Cp4.1LG07g05320 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG07g05320
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionThioredoxin, putative
LocationCp4.1LG07 : 3135639 .. 3137476 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATTGATAAAATTGATACTTTTGCTACCCATTCAATATTGGGCTTGGGCTGCTCCAACTTCTGATTTGTAGAAGAACCCATGAATCAATCCATGTCCACAAAACCTCCCACGTGAAAGGGAAATCAATGGCAACCAAAGGAAGAAGATAATGGTGGAGTCGTGTCATTTTCTCGTTCGCAGCTGCTCCTCTGCTCTTCTTCCCGCTCAGAGGTAAGCCACTGGTCCAACATTTGTTGCTTTCCACCATCAATTTTGTACCTCCTAACAGTCATTTTTCATCTTTCTGAATCGTTCATCGAAATTGCCTCTTTGATTACTGTTAAATAACACAACAAGATTGAAATACTGAATTGAATGCTACATCTGAATCTGTTTTCATTAGTTTTCCGATAGAAGTTCATTCACTAAACAAGACCCAAATCCTATATGTTGCAATGCAAAGACAGAACCAGAATGTACTGAAATGTAAAGCATTACTCAGTGTTGGAAAGCTCGAATCGAGAATAATACCCATTTCAATTCCCTTCTGGTTGTCTGAAAACCCGCATGTTCGATTGTCGATTACAAGGCCCGAAGCTCCACCATATCTGAGTATCAGACATGAATTGATGTTCAAGAGTAAACCCAGAGTTGCTGCTGGAAATCAGGCGGGGTTGTCCGACGAAGACGATGATCTTTGCCCTGTAGAATGTGTGAGGGAGTTCAAGACGGATGAAGAGTTCATCAGAATTCTAGACAGGGCAAAGGAAAGTGGAGCGCTGGTGGTTGTGGACTTTTATCGAACATCTTGTGGGAGTTGCAAGTACATAGAACAAGGGTTTGCGAAATTGTGCAGGGGATCTGGAGATCAAGAGGCTCCGGTTATCTTCTTGAAGCACAATGTGAGTAATCCATATCAGAGAAGTTGTTTTGTTGGAGAAATGAATTTGATTCTGGAACTGAATGCTTGTGATTTTAGGTCGTTGATGAATATGATGAACAATCTGAGGTTGCTGAACGACTGAGGATCAAGGTAAGTTTCTTTTCTCCTTCTTAATTAAATTATCTGAATGAACTCGTTGCTTCTGAAAATTTAGAGACTTAAACCATTTCTTAATCCCTTTTTCTAATCTTCAACAAATATCAAGAATGATTACCCATCCTCATCGATGAAAAGGGTATATGATCTGATCATCCTGTAGGTAACGAGGAGTTAGTGGTTTATTTTGTTGACTAATGTTGAAATTTGATGGGTGCAGACAGTGCCACTGTTCCACTTTTATAAAGATGGTGTGTTATTAGAAGCATTTCCCACTAGAGATAAAGAGAGGATTCTTGCAGCCATAACCAAATATTCATCCACTGCTCTTCAATTATGATTTTATCATTGTTCTTCTACACAAAACCTTTCTTATAATATCACCAAACAAACCCAAAATTCCGATACCAACCTCCATCTGTCCCTTCATCTGATATGAGTTCTTTGAACTATGTTCTTGATGAATATATTTGTTGTGAATTGTCACGATGATTTGGTTCATGAATTTCTTGGATTCATGGATGCTTTTGGTACATTTGCCATTTCAATTCATGAATCTATTGGATTCATTTAGTTCATCTCCCATATTGATACATTCTCTCATATTGGTACATGAATCATCTTAATTCGTGTATGAGCATTAGTATTGCTTTGATTCATGTATGAGAATTAATATTGTTAGGTCTGTATAAAGGTTTGTTACTAACATTGTTTTGAGACGTGGAGTTGTTGTCATTTTGTATTTGTCTAAAGACAATTGAGAGGAACTTTGTAAGTGAGACTTTGTAGCGTGAGAGTGTGAGAGATATACTTGTAAA

mRNA sequence

AAATTGATAAAATTGATACTTTTGCTACCCATTCAATATTGGGCTTGGGCTGCTCCAACTTCTGATTTGTAGAAGAACCCATGAATCAATCCATGTCCACAAAACCTCCCACGTGAAAGGGAAATCAATGGCAACCAAAGGAAGAAGATAATGGTGGAGTCGTGTCATTTTCTCGTTCGCAGCTGCTCCTCTGCTCTTCTTCCCGCTCAGAGTTTTCCGATAGAAGTTCATTCACTAAACAAGACCCAAATCCTATATGTTGCAATGCAAAGACAGAACCAGAATGTACTGAAATGTAAAGCATTACTCAGTGTTGGAAAGCTCGAATCGAGAATAATACCCATTTCAATTCCCTTCTGGTTGTCTGAAAACCCGCATGTTCGATTGTCGATTACAAGGCCCGAAGCTCCACCATATCTGAGTATCAGACATGAATTGATGTTCAAGAGTAAACCCAGAGTTGCTGCTGGAAATCAGGCGGGGTTGTCCGACGAAGACGATGATCTTTGCCCTGTAGAATGTGTGAGGGAGTTCAAGACGGATGAAGAGTTCATCAGAATTCTAGACAGGGCAAAGGAAAGTGGAGCGCTGGTGGTTGTGGACTTTTATCGAACATCTTGTGGGAGTTGCAAGTACATAGAACAAGGGTTTGCGAAATTGTGCAGGGGATCTGGAGATCAAGAGGCTCCGGTTATCTTCTTGAAGCACAATGTCGTTGATGAATATGATGAACAATCTGAGGTTGCTGAACGACTGAGGATCAAGACAGTGCCACTGTTCCACTTTTATAAAGATGGTGTGTTATTAGAAGCATTTCCCACTAGAGATAAAGAGAGGATTCTTGCAGCCATAACCAAATATTCATCCACTGCTCTTCAATTATGATTTTATCATTGTTCTTCTACACAAAACCTTTCTTATAATATCACCAAACAAACCCAAAATTCCGATACCAACCTCCATCTGTCCCTTCATCTGATATGAGTTCTTTGAACTATGTTCTTGATGAATATATTTGTTGTGAATTGTCACGATGATTTGGTTCATGAATTTCTTGGATTCATGGATGCTTTTGGTACATTTGCCATTTCAATTCATGAATCTATTGGATTCATTTAGTTCATCTCCCATATTGATACATTCTCTCATATTGGTACATGAATCATCTTAATTCGTGTATGAGCATTAGTATTGCTTTGATTCATGTATGAGAATTAATATTGTTAGGTCTGTATAAAGGTTTGTTACTAACATTGTTTTGAGACGTGGAGTTGTTGTCATTTTGTATTTGTCTAAAGACAATTGAGAGGAACTTTGTAAGTGAGACTTTGTAGCGTGAGAGTGTGAGAGATATACTTGTAAA

Coding sequence (CDS)

ATGGTGGAGTCGTGTCATTTTCTCGTTCGCAGCTGCTCCTCTGCTCTTCTTCCCGCTCAGAGTTTTCCGATAGAAGTTCATTCACTAAACAAGACCCAAATCCTATATGTTGCAATGCAAAGACAGAACCAGAATGTACTGAAATGTAAAGCATTACTCAGTGTTGGAAAGCTCGAATCGAGAATAATACCCATTTCAATTCCCTTCTGGTTGTCTGAAAACCCGCATGTTCGATTGTCGATTACAAGGCCCGAAGCTCCACCATATCTGAGTATCAGACATGAATTGATGTTCAAGAGTAAACCCAGAGTTGCTGCTGGAAATCAGGCGGGGTTGTCCGACGAAGACGATGATCTTTGCCCTGTAGAATGTGTGAGGGAGTTCAAGACGGATGAAGAGTTCATCAGAATTCTAGACAGGGCAAAGGAAAGTGGAGCGCTGGTGGTTGTGGACTTTTATCGAACATCTTGTGGGAGTTGCAAGTACATAGAACAAGGGTTTGCGAAATTGTGCAGGGGATCTGGAGATCAAGAGGCTCCGGTTATCTTCTTGAAGCACAATGTCGTTGATGAATATGATGAACAATCTGAGGTTGCTGAACGACTGAGGATCAAGACAGTGCCACTGTTCCACTTTTATAAAGATGGTGTGTTATTAGAAGCATTTCCCACTAGAGATAAAGAGAGGATTCTTGCAGCCATAACCAAATATTCATCCACTGCTCTTCAATTATGA

Protein sequence

MVESCHFLVRSCSSALLPAQSFPIEVHSLNKTQILYVAMQRQNQNVLKCKALLSVGKLESRIIPISIPFWLSENPHVRLSITRPEAPPYLSIRHELMFKSKPRVAAGNQAGLSDEDDDLCPVECVREFKTDEEFIRILDRAKESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILAAITKYSSTALQL
BLAST of Cp4.1LG07g05320 vs. Swiss-Prot
Match: TRL4_ARATH (Thioredoxin-like 4, chloroplastic OS=Arabidopsis thaliana GN=At1g07700 PE=2 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 3.4e-60
Identity = 114/171 (66.67%), Postives = 137/171 (80.12%), Query Frame = 1

Query: 70  WLSENPHVRLSITRPEAPPYLSIRHELMFKSKPRVAAGNQAGLSDEDDDLCPVECVREFK 129
           W+  N  VRLS  R E+   +++   L       ++  N   LSDE+DDLCPVECV EFK
Sbjct: 32  WVWHNNGVRLSFPRAESSINITMGCTLQRGIAKSLSQENLVELSDENDDLCPVECVTEFK 91

Query: 130 TDEEFIRILDRAKESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFLKHNVV 189
           TD+E + +L+++KE+ +LVVVDFYRT+CGSCKYIEQGF+KLC+ SGDQEAPVIFLKHNVV
Sbjct: 92  TDDELLSVLEKSKETNSLVVVDFYRTACGSCKYIEQGFSKLCKQSGDQEAPVIFLKHNVV 151

Query: 190 DEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILAAITKYSST 241
           DEYDEQSEVAERLRIK VPLFHFYK+GVLLE+F TRDKERI AAI KY+S+
Sbjct: 152 DEYDEQSEVAERLRIKAVPLFHFYKNGVLLESFATRDKERIDAAILKYTSS 202

BLAST of Cp4.1LG07g05320 vs. Swiss-Prot
Match: TRL4_ORYSJ (Thioredoxin-like 4, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0567100 PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 4.0e-53
Identity = 95/128 (74.22%), Postives = 114/128 (89.06%), Query Frame = 1

Query: 112 LSDEDDDLCPVECVREFKTDEEFIRILDRAKESGALVVVDFYRTSCGSCKYIEQGFAKLC 171
           + +E+++ CPVECV EFKT+EE  R+L+RAK +GALVVVDF+R SCGSCKYIEQGF KLC
Sbjct: 72  VEEEEEEFCPVECVTEFKTEEELARVLERAKATGALVVVDFFRPSCGSCKYIEQGFMKLC 131

Query: 172 RGSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERIL 231
           +GSGD  + V+FLKHNV+DEYDEQSEVA+RLRIK VPLFHFYK+GVLLEAF TRDKERI+
Sbjct: 132 KGSGDHGSSVVFLKHNVIDEYDEQSEVADRLRIKVVPLFHFYKNGVLLEAFATRDKERII 191

Query: 232 AAITKYSS 240
           AAI KY++
Sbjct: 192 AAIQKYTA 199

BLAST of Cp4.1LG07g05320 vs. Swiss-Prot
Match: THIO_MOUSE (Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3)

HSP 1 Score: 65.9 bits (159), Expect = 7.2e-10
Identity = 42/114 (36.84%), Postives = 63/114 (55.26%), Query Frame = 1

Query: 125 VREFKTDEEFIRILDRAKESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFL 184
           V+  ++ E F   L  A +   LVVVDF  T CG CK I+  F  LC    D+ + V+FL
Sbjct: 2   VKLIESKEAFQEALAAAGDK--LVVVDFSATWCGPCKMIKPFFHSLC----DKYSNVVFL 61

Query: 185 KHNVVDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILAAITKYS 239
           + +V    D+  +VA    +K +P F FYK G  +  F   +KE++ A+IT+Y+
Sbjct: 62  EVDV----DDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASITEYA 105

BLAST of Cp4.1LG07g05320 vs. Swiss-Prot
Match: THIO_RAT (Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 2.7e-09
Identity = 41/114 (35.96%), Postives = 62/114 (54.39%), Query Frame = 1

Query: 125 VREFKTDEEFIRILDRAKESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFL 184
           V+  ++ E F   L  A +   LVVVDF  T CG CK I+  F  LC    D+ + V+FL
Sbjct: 2   VKLIESKEAFQEALAAAGDK--LVVVDFSATWCGPCKMIKPFFHSLC----DKYSNVVFL 61

Query: 185 KHNVVDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILAAITKYS 239
           + +V    D+  +VA    +K +P F FYK G  +  F   +KE++ A IT+++
Sbjct: 62  EVDV----DDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEATITEFA 105

BLAST of Cp4.1LG07g05320 vs. Swiss-Prot
Match: TRL2_ORYSJ (Thioredoxin-like 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0200100 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.1e-09
Identity = 48/159 (30.19%), Postives = 77/159 (48.43%), Query Frame = 1

Query: 72  SENPHVRLSITRPEAPPYLSIRHELMFKSKPRVAAGNQAGL-----SDEDDDLCPVECVR 131
           S +PH  LS   P  P   +       + K   A  +++        +   ++  +   +
Sbjct: 29  SPSPHCLLSRANPRPPRLAAPSPPRHRRLKAHAAVSDKSEQPKWWEKNAGPNMIDIHSTQ 88

Query: 132 EFKTDEEFIRILDRAKESG-ALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFLK 191
           EF         LD  +++G  LV+V+FY T CGSC+ +   F +LCR +  +   ++FLK
Sbjct: 89  EF---------LDALRDAGDRLVIVEFYGTWCGSCRAL---FPRLCR-TAVENPDILFLK 148

Query: 192 HNVVDEYDEQSEVAERLRIKTVPLFHFYK--DGVLLEAF 223
            N    +DE   + +RL +K +P FHFY+  DG  LEAF
Sbjct: 149 VN----FDENKPMCKRLNVKVLPYFHFYRGADG-QLEAF 169

BLAST of Cp4.1LG07g05320 vs. TrEMBL
Match: A0A0A0LP39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G357300 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 3.3e-86
Identity = 168/212 (79.25%), Postives = 184/212 (86.79%), Query Frame = 1

Query: 39  MQRQNQNVLKCKALLSVG-----KLESRIIPISIPFWLS-ENPHVRLSITRPEAPPYLSI 98
           MQRQNQNVL+CK L+S G     K+E RI PI IP WLS E   VRLSITRPE P     
Sbjct: 1   MQRQNQNVLQCKTLISFGLNPNEKMEPRI-PILIPRWLSSEKEPVRLSITRPEVP----- 60

Query: 99  RHELMFKSKPRVAAGNQAGLSDEDDDLCPVECVREFKTDEEFIRILDRAKESGALVVVDF 158
           R++L++KSK RV AGNQ  LSDEDDDLCPV+CVREFKTDEEFI+ILD+AKE+G LVVVDF
Sbjct: 61  RNQLLYKSKMRVNAGNQGELSDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDF 120

Query: 159 YRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKTVPLFHF 218
           YRTSCGSCKYIEQGFAKLC+GSGDQ+APVIFLKHNV+DEYDEQSEVAERLRIKTVPLFHF
Sbjct: 121 YRTSCGSCKYIEQGFAKLCKGSGDQQAPVIFLKHNVMDEYDEQSEVAERLRIKTVPLFHF 180

Query: 219 YKDGVLLEAFPTRDKERILAAITKYSSTALQL 245
           YKDGVLLEAFPTRDKERIL AITKYSS+ LQ+
Sbjct: 181 YKDGVLLEAFPTRDKERILTAITKYSSSPLQI 206

BLAST of Cp4.1LG07g05320 vs. TrEMBL
Match: E0CPV6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g10510 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 1.2e-64
Identity = 135/213 (63.38%), Postives = 154/213 (72.30%), Query Frame = 1

Query: 42  QNQNVLKCKALLSVGKLESRI---IPISIPFWLSENPHVRLSITRPEAPPYLSIRHELMF 101
           Q Q+VL  KA  + GK        IP  +P  L +  HVR    R E P  + I      
Sbjct: 2   QRQSVLYNKASFNFGKNSDGFDTRIPCILPSLLPDRIHVRSCFLRAEIPSSIKIESLDFT 61

Query: 102 K--------SKPRVAAGNQAGLSDEDDDLCPVECVREFKTDEEFIRILDRAKESGALVVV 161
           K            VA  N+  LSDEDD+LCPV+CVREFKTDEEF RIL++AKE+ +LVVV
Sbjct: 62  KIGCTFRQAEVRSVAYENEGELSDEDDELCPVDCVREFKTDEEFSRILEKAKETNSLVVV 121

Query: 162 DFYRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKTVPLF 221
           DFYRTSCGSCKYIEQGFAKLC+GSGD+EA VIFLKHNV+DEYDE+SEVAERLRIK VPLF
Sbjct: 122 DFYRTSCGSCKYIEQGFAKLCKGSGDEEAAVIFLKHNVIDEYDEESEVAERLRIKAVPLF 181

Query: 222 HFYKDGVLLEAFPTRDKERILAAITKYSSTALQ 244
           HFYKDGVLLE+FPTRDKERI+AAI KY+S A Q
Sbjct: 182 HFYKDGVLLESFPTRDKERIIAAILKYTSPASQ 214

BLAST of Cp4.1LG07g05320 vs. TrEMBL
Match: I1K7Z7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G039900 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 2.7e-64
Identity = 132/203 (65.02%), Postives = 153/203 (75.37%), Query Frame = 1

Query: 37  VAMQRQNQNVLKCKALLSVGKLESRIIPISIPFWLSENPHVRLSITRPEAPPYLSIRHEL 96
           V +  QN        L +  K++SRI  +     +  + H  L     +  P + IRH  
Sbjct: 14  VVISGQNSKSFVNVRLDTQKKVKSRISHVVFSL-VPRHSHGNLCFGGTKVEPLVKIRHTF 73

Query: 97  MFKSKPRVAAGNQAGLSDEDDDLCPVECVREFKTDEEFIRILDRAKESGALVVVDFYRTS 156
            F S+ RVA   Q GLSDEDDDLCPVECVREF TDEEF +ILD+AKE+G+LVVVDF+RTS
Sbjct: 74  -FPSRIRVAEEYQEGLSDEDDDLCPVECVREFTTDEEFSKILDKAKETGSLVVVDFFRTS 133

Query: 157 CGSCKYIEQGFAKLCRGSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKTVPLFHFYKDG 216
           CGSCKYIEQGFAKLC+ SGD EAPVIFLKHNV+DEYDEQSEVA+RLRI+ VPLFHFYKDG
Sbjct: 134 CGSCKYIEQGFAKLCKKSGDHEAPVIFLKHNVMDEYDEQSEVADRLRIRAVPLFHFYKDG 193

Query: 217 VLLEAFPTRDKERILAAITKYSS 240
           VLLEAFPTRDK+RI+AAI KYSS
Sbjct: 194 VLLEAFPTRDKDRIVAAILKYSS 214

BLAST of Cp4.1LG07g05320 vs. TrEMBL
Match: K7KHY6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G038900 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.0e-63
Identity = 134/217 (61.75%), Postives = 156/217 (71.89%), Query Frame = 1

Query: 23  PIEVHSLNKTQILYVAMQRQNQNVLKCKALLSVGKLESRIIPISIPFWLSENPHVRLSIT 82
           P+ +   N    + V +  Q Q  ++C+   +V  L  R I            H +L   
Sbjct: 6   PVIIPGQNSKSFVSVRLDIQKQ--VECRISRAVFSLVPRHI------------HGKLCFG 65

Query: 83  RPEAPPYLSIRHELMFKSKPRVAAGNQAGLSDEDDDLCPVECVREFKTDEEFIRILDRAK 142
             +  P + IRH     S+ RVA   Q GLSDEDDDLCPVECVREF TDEEF +ILD+AK
Sbjct: 66  GTKVEPLVKIRHTFC-PSRIRVAEEYQEGLSDEDDDLCPVECVREFTTDEEFSKILDKAK 125

Query: 143 ESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFLKHNVVDEYDEQSEVAERL 202
           E+G+LVVVDF+RTSCGSCKYIEQGFAKLC+ SGD EAPVIFLKHNV+DEYDEQSEVA+RL
Sbjct: 126 ETGSLVVVDFFRTSCGSCKYIEQGFAKLCKKSGDHEAPVIFLKHNVMDEYDEQSEVADRL 185

Query: 203 RIKTVPLFHFYKDGVLLEAFPTRDKERILAAITKYSS 240
           RI+ VPLFHFYKDGVLLEAFPTRDK+RILAAI KYSS
Sbjct: 186 RIRAVPLFHFYKDGVLLEAFPTRDKDRILAAILKYSS 207

BLAST of Cp4.1LG07g05320 vs. TrEMBL
Match: A0A0B2PA98_GLYSO (Thioredoxin-like 4, chloroplastic OS=Glycine soja GN=glysoja_019586 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.0e-63
Identity = 134/217 (61.75%), Postives = 156/217 (71.89%), Query Frame = 1

Query: 23  PIEVHSLNKTQILYVAMQRQNQNVLKCKALLSVGKLESRIIPISIPFWLSENPHVRLSIT 82
           P+ +   N    + V +  Q Q  ++C+   +V  L  R I            H +L   
Sbjct: 6   PVIIPGQNSKSFVSVRLDIQKQ--VECRISRAVFSLVPRHI------------HGKLCFG 65

Query: 83  RPEAPPYLSIRHELMFKSKPRVAAGNQAGLSDEDDDLCPVECVREFKTDEEFIRILDRAK 142
             +  P + IRH     S+ RVA   Q GLSDEDDDLCPVECVREF TDEEF +ILD+AK
Sbjct: 66  GTKVEPLVKIRHTFC-PSRIRVAEEYQEGLSDEDDDLCPVECVREFTTDEEFSKILDKAK 125

Query: 143 ESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFLKHNVVDEYDEQSEVAERL 202
           E+G+LVVVDF+RTSCGSCKYIEQGFAKLC+ SGD EAPVIFLKHNV+DEYDEQSEVA+RL
Sbjct: 126 ETGSLVVVDFFRTSCGSCKYIEQGFAKLCKKSGDHEAPVIFLKHNVMDEYDEQSEVADRL 185

Query: 203 RIKTVPLFHFYKDGVLLEAFPTRDKERILAAITKYSS 240
           RI+ VPLFHFYKDGVLLEAFPTRDK+RILAAI KYSS
Sbjct: 186 RIRAVPLFHFYKDGVLLEAFPTRDKDRILAAILKYSS 207

BLAST of Cp4.1LG07g05320 vs. TAIR10
Match: AT1G07700.3 (AT1G07700.3 Thioredoxin superfamily protein)

HSP 1 Score: 233.0 bits (593), Expect = 1.9e-61
Identity = 114/171 (66.67%), Postives = 137/171 (80.12%), Query Frame = 1

Query: 70  WLSENPHVRLSITRPEAPPYLSIRHELMFKSKPRVAAGNQAGLSDEDDDLCPVECVREFK 129
           W+  N  VRLS  R E+   +++   L       ++  N   LSDE+DDLCPVECV EFK
Sbjct: 45  WVWHNNGVRLSFPRAESSINITMGCTLQRGIAKSLSQENLVELSDENDDLCPVECVTEFK 104

Query: 130 TDEEFIRILDRAKESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFLKHNVV 189
           TD+E + +L+++KE+ +LVVVDFYRT+CGSCKYIEQGF+KLC+ SGDQEAPVIFLKHNVV
Sbjct: 105 TDDELLSVLEKSKETNSLVVVDFYRTACGSCKYIEQGFSKLCKQSGDQEAPVIFLKHNVV 164

Query: 190 DEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILAAITKYSST 241
           DEYDEQSEVAERLRIK VPLFHFYK+GVLLE+F TRDKERI AAI KY+S+
Sbjct: 165 DEYDEQSEVAERLRIKAVPLFHFYKNGVLLESFATRDKERIDAAILKYTSS 215

BLAST of Cp4.1LG07g05320 vs. TAIR10
Match: AT5G42980.1 (AT5G42980.1 thioredoxin 3)

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-10
Identity = 38/110 (34.55%), Postives = 58/110 (52.73%), Query Frame = 1

Query: 130 TDEEFIRILDRAKESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFLKHNVV 189
           T E++   L  A ES  L+V+DF  T C  C++I   FA L +   D    V+F K +V 
Sbjct: 12  TVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLD----VVFFKVDV- 71

Query: 190 DEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILAAITKYSS 240
              DE + VAE  +++ +P F F K+G + E      KE I+A + K+ +
Sbjct: 72  ---DELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKHKT 113

BLAST of Cp4.1LG07g05320 vs. TAIR10
Match: AT4G26160.1 (AT4G26160.1 atypical CYS HIS rich thioredoxin 1)

HSP 1 Score: 59.3 bits (142), Expect = 3.8e-09
Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = 1

Query: 136 RILDRAKESG-ALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFLKHNVVDEYDE 195
           + L+  K++G  LV+VDFY T CGSC+ +   F KLC+ +  +   ++FLK N    +DE
Sbjct: 103 QFLNALKDAGDRLVIVDFYGTWCGSCRAM---FPKLCK-TAKEHPNILFLKVN----FDE 162

Query: 196 QSEVAERLRIKTVPLFHFYK 215
              + + L +K +P FHFY+
Sbjct: 163 NKSLCKSLNVKVLPYFHFYR 174

BLAST of Cp4.1LG07g05320 vs. TAIR10
Match: AT4G29670.2 (AT4G29670.2 atypical CYS HIS rich thioredoxin 2)

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-08
Identity = 34/94 (36.17%), Postives = 53/94 (56.38%), Query Frame = 1

Query: 127 EFKTDEEFIRILDRAKESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFLKH 186
           +  + EEF+  L  A E   LV+V+FY T C SC+ +   F KLC+ +  +   ++FLK 
Sbjct: 107 DIHSTEEFLSALSGAGER--LVIVEFYGTWCASCRAL---FPKLCK-TAVEHPDIVFLKV 166

Query: 187 NVVDEYDEQSEVAERLRIKTVPLFHFYK--DGVL 219
           N    +DE   + + L ++ +P FHFY+  DG L
Sbjct: 167 N----FDENKPMCKSLNVRVLPFFHFYRGADGQL 190

BLAST of Cp4.1LG07g05320 vs. TAIR10
Match: AT3G51030.1 (AT3G51030.1 thioredoxin H-type 1)

HSP 1 Score: 57.0 bits (136), Expect = 1.9e-08
Identity = 39/108 (36.11%), Postives = 56/108 (51.85%), Query Frame = 1

Query: 130 TDEEFIRILDRAKESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFLKHNVV 189
           T E +   L +A ES  LVVVDF  + CG C++I   FA L +    +   V+FLK   V
Sbjct: 13  TVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAK----KLPNVLFLK---V 72

Query: 190 DEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILAAITKY 238
           D  DE   VA    I+ +P F F K+G +L+      K+ + + I K+
Sbjct: 73  DT-DELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKH 112

BLAST of Cp4.1LG07g05320 vs. NCBI nr
Match: gi|659087759|ref|XP_008444622.1| (PREDICTED: thioredoxin-like 4, chloroplastic [Cucumis melo])

HSP 1 Score: 327.8 bits (839), Expect = 1.6e-86
Identity = 168/212 (79.25%), Postives = 184/212 (86.79%), Query Frame = 1

Query: 39  MQRQNQNVLKCKALLSVG-----KLESRIIPISIPFWLS-ENPHVRLSITRPEAPPYLSI 98
           MQRQNQNVL+CK L+S G     KLESRI PI IP WLS E   VRLSITRPE P     
Sbjct: 1   MQRQNQNVLQCKTLISFGLHPNEKLESRI-PILIPRWLSSEKEPVRLSITRPEVP----- 60

Query: 99  RHELMFKSKPRVAAGNQAGLSDEDDDLCPVECVREFKTDEEFIRILDRAKESGALVVVDF 158
           RH+L++KSK RV AGNQ  + DEDDDLCPV+CVREFKTDEEFI+ILD+AKE+G LVVVDF
Sbjct: 61  RHQLLYKSKMRVNAGNQGEMGDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDF 120

Query: 159 YRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKTVPLFHF 218
           YRTSCGSCKYIEQGFAKLC+GSGDQ+APVIFLKHNV+DEYDEQSEVAERLRIK+VPLFHF
Sbjct: 121 YRTSCGSCKYIEQGFAKLCKGSGDQQAPVIFLKHNVMDEYDEQSEVAERLRIKSVPLFHF 180

Query: 219 YKDGVLLEAFPTRDKERILAAITKYSSTALQL 245
           YKDGVLLEAFPTRDKERIL AITKYSS+ LQ+
Sbjct: 181 YKDGVLLEAFPTRDKERILTAITKYSSSPLQI 206

BLAST of Cp4.1LG07g05320 vs. NCBI nr
Match: gi|449466338|ref|XP_004150883.1| (PREDICTED: thioredoxin-like 4, chloroplastic [Cucumis sativus])

HSP 1 Score: 326.2 bits (835), Expect = 4.7e-86
Identity = 168/212 (79.25%), Postives = 184/212 (86.79%), Query Frame = 1

Query: 39  MQRQNQNVLKCKALLSVG-----KLESRIIPISIPFWLS-ENPHVRLSITRPEAPPYLSI 98
           MQRQNQNVL+CK L+S G     K+E RI PI IP WLS E   VRLSITRPE P     
Sbjct: 1   MQRQNQNVLQCKTLISFGLNPNEKMEPRI-PILIPRWLSSEKEPVRLSITRPEVP----- 60

Query: 99  RHELMFKSKPRVAAGNQAGLSDEDDDLCPVECVREFKTDEEFIRILDRAKESGALVVVDF 158
           R++L++KSK RV AGNQ  LSDEDDDLCPV+CVREFKTDEEFI+ILD+AKE+G LVVVDF
Sbjct: 61  RNQLLYKSKMRVNAGNQGELSDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDF 120

Query: 159 YRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKTVPLFHF 218
           YRTSCGSCKYIEQGFAKLC+GSGDQ+APVIFLKHNV+DEYDEQSEVAERLRIKTVPLFHF
Sbjct: 121 YRTSCGSCKYIEQGFAKLCKGSGDQQAPVIFLKHNVMDEYDEQSEVAERLRIKTVPLFHF 180

Query: 219 YKDGVLLEAFPTRDKERILAAITKYSSTALQL 245
           YKDGVLLEAFPTRDKERIL AITKYSS+ LQ+
Sbjct: 181 YKDGVLLEAFPTRDKERILTAITKYSSSPLQI 206

BLAST of Cp4.1LG07g05320 vs. NCBI nr
Match: gi|225458613|ref|XP_002284743.1| (PREDICTED: thioredoxin-like 4, chloroplastic [Vitis vinifera])

HSP 1 Score: 254.6 bits (649), Expect = 1.7e-64
Identity = 135/213 (63.38%), Postives = 154/213 (72.30%), Query Frame = 1

Query: 42  QNQNVLKCKALLSVGKLESRI---IPISIPFWLSENPHVRLSITRPEAPPYLSIRHELMF 101
           Q Q+VL  KA  + GK        IP  +P  L +  HVR    R E P  + I      
Sbjct: 2   QRQSVLYNKASFNFGKNSDGFDTRIPCILPSLLPDRIHVRSCFLRAEIPSSIKIESLDFT 61

Query: 102 K--------SKPRVAAGNQAGLSDEDDDLCPVECVREFKTDEEFIRILDRAKESGALVVV 161
           K            VA  N+  LSDEDD+LCPV+CVREFKTDEEF RIL++AKE+ +LVVV
Sbjct: 62  KIGCTFRQAEVRSVAYENEGELSDEDDELCPVDCVREFKTDEEFSRILEKAKETNSLVVV 121

Query: 162 DFYRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKTVPLF 221
           DFYRTSCGSCKYIEQGFAKLC+GSGD+EA VIFLKHNV+DEYDE+SEVAERLRIK VPLF
Sbjct: 122 DFYRTSCGSCKYIEQGFAKLCKGSGDEEAAVIFLKHNVIDEYDEESEVAERLRIKAVPLF 181

Query: 222 HFYKDGVLLEAFPTRDKERILAAITKYSSTALQ 244
           HFYKDGVLLE+FPTRDKERI+AAI KY+S A Q
Sbjct: 182 HFYKDGVLLESFPTRDKERIIAAILKYTSPASQ 214

BLAST of Cp4.1LG07g05320 vs. NCBI nr
Match: gi|571458843|ref|XP_006581243.1| (PREDICTED: thioredoxin-like 4, chloroplastic [Glycine max])

HSP 1 Score: 253.4 bits (646), Expect = 3.9e-64
Identity = 132/203 (65.02%), Postives = 153/203 (75.37%), Query Frame = 1

Query: 37  VAMQRQNQNVLKCKALLSVGKLESRIIPISIPFWLSENPHVRLSITRPEAPPYLSIRHEL 96
           V +  QN        L +  K++SRI  +     +  + H  L     +  P + IRH  
Sbjct: 14  VVISGQNSKSFVNVRLDTQKKVKSRISHVVFSL-VPRHSHGNLCFGGTKVEPLVKIRHTF 73

Query: 97  MFKSKPRVAAGNQAGLSDEDDDLCPVECVREFKTDEEFIRILDRAKESGALVVVDFYRTS 156
            F S+ RVA   Q GLSDEDDDLCPVECVREF TDEEF +ILD+AKE+G+LVVVDF+RTS
Sbjct: 74  -FPSRIRVAEEYQEGLSDEDDDLCPVECVREFTTDEEFSKILDKAKETGSLVVVDFFRTS 133

Query: 157 CGSCKYIEQGFAKLCRGSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKTVPLFHFYKDG 216
           CGSCKYIEQGFAKLC+ SGD EAPVIFLKHNV+DEYDEQSEVA+RLRI+ VPLFHFYKDG
Sbjct: 134 CGSCKYIEQGFAKLCKKSGDHEAPVIFLKHNVMDEYDEQSEVADRLRIRAVPLFHFYKDG 193

Query: 217 VLLEAFPTRDKERILAAITKYSS 240
           VLLEAFPTRDK+RI+AAI KYSS
Sbjct: 194 VLLEAFPTRDKDRIVAAILKYSS 214

BLAST of Cp4.1LG07g05320 vs. NCBI nr
Match: gi|356510410|ref|XP_003523931.1| (PREDICTED: thioredoxin-like 4, chloroplastic isoform X1 [Glycine max])

HSP 1 Score: 251.5 bits (641), Expect = 1.5e-63
Identity = 134/217 (61.75%), Postives = 156/217 (71.89%), Query Frame = 1

Query: 23  PIEVHSLNKTQILYVAMQRQNQNVLKCKALLSVGKLESRIIPISIPFWLSENPHVRLSIT 82
           P+ +   N    + V +  Q Q  ++C+   +V  L  R I            H +L   
Sbjct: 6   PVIIPGQNSKSFVSVRLDIQKQ--VECRISRAVFSLVPRHI------------HGKLCFG 65

Query: 83  RPEAPPYLSIRHELMFKSKPRVAAGNQAGLSDEDDDLCPVECVREFKTDEEFIRILDRAK 142
             +  P + IRH     S+ RVA   Q GLSDEDDDLCPVECVREF TDEEF +ILD+AK
Sbjct: 66  GTKVEPLVKIRHTFC-PSRIRVAEEYQEGLSDEDDDLCPVECVREFTTDEEFSKILDKAK 125

Query: 143 ESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFLKHNVVDEYDEQSEVAERL 202
           E+G+LVVVDF+RTSCGSCKYIEQGFAKLC+ SGD EAPVIFLKHNV+DEYDEQSEVA+RL
Sbjct: 126 ETGSLVVVDFFRTSCGSCKYIEQGFAKLCKKSGDHEAPVIFLKHNVMDEYDEQSEVADRL 185

Query: 203 RIKTVPLFHFYKDGVLLEAFPTRDKERILAAITKYSS 240
           RI+ VPLFHFYKDGVLLEAFPTRDK+RILAAI KYSS
Sbjct: 186 RIRAVPLFHFYKDGVLLEAFPTRDKDRILAAILKYSS 207

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TRL4_ARATH3.4e-6066.67Thioredoxin-like 4, chloroplastic OS=Arabidopsis thaliana GN=At1g07700 PE=2 SV=1[more]
TRL4_ORYSJ4.0e-5374.22Thioredoxin-like 4, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g056710... [more]
THIO_MOUSE7.2e-1036.84Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3[more]
THIO_RAT2.7e-0935.96Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2[more]
TRL2_ORYSJ6.1e-0930.19Thioredoxin-like 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g020010... [more]
Match NameE-valueIdentityDescription
A0A0A0LP39_CUCSA3.3e-8679.25Uncharacterized protein OS=Cucumis sativus GN=Csa_2G357300 PE=4 SV=1[more]
E0CPV6_VITVI1.2e-6463.38Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g10510 PE=4 SV=... [more]
I1K7Z7_SOYBN2.7e-6465.02Uncharacterized protein OS=Glycine max GN=GLYMA_06G039900 PE=4 SV=1[more]
K7KHY6_SOYBN1.0e-6361.75Uncharacterized protein OS=Glycine max GN=GLYMA_04G038900 PE=4 SV=1[more]
A0A0B2PA98_GLYSO1.0e-6361.75Thioredoxin-like 4, chloroplastic OS=Glycine soja GN=glysoja_019586 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G07700.31.9e-6166.67 Thioredoxin superfamily protein[more]
AT5G42980.13.4e-1034.55 thioredoxin 3[more]
AT4G26160.13.8e-0938.75 atypical CYS HIS rich thioredoxin 1[more]
AT4G29670.21.4e-0836.17 atypical CYS HIS rich thioredoxin 2[more]
AT3G51030.11.9e-0836.11 thioredoxin H-type 1[more]
Match NameE-valueIdentityDescription
gi|659087759|ref|XP_008444622.1|1.6e-8679.25PREDICTED: thioredoxin-like 4, chloroplastic [Cucumis melo][more]
gi|449466338|ref|XP_004150883.1|4.7e-8679.25PREDICTED: thioredoxin-like 4, chloroplastic [Cucumis sativus][more]
gi|225458613|ref|XP_002284743.1|1.7e-6463.38PREDICTED: thioredoxin-like 4, chloroplastic [Vitis vinifera][more]
gi|571458843|ref|XP_006581243.1|3.9e-6465.02PREDICTED: thioredoxin-like 4, chloroplastic [Glycine max][more]
gi|356510410|ref|XP_003523931.1|1.5e-6361.75PREDICTED: thioredoxin-like 4, chloroplastic isoform X1 [Glycine max][more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0045454cell redox homeostasis
GO:0006662glycerol ether metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0015035protein disulfide oxidoreductase activity
Vocabulary: INTERPRO
TermDefinition
IPR013766Thioredoxin_domain
IPR012336Thioredoxin-like_fold
IPR005746Thioredoxin
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0006662 glycerol ether metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0034599 cellular response to oxidative stress
cellular_component GO:0005623 cell
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005575 cellular_component
molecular_function GO:0015035 protein disulfide oxidoreductase activity
molecular_function GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
molecular_function GO:0047134 protein-disulfide reductase activity
molecular_function GO:0004791 thioredoxin-disulfide reductase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g05320.1Cp4.1LG07g05320.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005746ThioredoxinPANTHERPTHR10438THIOREDOXINcoord: 54..239
score: 1.8
IPR012336Thioredoxin-like foldGENE3DG3DSA:3.40.30.10coord: 127..237
score: 3.1
IPR012336Thioredoxin-like foldunknownSSF52833Thioredoxin-likecoord: 122..237
score: 1.62
IPR013766Thioredoxin domainPFAMPF00085Thioredoxincoord: 130..236
score: 4.4
IPR013766Thioredoxin domainPROFILEPS51352THIOREDOXIN_2coord: 100..239
score: 9
NoneNo IPR availablePANTHERPTHR10438:SF229THIOREDOXIN-LIKE 4, CHLOROPLASTICcoord: 54..239
score: 1.8

The following gene(s) are paralogous to this gene:

None