Cucsa.232940.2 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.232940.2
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Thioredoxin, putative
Location	scaffold01989 : 689844 .. 691682 (+)
Sequence length	1318

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGATAATGATCGAGTCGTGTCATTTTCTCGTTCGCAGCTGCTCCTCTGTTCTTCTTCCCGCTCGGAGGTAATCAACTGGTCCTTCATTTGTTGCTTTACCCCTTCAATTTTTCACCTTTCATTCTCTTAACAGTTACTTTTCATCCTCTTTCTGAATCGATAATCGAAATTTTCTCCTCCTTTAACATGATTAATGTTAAATAAGATTTATCATGAGTTTGAAACATTGTCTTGAATGCTACATCTGAATCTGATATATTGCTCAGTTTTATTAGAGCTTTCTGACTGAAGTTCATTCACTAAAGAACTCCCAAATCGGAGTTTtGGGTATATATATATATATATATATATATATGTTGCAATGCAAAGGCAGAACCAGAATGTACTGCAATGTAAAACTTTAATCAGTTTTGGATTAAACCCAAATGAGAAAATGGAGCCGAGAATCCCCATTTTGATTCCCCGCTGGCTTTCTTCGGAGAAAGAGCCCGTTCGATTGTCGATTACAAGACCCGAAGTTCCAAGAAACCAATTGTTATACAAGAGTAAAATGAGAGTTAATGCTGGAAATCAGGGGGAGTTGAGTGATGAGGATGATGATCTTTGCCCTGTAGACTGTGTGCGGGAATTCAAGACGGATGAAGAGTTCATTAAAATTCTAGACAAGGCGAAGGAAAACGGTGGTTTGGTAGTTGTGGACTTTTATCGAACATCTTGTGGAAGTTGCAAATATATAGAACAAGGGTTTGCAAAATTGTGCAAGGGGTCTGGCGATCAACAGGCACCGGTTATCTTCTTGAAGCATAATGTGAGTGTTTCATATTAGCCATGTTTTCTCGGGAAATTGACTTCCATTACAATCACTGACTGGTTATTATGCTTTGAATTTGATTGTGTGTTTTAGGTCATGGATGAATATGATGAACAATCTGAGGTTGCTGAACGGCTAAGGATCAAGGTAAGCTTGTTTTCTCTTCTTGATTGCCAAGTTGGGTTTGTGTTGAATTAGACTGAAGTTTTGACAAACTGTTCTTGGTCTCTTCGGAAACTTTCTGTTTGCTTTGAGATATTAAAATCTTCTTATTCTAATTATTGTAAGGTCCGATTTTAATTTTAATTTTtAATTTTTAATGATTTCAGTAATTTTTATTATTATTAGATTTTTGCTGCATTAAAAAACATAACTAATATAATATTTATTGTTGTTTCAAACATCATCAAGAAAGTATTAAGAAATGGTTAAATTACAAATTTTGTCATTTGAAGAAAATTAGTATTTAGTTTGAAAAGTTATGTTTAGTCCTTAACAATACCTCATGAATATTCATTATAATTTGATTTAGAGGTAGAAAACCATTAAAATTAGTGTTTGTTTGTGATTGAGTTAATTAAGTTCCTAAAATGTTAATGTTTATGATAAACAAGTTTTGTTTTtGtATTTTAGTTCACTAATGTTGAAATTTGATGATGGCATTGCAGACTGTGCCACTGTTCCACTTCTACAAAGATGGGGTCTTATTAGAAGCATTTCCTACAAGAGATAAAGAGAGGATCCTCACAGCCATAACCAAATATTCATCTTCTCCACTTCAAATTTAATTTGATCATTATTCTTGTGGCCTTGCACCTTTTGTAAAATAATAATACCAAACAAAACCACGAATCTGATACAAACCCCATCCAGCCCTTTATGTGACAATGTAAGATCTTGGGAGGAATCATATGCTTGATTATCATATTTTGTGCTCTGTAAGATCATAAATTAGAAGATGAGCCTCTTGTAGTTTGTGCTTTTGTTTAATCTCTTGTTTGAAATAGGTAGCAGCAGAAAGGACAA

mRNA sequence

GAAGATAATGATCGAGTCGTGTCATTTTCTCGTTCGCAGCTGCTCCTCTGTTCTTCTTCCCGCTCGGAGGTAATCAACTGGTCCTTCATTTGTTGCTTTACCCCTTCAATTTTTCACCTTTCATTCTCTTAACAGTTACTTTTCATCCTCTTTCTGAATCGATAATCGAAATTTTCTCCTCCTTTAACATGATTAATGTTAAATAAGATTTATCATGAGTTTGAAACATTGTCTTGAATGCTACATCTGAATCTGATATATTGCTCAGTTTTATTAGAGCTTTCTGACTGAAGTTCATTCACTAAAGAACTCCCAAATCGGAGTTTTGGGtatatatatatatatatatatatatatGTTGCAATGCAAAGGCAGAACCAGAATGTACTGCAATGTAAAACTTTAATCAGTTTTGGATTAAACCCAAATGAGAAAATGGAGCCGAGAATCCCCATTTTGATTCCCCGCTGGCTTTCTTCGGAGAAAGAGCCCGTTCGATTGTCGATTACAAGACCCGAAGTTCCAAGAAACCAATTGTTATACAAGAGTAAAATGAGAGTTAATGCTGGAAATCAGGGGGAGTTGAGTGATGAGGATGATGATCTTTGCCCTGTAGACTGTGTGCGGGAATTCAAGACGGATGAAGAGTTCATTAAAATTCTAGACAAGGCGAAGGAAAACGGTGGTTTGGTAGTTGTGGACTTTTATCGAACATCTTGTGGAAGTTGCAAATATATAGAACAAGGGTTTGCAAAATTGTGCAAGGGGTCTGGCGATCAACAGGCACCGGTTATCTTCTTGAAGCATAATGTGAGTGTTTCATATTAGCCATGTTTTCTCGGGAAATTGACTTCCATTACAATCACTGACTGGTTATTATGCTTTGAATTTGATTGTGTGTTTTAGGTCATGGATGAATATGATGAACAATCTGAGGTTGCTGAACGGCTAAGGATCAAGACTGTGCCACTGTTCCACTTCTACAAAGATGGGGTCTTATTAGAAGCATTTCCTACAAGAGATAAAGAGAGGATCCTCACAGCCATAACCAAATATTCATCTTCTCCACTTCAAATTTAATTTGATCATTATTCTTGTGGCCTTGCACCTTTTGTAAAATAATAATACCAAACAAAACCACGAATCTGATACAAACCCCATCCAGCCCTTTATGTGACAATGTAAGATCTTGGGAGGAATCATATGCTTGATTATCATATTTTGTGCTCTGTAAGATCATAAATTAGAAGATGAGCCTCTTGTAGTTTGTGCTTTTGTTTAATCTCTTGTTTGAAATAGGTAGCAGCAGAAAGGACAA

Coding sequence (CDS)

ATGCAAAGGCAGAACCAGAATGTACTGCAATGTAAAACTTTAATCAGTTTTGGATTAAACCCAAATGAGAAAATGGAGCCGAGAATCCCCATTTTGATTCCCCGCTGGCTTTCTTCGGAGAAAGAGCCCGTTCGATTGTCGATTACAAGACCCGAAGTTCCAAGAAACCAATTGTTATACAAGAGTAAAATGAGAGTTAATGCTGGAAATCAGGGGGAGTTGAGTGATGAGGATGATGATCTTTGCCCTGTAGACTGTGTGCGGGAATTCAAGACGGATGAAGAGTTCATTAAAATTCTAGACAAGGCGAAGGAAAACGGTGGTTTGGTAGTTGTGGACTTTTATCGAACATCTTGTGGAAGTTGCAAATATATAGAACAAGGGTTTGCAAAATTGTGCAAGGGGTCTGGCGATCAACAGGCACCGGTTATCTTCTTGAAGCATAATGTGAGTGTTTCATATTAG

Protein sequence

MQRQNQNVLQCKTLISFGLNPNEKMEPRIPILIPRWLSSEKEPVRLSITRPEVPRNQLLYKSKMRVNAGNQGELSDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPVIFLKHNVSVSY*

Homology

[Close]

BLAST of Cucsa.232940.2 vs. Swiss-Prot
Match: TRL4_ARATH (Thioredoxin-like 4, chloroplastic OS=Arabidopsis thaliana GN=At1g07700 PE=2 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.9e-32
Identity = 71/116 (61.21%), Postives = 85/116 (73.28%), Query Frame = 1


Query: 44  VRLSITRPEVPRNQLLYKSKMR-----VNAGNQGELSDEDDDLCPVDCVREFKTDEEFIK 103
           VRLS  R E   N  +  +  R     ++  N  ELSDE+DDLCPV+CV EFKTD+E + 
Sbjct: 39  VRLSFPRAESSINITMGCTLQRGIAKSLSQENLVELSDENDDLCPVECVTEFKTDDELLS 98

Query: 104 ILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPVIFLKHNVSVSY 155
           +L+K+KE   LVVVDFYRT+CGSCKYIEQGF+KLCK SGDQ+APVIFLKHNV   Y
Sbjct: 99  VLEKSKETNSLVVVDFYRTACGSCKYIEQGFSKLCKQSGDQEAPVIFLKHNVVDEY 154

[Close]

BLAST of Cucsa.232940.2 vs. Swiss-Prot
Match: TRL4_ORYSJ (Thioredoxin-like 4, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0567100 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.0e-26
Identity = 51/81 (62.96%), Postives = 65/81 (80.25%), Query Frame = 1


Query: 74  LSDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLC 133
           + +E+++ CPV+CV EFKT+EE  ++L++AK  G LVVVDF+R SCGSCKYIEQGF KLC
Sbjct: 72  VEEEEEEFCPVECVTEFKTEEELARVLERAKATGALVVVDFFRPSCGSCKYIEQGFMKLC 131

Query: 134 KGSGDQQAPVIFLKHNVSVSY 155
           KGSGD  + V+FLKHNV   Y
Sbjct: 132 KGSGDHGSSVVFLKHNVIDEY 152

[Close]

BLAST of Cucsa.232940.2 vs. TrEMBL
Match: A0A0A0LP39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G357300 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 7.0e-82
Identity = 151/154 (98.05%), Postives = 151/154 (98.05%), Query Frame = 1


Query: 1   MQRQNQNVLQCKTLISFGLNPNEKMEPRIPILIPRWLSSEKEPVRLSITRPEVPRNQLLY 60
           MQRQNQNVLQCKTLISFGLNPNEKMEPRIPILIPRWLSSEKEPVRLSITRPEVPRNQLLY
Sbjct: 1   MQRQNQNVLQCKTLISFGLNPNEKMEPRIPILIPRWLSSEKEPVRLSITRPEVPRNQLLY 60

Query: 61  KSKMRVNAGNQGELSDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCG 120
           KSKMRVNAGNQGELSDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCG
Sbjct: 61  KSKMRVNAGNQGELSDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCG 120

Query: 121 SCKYIEQGFAKLCKGSGDQQAPVIFLKHNVSVSY 155
           SCKYIEQGFAKLCKGSGDQQAPVIFLKHNV   Y
Sbjct: 121 SCKYIEQGFAKLCKGSGDQQAPVIFLKHNVMDEY 154

[Close]

BLAST of Cucsa.232940.2 vs. TrEMBL
Match: U5FNJ4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s02920g PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.0e-40
Identity = 96/163 (58.90%), Postives = 114/163 (69.94%), Query Frame = 1


Query: 4   QNQNVLQCKTLISFGLNPNEKMEPRIPILIPRWL---SSEKEPVRL----SITRP---EV 63
           Q QN+L  K    FG NP+ +++ RIP + P  L    +EK  +      SIT+      
Sbjct: 26  QKQNILYSKASFGFGRNPDRQLDCRIPCVAPSMLPCRGNEKSCLMKAKFPSITKYAGLNF 85

Query: 64  PRNQLLYKSKMRVNA---GNQGELSDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLV 123
           P+N +  +   R+ A    N GELSDEDDDLCPVDCVREFKTDEEF++IL+KAKE   LV
Sbjct: 86  PKNNVASRPG-RIKAVVDENPGELSDEDDDLCPVDCVREFKTDEEFLRILEKAKETDSLV 145

Query: 124 VVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPVIFLKHNVSVS 154
           VVDFYRTSCGSCKYIEQGFAKLCKGSGDQ+A V FLKHNVS+S
Sbjct: 146 VVDFYRTSCGSCKYIEQGFAKLCKGSGDQEAAVTFLKHNVSIS 187

[Close]

BLAST of Cucsa.232940.2 vs. TrEMBL
Match: A0A067KQ52_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04261 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 5.0e-40
Identity = 86/160 (53.75%), Postives = 108/160 (67.50%), Query Frame = 1


Query: 4   QNQNVLQCKTLISFGLNPNEKMEPRIPILIPRWLSSEKE--------PVRLSITRPEVPR 63
           Q QN+L        G NP+ K   RIP ++PR   + K         P+  ++    + +
Sbjct: 2   QKQNILYSNASFGLGSNPDRKCGSRIPHVVPRMRCNTKSCLVWTKIIPISKTVGLDFLKK 61

Query: 64  NQLLYKSKMR-VNAGNQGELSDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDF 123
           +      +++ V  GN GELSDED+DLCP DCVREFKTDEEF+KI++KAKE G LVVVDF
Sbjct: 62  SDTFQPGRIKGVADGNPGELSDEDEDLCPADCVREFKTDEEFLKIIEKAKETGSLVVVDF 121

Query: 124 YRTSCGSCKYIEQGFAKLCKGSGDQQAPVIFLKHNVSVSY 155
           YRTSCGSCKYIEQGFAKLC+G+GD++A VIFLKHNV   Y
Sbjct: 122 YRTSCGSCKYIEQGFAKLCRGAGDEEAAVIFLKHNVIDEY 161

[Close]

BLAST of Cucsa.232940.2 vs. TrEMBL
Match: U5FTV4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s02920g PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.1e-39
Identity = 95/164 (57.93%), Postives = 112/164 (68.29%), Query Frame = 1


Query: 4   QNQNVLQCKTLISFGLNPNEKMEPRIPILIPRWL---SSEKEPVRL----SITRP---EV 63
           Q QN+L  K    FG NP+ +++ RIP + P  L    +EK  +      SIT+      
Sbjct: 26  QKQNILYSKASFGFGRNPDRQLDCRIPCVAPSMLPCRGNEKSCLMKAKFPSITKYAGLNF 85

Query: 64  PRNQLLYKSKMRVNA---GNQGELSDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLV 123
           P+N +  +   R+ A    N GELSDEDDDLCPVDCVREFKTDEEF++IL+KAKE   LV
Sbjct: 86  PKNNVASRPG-RIKAVVDENPGELSDEDDDLCPVDCVREFKTDEEFLRILEKAKETDSLV 145

Query: 124 VVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPVIFLKHNVSVSY 155
           VVDFYRTSCGSCKYIEQGFAKLCKGSGDQ+A V FLKHNV   Y
Sbjct: 146 VVDFYRTSCGSCKYIEQGFAKLCKGSGDQEAAVTFLKHNVIDEY 188

[Close]

BLAST of Cucsa.232940.2 vs. TrEMBL
Match: U5FNX3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s02920g PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.1e-39
Identity = 95/164 (57.93%), Postives = 112/164 (68.29%), Query Frame = 1


Query: 4   QNQNVLQCKTLISFGLNPNEKMEPRIPILIPRWL---SSEKEPVRL----SITRP---EV 63
           Q QN+L  K    FG NP+ +++ RIP + P  L    +EK  +      SIT+      
Sbjct: 2   QKQNILYSKASFGFGRNPDRQLDCRIPCVAPSMLPCRGNEKSCLMKAKFPSITKYAGLNF 61

Query: 64  PRNQLLYKSKMRVNA---GNQGELSDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLV 123
           P+N +  +   R+ A    N GELSDEDDDLCPVDCVREFKTDEEF++IL+KAKE   LV
Sbjct: 62  PKNNVASRPG-RIKAVVDENPGELSDEDDDLCPVDCVREFKTDEEFLRILEKAKETDSLV 121

Query: 124 VVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPVIFLKHNVSVSY 155
           VVDFYRTSCGSCKYIEQGFAKLCKGSGDQ+A V FLKHNV   Y
Sbjct: 122 VVDFYRTSCGSCKYIEQGFAKLCKGSGDQEAAVTFLKHNVIDEY 164

[Close]

BLAST of Cucsa.232940.2 vs. TAIR10
Match: AT1G07700.3 (AT1G07700.3 Thioredoxin superfamily protein)

HSP 1 Score: 140.2 bits (352), Expect = 1.1e-33
Identity = 71/116 (61.21%), Postives = 85/116 (73.28%), Query Frame = 1


Query: 44  VRLSITRPEVPRNQLLYKSKMR-----VNAGNQGELSDEDDDLCPVDCVREFKTDEEFIK 103
           VRLS  R E   N  +  +  R     ++  N  ELSDE+DDLCPV+CV EFKTD+E + 
Sbjct: 52  VRLSFPRAESSINITMGCTLQRGIAKSLSQENLVELSDENDDLCPVECVTEFKTDDELLS 111

Query: 104 ILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPVIFLKHNVSVSY 155
           +L+K+KE   LVVVDFYRT+CGSCKYIEQGF+KLCK SGDQ+APVIFLKHNV   Y
Sbjct: 112 VLEKSKETNSLVVVDFYRTACGSCKYIEQGFSKLCKQSGDQEAPVIFLKHNVVDEY 167

[Close]

BLAST of Cucsa.232940.2 vs. NCBI nr
Match: gi|449466338|ref|XP_004150883.1| (PREDICTED: thioredoxin-like 4, chloroplastic [Cucumis sativus])

HSP 1 Score: 311.2 bits (796), Expect = 1.0e-81
Identity = 151/154 (98.05%), Postives = 151/154 (98.05%), Query Frame = 1


Query: 1   MQRQNQNVLQCKTLISFGLNPNEKMEPRIPILIPRWLSSEKEPVRLSITRPEVPRNQLLY 60
           MQRQNQNVLQCKTLISFGLNPNEKMEPRIPILIPRWLSSEKEPVRLSITRPEVPRNQLLY
Sbjct: 1   MQRQNQNVLQCKTLISFGLNPNEKMEPRIPILIPRWLSSEKEPVRLSITRPEVPRNQLLY 60

Query: 61  KSKMRVNAGNQGELSDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCG 120
           KSKMRVNAGNQGELSDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCG
Sbjct: 61  KSKMRVNAGNQGELSDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCG 120

Query: 121 SCKYIEQGFAKLCKGSGDQQAPVIFLKHNVSVSY 155
           SCKYIEQGFAKLCKGSGDQQAPVIFLKHNV   Y
Sbjct: 121 SCKYIEQGFAKLCKGSGDQQAPVIFLKHNVMDEY 154

[Close]

BLAST of Cucsa.232940.2 vs. NCBI nr
Match: gi|659087759|ref|XP_008444622.1| (PREDICTED: thioredoxin-like 4, chloroplastic [Cucumis melo])

HSP 1 Score: 300.8 bits (769), Expect = 1.4e-78
Identity = 145/154 (94.16%), Postives = 149/154 (96.75%), Query Frame = 1


Query: 1   MQRQNQNVLQCKTLISFGLNPNEKMEPRIPILIPRWLSSEKEPVRLSITRPEVPRNQLLY 60
           MQRQNQNVLQCKTLISFGL+PNEK+E RIPILIPRWLSSEKEPVRLSITRPEVPR+QLLY
Sbjct: 1   MQRQNQNVLQCKTLISFGLHPNEKLESRIPILIPRWLSSEKEPVRLSITRPEVPRHQLLY 60

Query: 61  KSKMRVNAGNQGELSDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCG 120
           KSKMRVNAGNQGE+ DEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCG
Sbjct: 61  KSKMRVNAGNQGEMGDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCG 120

Query: 121 SCKYIEQGFAKLCKGSGDQQAPVIFLKHNVSVSY 155
           SCKYIEQGFAKLCKGSGDQQAPVIFLKHNV   Y
Sbjct: 121 SCKYIEQGFAKLCKGSGDQQAPVIFLKHNVMDEY 154

[Close]

BLAST of Cucsa.232940.2 vs. NCBI nr
Match: gi|566202131|ref|XP_006374941.1| (hypothetical protein POPTR_0014s02920g [Populus trichocarpa])

HSP 1 Score: 174.5 bits (441), Expect = 1.5e-40
Identity = 96/163 (58.90%), Postives = 114/163 (69.94%), Query Frame = 1


Query: 4   QNQNVLQCKTLISFGLNPNEKMEPRIPILIPRWL---SSEKEPVRL----SITRP---EV 63
           Q QN+L  K    FG NP+ +++ RIP + P  L    +EK  +      SIT+      
Sbjct: 26  QKQNILYSKASFGFGRNPDRQLDCRIPCVAPSMLPCRGNEKSCLMKAKFPSITKYAGLNF 85

Query: 64  PRNQLLYKSKMRVNA---GNQGELSDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLV 123
           P+N +  +   R+ A    N GELSDEDDDLCPVDCVREFKTDEEF++IL+KAKE   LV
Sbjct: 86  PKNNVASRPG-RIKAVVDENPGELSDEDDDLCPVDCVREFKTDEEFLRILEKAKETDSLV 145

Query: 124 VVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPVIFLKHNVSVS 154
           VVDFYRTSCGSCKYIEQGFAKLCKGSGDQ+A V FLKHNVS+S
Sbjct: 146 VVDFYRTSCGSCKYIEQGFAKLCKGSGDQEAAVTFLKHNVSIS 187

[Close]

BLAST of Cucsa.232940.2 vs. NCBI nr
Match: gi|802592579|ref|XP_012071661.1| (PREDICTED: thioredoxin-like 4, chloroplastic [Jatropha curcas])

HSP 1 Score: 172.2 bits (435), Expect = 7.2e-40
Identity = 86/160 (53.75%), Postives = 108/160 (67.50%), Query Frame = 1


Query: 4   QNQNVLQCKTLISFGLNPNEKMEPRIPILIPRWLSSEKE--------PVRLSITRPEVPR 63
           Q QN+L        G NP+ K   RIP ++PR   + K         P+  ++    + +
Sbjct: 2   QKQNILYSNASFGLGSNPDRKCGSRIPHVVPRMRCNTKSCLVWTKIIPISKTVGLDFLKK 61

Query: 64  NQLLYKSKMR-VNAGNQGELSDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDF 123
           +      +++ V  GN GELSDED+DLCP DCVREFKTDEEF+KI++KAKE G LVVVDF
Sbjct: 62  SDTFQPGRIKGVADGNPGELSDEDEDLCPADCVREFKTDEEFLKIIEKAKETGSLVVVDF 121

Query: 124 YRTSCGSCKYIEQGFAKLCKGSGDQQAPVIFLKHNVSVSY 155
           YRTSCGSCKYIEQGFAKLC+G+GD++A VIFLKHNV   Y
Sbjct: 122 YRTSCGSCKYIEQGFAKLCRGAGDEEAAVIFLKHNVIDEY 161

[Close]

BLAST of Cucsa.232940.2 vs. NCBI nr
Match: gi|743787089|ref|XP_011029982.1| (PREDICTED: thioredoxin-like 4, chloroplastic isoform X1 [Populus euphratica])

HSP 1 Score: 171.4 bits (433), Expect = 1.2e-39
Identity = 92/163 (56.44%), Postives = 108/163 (66.26%), Query Frame = 1


Query: 4   QNQNVLQCKTLISFGLNPNEKMEPRIPILIPRWLS--SEKEPVRLSITRPEVPRNQLLYK 63
           Q QN+L  K    FG NP+ +++ RIP + P  L     K+   +    P + + + L  
Sbjct: 26  QKQNILYSKASFGFGRNPDRQLDCRIPCVAPSMLPRRGNKKSCLMKAKFPSITKYEGLNF 85

Query: 64  SKM-------RVNA---GNQGELSDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVV 123
            K        R+ A    N GELSDEDDDLCPVDCVREFKTDEEF++IL+KAKE   LVV
Sbjct: 86  PKNNDAWRPGRIKAVVDENPGELSDEDDDLCPVDCVREFKTDEEFLRILEKAKETDSLVV 145

Query: 124 VDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPVIFLKHNVSVSY 155
           VDFYRTSCGSCKYIEQGFAKLCKGSGDQ+A V FLKHNV   Y
Sbjct: 146 VDFYRTSCGSCKYIEQGFAKLCKGSGDQEAAVTFLKHNVIDEY 188

The following BLAST results are available for this feature:

BLAST of Cucsa.232940.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TRL4_ARATH	1.9e-32	61.21	Thioredoxin-like 4, chloroplastic OS=Arabidopsis thaliana GN=At1g07700 PE=2 SV=1	[more]
TRL4_ORYSJ	6.0e-26	62.96	Thioredoxin-like 4, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g056710...	[more]

BLAST of Cucsa.232940.2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LP39_CUCSA	7.0e-82	98.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G357300 PE=4 SV=1	[more]
U5FNJ4_POPTR	1.0e-40	58.90	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s02920g PE=4 SV=1	[more]
A0A067KQ52_JATCU	5.0e-40	53.75	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04261 PE=4 SV=1	[more]
U5FTV4_POPTR	1.1e-39	57.93	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s02920g PE=4 SV=1	[more]
U5FNX3_POPTR	1.1e-39	57.93	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s02920g PE=4 SV=1	[more]

BLAST of Cucsa.232940.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07700.3	1.1e-33	61.21	Thioredoxin superfamily protein	[more]

BLAST of Cucsa.232940.2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449466338\|ref\|XP_004150883.1\|	1.0e-81	98.05	PREDICTED: thioredoxin-like 4, chloroplastic [Cucumis sativus]	[more]
gi\|659087759\|ref\|XP_008444622.1\|	1.4e-78	94.16	PREDICTED: thioredoxin-like 4, chloroplastic [Cucumis melo]	[more]
gi\|566202131\|ref\|XP_006374941.1\|	1.5e-40	58.90	hypothetical protein POPTR_0014s02920g [Populus trichocarpa]	[more]
gi\|802592579\|ref\|XP_012071661.1\|	7.2e-40	53.75	PREDICTED: thioredoxin-like 4, chloroplastic [Jatropha curcas]	[more]
gi\|743787089\|ref\|XP_011029982.1\|	1.2e-39	56.44	PREDICTED: thioredoxin-like 4, chloroplastic isoform X1 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005746	Thioredoxin
IPR012336	Thioredoxin-like_fold
IPR013766	Thioredoxin_domain

Vocabulary: **Biological Process**
Term	Definition
GO:0006662	glycerol ether metabolic process
GO:0045454	cell redox homeostasis

Vocabulary: **Molecular Function**
Term	Definition
GO:0015035	protein disulfide oxidoreductase activity

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005623	cell
molecular_function	GO:0015035	protein disulfide oxidoreductase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.232940	Cucsa.232940	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.232940.2	Cucsa.232940.2-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.232940.2.five_prime_UTR.1	Cucsa.232940.2.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.232940.2.CDS.1	Cucsa.232940.2.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.232940.2.three_prime_UTR.1	Cucsa.232940.2.three_prime_UTR.1	three_prime_UTR
Cucsa.232940.2.three_prime_UTR.2	Cucsa.232940.2.three_prime_UTR.2	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005746	Thioredoxin	PANTHER	PTHR10438	THIOREDOXIN	coord: 23..150 score: 2.4
IPR012336	Thioredoxin-like fold	GENE3D	G3DSA:3.40.30.10		coord: 87..149 score: 2.
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 68..151 score: 3.61
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 92..149 score: 6.
None	No IPR available	PANTHER	PTHR10438:SF229	THIOREDOXIN-LIKE 4, CHLOROPLASTIC	coord: 23..150 score: 2.4