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILAAITKYS 239
           + +V    D+  +VA    +K +P F FYK G  +  F   +KE++ A IT+++
Sbjct: 62  EVDV----DDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEATITEFA 105

[Close]

BLAST of Carg26150 vs. Swiss-Prot
Match: sp|Q42403|TRXH3_ARATH (Thioredoxin H3 OS=Arabidopsis thaliana OX=3702 GN=TRX3 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.6e-09
Identity = 37/110 (33.64%), Postives = 59/110 (53.64%), Query Frame = 0


Query: 130 TDEEFIRILERAKESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFLKHNVV 189
           T E++   L+ A ES  L+V+DF  T C  C++I   FA L +    +   V+F K +V 
Sbjct: 12  TVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAK----KHLDVVFFKVDV- 71

Query: 190 DEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILAAITKYSS 240
              DE + VAE  +++ +P F F K+G + E      KE I+A + K+ +
Sbjct: 72  ---DELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKHKT 113

[Close]

BLAST of Carg26150 vs. TrEMBL
Match: tr|A0A1S3BBI1|A0A1S3BBI1_CUCME (thioredoxin-like 4, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487891 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.2e-86
Identity = 168/212 (79.25%), Postives = 185/212 (87.26%), Query Frame = 0


Query: 39  MQRQNQNVLKCKALLSVG-----KLESRIIPISIPFWL-SENPHVRLSITRPEAPPYLSI 98
           MQRQNQNVL+CK L+S G     KLESR IPI IP WL SE   VRLSITRPE P     
Sbjct: 1   MQRQNQNVLQCKTLISFGLHPNEKLESR-IPILIPRWLSSEKEPVRLSITRPEVP----- 60

Query: 99  RHELMFKSKPRVAAGNQGGLSDEDDDLCPVECVREFKTDEEFIRILERAKESGALVVVDF 158
           RH+L++KSK RV AGNQG + DEDDDLCPV+CVREFKTDEEFI+IL++AKE+G LVVVDF
Sbjct: 61  RHQLLYKSKMRVNAGNQGEMGDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDF 120

Query: 159 YRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKTVPLFHF 218
           YRTSCGSCKYIEQGFAKLC+GSGDQ+APVIFLKHNV+DEYDEQSEVAERLRIK+VPLFHF
Sbjct: 121 YRTSCGSCKYIEQGFAKLCKGSGDQQAPVIFLKHNVMDEYDEQSEVAERLRIKSVPLFHF 180

Query: 219 YKDGVLLEAFPTRDKERILAAITKYSSTALQL 245
           YKDGVLLEAFPTRDKERIL AITKYSS+ LQ+
Sbjct: 181 YKDGVLLEAFPTRDKERILTAITKYSSSPLQI 206

[Close]

BLAST of Carg26150 vs. TrEMBL
Match: tr|A0A0A0LP39|A0A0A0LP39_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G357300 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 3.6e-86
Identity = 168/212 (79.25%), Postives = 185/212 (87.26%), Query Frame = 0


Query: 39  MQRQNQNVLKCKALLSVG-----KLESRIIPISIPFWL-SENPHVRLSITRPEAPPYLSI 98
           MQRQNQNVL+CK L+S G     K+E R IPI IP WL SE   VRLSITRPE P     
Sbjct: 1   MQRQNQNVLQCKTLISFGLNPNEKMEPR-IPILIPRWLSSEKEPVRLSITRPEVP----- 60

Query: 99  RHELMFKSKPRVAAGNQGGLSDEDDDLCPVECVREFKTDEEFIRILERAKESGALVVVDF 158
           R++L++KSK RV AGNQG LSDEDDDLCPV+CVREFKTDEEFI+IL++AKE+G LVVVDF
Sbjct: 61  RNQLLYKSKMRVNAGNQGELSDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDF 120

Query: 159 YRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKTVPLFHF 218
           YRTSCGSCKYIEQGFAKLC+GSGDQ+APVIFLKHNV+DEYDEQSEVAERLRIKTVPLFHF
Sbjct: 121 YRTSCGSCKYIEQGFAKLCKGSGDQQAPVIFLKHNVMDEYDEQSEVAERLRIKTVPLFHF 180

Query: 219 YKDGVLLEAFPTRDKERILAAITKYSSTALQL 245
           YKDGVLLEAFPTRDKERIL AITKYSS+ LQ+
Sbjct: 181 YKDGVLLEAFPTRDKERILTAITKYSSSPLQI 206

[Close]

BLAST of Carg26150 vs. TrEMBL
Match: tr|A0A2N9FZ02|A0A2N9FZ02_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20237 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.8e-66
Identity = 135/205 (65.85%), Postives = 155/205 (75.61%), Query Frame = 0


Query: 42  QNQNVLKCKALL-----SVGKLESRIIPISIPFWLSENPHVRLSITRPEAPPYLSIRHEL 101
           Q QN+  CKA       S G+L+ R +P  +P +L     VRL + R + P  +    + 
Sbjct: 2   QRQNIHYCKAYFGFGRNSNGQLDCR-VPCIVPSFLHVRSQVRLCLIREKIPSLIK-TSDT 61

Query: 102 MFKSKPRVAAGNQGGLSDEDDDLCPVECVREFKTDEEFIRILERAKESGALVVVDFYRTS 161
               + RV   NQG +SDEDDDLCP ECV+EFKTDEEF  ILE+AKE G+LVVVDFYRTS
Sbjct: 62  FRAERIRVTELNQGEVSDEDDDLCPAECVKEFKTDEEFSGILEKAKEMGSLVVVDFYRTS 121

Query: 162 CGSCKYIEQGFAKLCRGSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKTVPLFHFYKDG 221
           CGSCKYIEQGF KLC+GSGDQEA VIFLKHNV+DEYDE+SEVAERLRI+TVPLFHFYKDG
Sbjct: 122 CGSCKYIEQGFVKLCKGSGDQEAAVIFLKHNVIDEYDEESEVAERLRIRTVPLFHFYKDG 181

Query: 222 VLLEAFPTRDKERILAAITKYSSTA 242
           VLLEAFPTRDKERI AAI KY+S A
Sbjct: 182 VLLEAFPTRDKERIFAAICKYTSPA 204

[Close]

BLAST of Carg26150 vs. TrEMBL
Match: tr|A0A2P5F8R7|A0A2P5F8R7_9ROSA (Thioredoxin OS=Trema orientalis OX=63057 GN=TorRG33x02_099280 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.0e-65
Identity = 135/207 (65.22%), Postives = 155/207 (74.88%), Query Frame = 0


Query: 42  QNQNVLKCKALLSVGKLESRIIPIS----IPFWLSENPHVRLSITRPEAPPYLSIRHELM 101
           Q QN   CKAL S      R +  S        L +  H RL + R +    L+  H + 
Sbjct: 2   QRQNAFHCKALFSFRTNTRRQLKSSAASIFSSSLPDRSHARLCLMRGKIS--LTPSHTIR 61

Query: 102 FKSKPRVAAGNQGGLSDEDDDLCPVECVREFKTDEEFIRILERAKESGALVVVDFYRTSC 161
              K + A GNQG LSDEDDDLCPVECVREFKTD EF +IL++AKE  +LVVVDFYRTSC
Sbjct: 62  -PVKLKAADGNQGDLSDEDDDLCPVECVREFKTDAEFFKILDKAKEDDSLVVVDFYRTSC 121

Query: 162 GSCKYIEQGFAKLCRGSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKTVPLFHFYKDGV 221
           GSCKYIEQGFAKLCRGSGD+EA V+FLKHNV+DEYDEQSEVAERLRIKTVPLFHFYK+GV
Sbjct: 122 GSCKYIEQGFAKLCRGSGDEEASVVFLKHNVIDEYDEQSEVAERLRIKTVPLFHFYKNGV 181

Query: 222 LLEAFPTRDKERILAAITKYSSTALQL 245
           LLE+FPTRDKE+I+AAI KY+S A Q+
Sbjct: 182 LLESFPTRDKEKIVAAIRKYTSPASQI 205

[Close]

BLAST of Carg26150 vs. TrEMBL
Match: tr|E0CPV6|E0CPV6_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g10510 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.0e-65
Identity = 138/214 (64.49%), Postives = 158/214 (73.83%), Query Frame = 0


Query: 42  QNQNVLKCKALLSVGK----LESRIIPISIPFWLSENPHVRLSITRPEAPPYLSIRHELM 101
           Q Q+VL  KA  + GK     ++R IP  +P  L +  HVR    R E P  + I     
Sbjct: 2   QRQSVLYNKASFNFGKNSDGFDTR-IPCILPSLLPDRIHVRSCFLRAEIPSSIKIESLDF 61

Query: 102 FK--------SKPRVAAGNQGGLSDEDDDLCPVECVREFKTDEEFIRILERAKESGALVV 161
            K            VA  N+G LSDEDD+LCPV+CVREFKTDEEF RILE+AKE+ +LVV
Sbjct: 62  TKIGCTFRQAEVRSVAYENEGELSDEDDELCPVDCVREFKTDEEFSRILEKAKETNSLVV 121

Query: 162 VDFYRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKTVPL 221
           VDFYRTSCGSCKYIEQGFAKLC+GSGD+EA VIFLKHNV+DEYDE+SEVAERLRIK VPL
Sbjct: 122 VDFYRTSCGSCKYIEQGFAKLCKGSGDEEAAVIFLKHNVIDEYDEESEVAERLRIKAVPL 181

Query: 222 FHFYKDGVLLEAFPTRDKERILAAITKYSSTALQ 244
           FHFYKDGVLLE+FPTRDKERI+AAI KY+S A Q
Sbjct: 182 FHFYKDGVLLESFPTRDKERIIAAILKYTSPASQ 214

The following BLAST results are available for this feature:

BLAST of Carg26150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951253.1	3.7e-135	100.00	thioredoxin-like 4, chloroplastic [Cucurbita moschata]	[more]
XP_023537391.1	4.1e-134	99.18	thioredoxin-like 4, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_023522900.1	1.2e-112	99.51	thioredoxin-like 4, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_023001835.1	1.2e-109	97.57	thioredoxin-like 4, chloroplastic [Cucurbita maxima]	[more]
XP_008444622.1	1.9e-86	79.25	PREDICTED: thioredoxin-like 4, chloroplastic [Cucumis melo]	[more]

BLAST of Carg26150 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07700.3	1.5e-61	67.25	Thioredoxin superfamily protein	[more]
AT5G42980.1	2.0e-10	33.64	thioredoxin 3	[more]
AT4G26160.1	3.8e-09	38.55	atypical CYS HIS rich thioredoxin 1	[more]
AT3G51030.1	1.1e-08	36.11	thioredoxin H-type 1	[more]
AT4G29670.2	1.9e-08	36.17	atypical CYS HIS rich thioredoxin 2	[more]

BLAST of Carg26150 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9C5C5\|TRL4_ARATH	2.7e-60	67.25	Thioredoxin-like 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g07700 P...	[more]
sp\|Q6YTI3\|TRL4_ORYSJ	5.9e-52	79.17	Thioredoxin-like 4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os...	[more]
sp\|P10639\|THIO_MOUSE	5.6e-10	36.84	Thioredoxin OS=Mus musculus OX=10090 GN=Txn PE=1 SV=3	[more]
sp\|P11232\|THIO_RAT	2.1e-09	35.96	Thioredoxin OS=Rattus norvegicus OX=10116 GN=Txn PE=1 SV=2	[more]
sp\|Q42403\|TRXH3_ARATH	3.6e-09	33.64	Thioredoxin H3 OS=Arabidopsis thaliana OX=3702 GN=TRX3 PE=1 SV=1	[more]

BLAST of Carg26150 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BBI1\|A0A1S3BBI1_CUCME	1.2e-86	79.25	thioredoxin-like 4, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487891 PE=4 S...	[more]
tr\|A0A0A0LP39\|A0A0A0LP39_CUCSA	3.6e-86	79.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G357300 PE=4 SV=1	[more]
tr\|A0A2N9FZ02\|A0A2N9FZ02_FAGSY	1.8e-66	65.85	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20237 PE=4 SV=1	[more]
tr\|A0A2P5F8R7\|A0A2P5F8R7_9ROSA	2.0e-65	65.22	Thioredoxin OS=Trema orientalis OX=63057 GN=TorRG33x02_099280 PE=4 SV=1	[more]
tr\|E0CPV6\|E0CPV6_VITVI	2.0e-65	64.49	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g10510 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006662	glycerol ether metabolic process
GO:0045454	cell redox homeostasis

Vocabulary: **Molecular Function**
Term	Definition
GO:0015035	protein disulfide oxidoreductase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR036249	Thioredoxin-like_sf
IPR005746	Thioredoxin
IPR013766	Thioredoxin_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0006662	glycerol ether metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0015035	protein disulfide oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26150-RA	Carg26150-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.40.30.10		coord: 114..241 e-value: 1.1E-17 score: 65.9
None	No IPR available	PANTHER	PTHR10438:SF229	THIOREDOXIN-LIKE 4, CHLOROPLASTIC	coord: 80..237
None	No IPR available	CDD	cd02947	TRX_family	coord: 138..234 e-value: 2.86379E-17 score: 73.3612
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 130..236 e-value: 3.5E-11 score: 42.9
IPR013766	Thioredoxin domain	PROSITE	PS51352	THIOREDOXIN_2	coord: 100..239 score: 9.702
IPR005746	Thioredoxin	PANTHER	PTHR10438	THIOREDOXIN	coord: 80..237
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	SSF52833	Thioredoxin-like	coord: 117..237

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26150	Cla022572	Watermelon (97103) v1	carwmB0075
Carg26150	Csa2G357300	Cucumber (Chinese Long) v2	carcuB0086
Carg26150	MELO3C010860	Melon (DHL92) v3.5.1	carmeB0077
Carg26150	ClCG08G015940	Watermelon (Charleston Gray)	carwcgB0076
Carg26150	CSPI02G19100	Wild cucumber (PI 183967)	carcpiB0090
Carg26150	Lsi08G014710	Bottle gourd (USVL1VR-Ls)	carlsiB068
Carg26150	Cp4.1LG07g05320	Cucurbita pepo (Zucchini)	carcpeB0113
Carg26150	CsGy2G018990	Cucumber (Gy14) v2	carcgybB0086
Carg26150	MELO3C010860.2	Melon (DHL92) v3.6.1	carmedB0078
Carg26150	CsaV3_2G027800	Cucumber (Chinese Long) v3	carcucB0093
Carg26150	Cla97C08G159500	Watermelon (97103) v2	carwmbB0074
Carg26150	Bhi04G000320	Wax gourd	carwgoB0089

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg26150	Silver-seed gourd	carcarB090
Carg26150	Cucurbita maxima (Rimu)	carcmaB0100
Carg26150	Cucurbita maxima (Rimu)	carcmaB0101
Carg26150	Cucurbita moschata (Rifu)	carcmoB0108
Carg26150	Cucurbita moschata (Rifu)	carcmoB0109
Carg26150	Cucurbita pepo (Zucchini)	carcpeB0112