Cucsa.196300 (gene) Cucumber (Gy14) v1

NameCucsa.196300
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionCentromere X
Locationscaffold01357 : 50916 .. 52160 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGTGTGGCTTTGGGCTGGGCCTCGCTTAAGCCCAAAAAAaGATGCGTGGCGCGGGACAATGTGAAAGATGCTCAAACGGATGCATATAAAAGGGTAAAACTAGCGGCAATTCGAAAACAGATCAAAACGCGTGGTGAGGGAACACGTCGAAATTTGAAACTTAAAAGTTGCGTCTTACAGACTTGCACTCCCCAGTTTCGATTCATCATGGAAGAGACCGGATTTCATCCTGTAATTCTCTTATCTTCATTCAAGTTCAATTCATCGTTTGATTGTTCAAATAGTCTGCTACGTCTATGTTTTCCTTTCAATTTGGCGTTTATGTGTATAATTCACAGGATCTAATTCACGCCATTTTCAAGCTCGAGTGGAGCAGAAGATCACTTGGTTAGAACTTTGGATCACCCTCTCCTTCTGTCTATCTATCTGTTTTCAGTTCTTCGTTCTCTCTTTCCTGATCATTTCTTCATTTTCAGAGCGCGAGAAAAACGAGAATAATCCGGATGCTATGGATTGCGAGGTGGTTCCCTTTTCGTGAGTTTCTTGTGAAAATTTATTTTCAACTGCTATTGTTTGATATCTTTCGTGAAAATGTTTGTCATCGTTTTACGTTTTGATTTCACTGGCACCAGGTTTATCTTAGAATGCTCTTGGTACTTCTTGAGTTGATATGTAGTCTAGCGAATTTAACTAGAAATAAGTGATTATCTATTTTGTTGCAAATTTGGAGTAAGGCTTTTTCTCGACTAGACCAGTGGGGTTGATCTTCAGCGTACTTATCTTCGTCAGGTTGACGCTGGGGCTGGAACATCCAAGAAAAGCAGGCCGATGTCAGGTATCTTTAGTTTTtACTTCAACAACTTACTATTATTTCATTTTTAAATTACTGTTTCTCTTAGGAGTGTTATTTTCCATCGAGCCGCTGTTATTTGAATGATTACTGTCTACTGGGAGATGTAGAAACTATTTCTGACCTCGCTGTTTTAATTTTCCATGCAGCTAATGCAAATGCTCTTAAATTGAGCTCTAAACTTGTACAAATTTTTATCTCAGGTATCTGTGGTGAAACGTCAGATGGTTAGTTTAGTGTCTAATGTTTCCTTCTTCTTTTAGGTTAACTTTTCTATTTGTGCAGAGGCTGTGCAGCGCGCTGCAACAATTGCTGAAGCAGAAGGTATTAGCAGAATTGAACCCACTCATTTGGAGAGAGTTCTTCCGCAGTTACTACTGGATTTTTAA

mRNA sequence

ATGGAGAGTGTGGCTTTGGGCTGGGCCTCGCTTAAGCCCAAAAAAAGATGCGTGGCGCGGGACAATGTGAAAGATGCTCAAACGGATGCATATAAAAGGGATCTAATTCACGCCATTTTCAAGCTCGAGTGGAGCAGAAGATCACTTGAGCGCGAGAAAAACGAGAATAATCCGGATGCTATGGATTGCGAGGTGGTTGACGCTGGGGCTGGAACATCCAAGAAAAGCAGGCCGATGTCAGCTAATGCAAATGCTCTTAAATTGAGCTCTAAACTTGTACAAATTTTTATCTCAGAGGCTGTGCAGCGCGCTGCAACAATTGCTGAAGCAGAAGGTATTAGCAGAATTGAACCCACTCATTTGGAGAGAGTTCTTCCGCAGTTACTACTGGATTTTTAA

Coding sequence (CDS)

ATGGAGAGTGTGGCTTTGGGCTGGGCCTCGCTTAAGCCCAAAAAAaGATGCGTGGCGCGGGACAATGTGAAAGATGCTCAAACGGATGCATATAAAAGGGATCTAATTCACGCCATTTTCAAGCTCGAGTGGAGCAGAAGATCACTTGAGCGCGAGAAAAACGAGAATAATCCGGATGCTATGGATTGCGAGGTGGTTGACGCTGGGGCTGGAACATCCAAGAAAAGCAGGCCGATGTCAGCTAATGCAAATGCTCTTAAATTGAGCTCTAAACTTGTACAAATTTTTATCTCAGAGGCTGTGCAGCGCGCTGCAACAATTGCTGAAGCAGAAGGTATTAGCAGAATTGAACCCACTCATTTGGAGAGAGTTCTTCCGCAGTTACTACTGGATTTTTAA

Protein sequence

MESVALGWASLKPKKRCVARDNVKDAQTDAYKRDLIHAIFKLEWSRRSLEREKNENNPDAMDCEVVDAGAGTSKKSRPMSANANALKLSSKLVQIFISEAVQRAATIAEAEGISRIEPTHLERVLPQLLLDF*
BLAST of Cucsa.196300 vs. Swiss-Prot
Match: CENPX_CHICK (Centromere protein X OS=Gallus gallus GN=STRA13 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.9e-07
Identity = 25/51 (49.02%), Postives = 39/51 (76.47%), Query Frame = 1

Query: 82  NANALKLSSKLVQIFISEAVQRAATIAEAEGISRIEPTHLERVLPQLLLDF 133
           N +AL L ++L+++F+ EA  RAA  A+AE + +++  H+E+VLPQLLLDF
Sbjct: 29  NGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQLLLDF 79

BLAST of Cucsa.196300 vs. Swiss-Prot
Match: CENPX_BOVIN (Centromere protein X OS=Bos taurus GN=STRA13 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.6e-06
Identity = 25/58 (43.10%), Postives = 41/58 (70.69%), Query Frame = 1

Query: 75  KSRPMSANANALKLSSKLVQIFISEAVQRAATIAEAEGISRIEPTHLERVLPQLLLDF 133
           K +    + +AL+L ++L++IF+ EA  R+   A+AEG++ ++   LE+VLPQLLLDF
Sbjct: 22  KDKKTKVSGDALQLVAELLKIFVVEAAIRSVRQAQAEGLAHVDVEQLEKVLPQLLLDF 79

BLAST of Cucsa.196300 vs. TrEMBL
Match: A0A0A0LU58_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G002850 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.5e-56
Identity = 129/178 (72.47%), Postives = 129/178 (72.47%), Query Frame = 1

Query: 1   MESVALGWASLKPKKRCVARDNVKDAQTDAY----------------------------- 60
           MESVALGWASLKPKKRCVARDNVKDAQTDAY                             
Sbjct: 1   MESVALGWASLKPKKRCVARDNVKDAQTDAYKRVKLAAIRKQIKTRGEGTRRNLKLKSCV 60

Query: 61  -----------------KRDLIHAIFKLEWSRRSLEREKNENNPDAMDCEVVDAGAGTSK 120
                              DLIHAIFKLEWSRRSLEREKNENNPDAMDCEV DAGAGTSK
Sbjct: 61  LQTCTPQFRFIMEETGFHPDLIHAIFKLEWSRRSLEREKNENNPDAMDCEV-DAGAGTSK 120

Query: 121 KSRPMSANANALKLSSKLVQIFISEAVQRAATIAEAEGISRIEPTHLERVLPQLLLDF 133
           KSRPMSANANALKLSSKLVQIFISEAVQRAATIAEAEGISRIEPTHLERVLPQLLLDF
Sbjct: 121 KSRPMSANANALKLSSKLVQIFISEAVQRAATIAEAEGISRIEPTHLERVLPQLLLDF 177

BLAST of Cucsa.196300 vs. TrEMBL
Match: A0A067K7I4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11379 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 5.1e-33
Identity = 77/108 (71.30%), Postives = 90/108 (83.33%), Query Frame = 1

Query: 25  DAQTDAYKRDLIHAIFKLEWSRRSLEREKNENNPDAMDCEVVDAGAGTSKKSRPMSANAN 84
           D + D +  DL+HAIFKL WS+R+LEREKNE   DAMDCEV   G GTSKK RP SAN+N
Sbjct: 55  DMEDDTFDPDLVHAIFKLVWSKRALEREKNEVT-DAMDCEV---GVGTSKKIRPTSANSN 114

Query: 85  ALKLSSKLVQIFISEAVQRAATIAEAEGISRIEPTHLERVLPQLLLDF 133
           ALKLS +L+++FISEAVQRAATIAEAEG+ +IE THLER+LPQLLLDF
Sbjct: 115 ALKLSCELLRVFISEAVQRAATIAEAEGVEKIEATHLERILPQLLLDF 158

BLAST of Cucsa.196300 vs. TrEMBL
Match: A0A067K7I4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11379 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.2e-04
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 1

Query: 27 QTDAYKRDLIHAIFKLEWSRRSLEREKNENNPDAMDCE 65
          + D +  DL+HAIFKL WS+R+LEREKNE   DAMDCE
Sbjct: 2  EDDTFDPDLVHAIFKLVWSKRALEREKNEVT-DAMDCE 38


HSP 2 Score: 137.9 bits (346), Expect = 9.1e-30
Identity = 72/108 (66.67%), Postives = 87/108 (80.56%), Query Frame = 1

Query: 25  DAQTDAYKRDLIHAIFKLEWSRRSLEREKNENNPDAMDCEVVDAGAGTSKKSRPMSANAN 84
           D     +  DLIHAIFKL WSR +LEREKNE   D ++CEV   GA TSKK+RP SANAN
Sbjct: 76  DNANTRFDPDLIHAIFKLVWSRTALEREKNEG-ADPLECEV---GAATSKKNRPTSANAN 135

Query: 85  ALKLSSKLVQIFISEAVQRAATIAEAEGISRIEPTHLERVLPQLLLDF 133
           ALKLS +L+++F+ EAV+RAATIAEAEG+++IE THLER+LPQLLLDF
Sbjct: 136 ALKLSCELLRVFVIEAVERAATIAEAEGVNKIEATHLERILPQLLLDF 179

BLAST of Cucsa.196300 vs. TrEMBL
Match: A0A067D3Z1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033891mg PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-29
Identity = 72/104 (69.23%), Postives = 87/104 (83.65%), Query Frame = 1

Query: 31  YKRDLIHAIFKLEWSRRSLEREKNENNPDAMDCEVV--DAGAGTSKKSRPMSANANALKL 90
           +  DLIHAIFK  W+RRSLERE+N    DAM+ E +   AGAGTSKK+RP SANANALKL
Sbjct: 7   FDSDLIHAIFKHIWTRRSLERERN-GGTDAMESEFLLHQAGAGTSKKNRPTSANANALKL 66

Query: 91  SSKLVQIFISEAVQRAATIAEAEGISRIEPTHLERVLPQLLLDF 133
           S +L+++F++EAVQRAA IAEAEG+S+IE THLER+LPQLLLDF
Sbjct: 67  SCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERILPQLLLDF 109

BLAST of Cucsa.196300 vs. TrEMBL
Match: V4TNJ1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022963mg PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-29
Identity = 72/104 (69.23%), Postives = 87/104 (83.65%), Query Frame = 1

Query: 31  YKRDLIHAIFKLEWSRRSLEREKNENNPDAMDCEVV--DAGAGTSKKSRPMSANANALKL 90
           +  DLIHAIFK  W+RRSLERE+N    DAM+ E +   AGAGTSKK+RP SANANALKL
Sbjct: 7   FDSDLIHAIFKHIWTRRSLERERN-GGTDAMESEFLLDQAGAGTSKKNRPTSANANALKL 66

Query: 91  SSKLVQIFISEAVQRAATIAEAEGISRIEPTHLERVLPQLLLDF 133
           S +L+++F++EAVQRAA IAEAEG+S+IE THLER+LPQLLLDF
Sbjct: 67  SCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERILPQLLLDF 109

BLAST of Cucsa.196300 vs. TAIR10
Match: AT1G78790.1 (AT1G78790.1 unknown protein)

HSP 1 Score: 119.4 bits (298), Expect = 1.7e-27
Identity = 63/104 (60.58%), Postives = 79/104 (75.96%), Query Frame = 1

Query: 29  DAYKRDLIHAIFKLEWSRRSLEREKNENNPDAMDCEVVDAGAGTSKKSRPMSANANALKL 88
           + +  DLIHAIFK  W+RR  ERE++    DA+D    +   GT+KK+R  SANANALKL
Sbjct: 5   NTFDSDLIHAIFKHIWARRFRERERS----DAIDATEAEVALGTTKKNRLASANANALKL 64

Query: 89  SSKLVQIFISEAVQRAATIAEAEGISRIEPTHLERVLPQLLLDF 133
           S +L++ F+SEAVQRAA IAEAEG+ +IE THLER+LPQLLLDF
Sbjct: 65  SCELLKSFVSEAVQRAAIIAEAEGMEKIEATHLERILPQLLLDF 104

BLAST of Cucsa.196300 vs. NCBI nr
Match: gi|700208420|gb|KGN63516.1| (hypothetical protein Csa_1G002850 [Cucumis sativus])

HSP 1 Score: 226.9 bits (577), Expect = 2.1e-56
Identity = 129/178 (72.47%), Postives = 129/178 (72.47%), Query Frame = 1

Query: 1   MESVALGWASLKPKKRCVARDNVKDAQTDAY----------------------------- 60
           MESVALGWASLKPKKRCVARDNVKDAQTDAY                             
Sbjct: 1   MESVALGWASLKPKKRCVARDNVKDAQTDAYKRVKLAAIRKQIKTRGEGTRRNLKLKSCV 60

Query: 61  -----------------KRDLIHAIFKLEWSRRSLEREKNENNPDAMDCEVVDAGAGTSK 120
                              DLIHAIFKLEWSRRSLEREKNENNPDAMDCEV DAGAGTSK
Sbjct: 61  LQTCTPQFRFIMEETGFHPDLIHAIFKLEWSRRSLEREKNENNPDAMDCEV-DAGAGTSK 120

Query: 121 KSRPMSANANALKLSSKLVQIFISEAVQRAATIAEAEGISRIEPTHLERVLPQLLLDF 133
           KSRPMSANANALKLSSKLVQIFISEAVQRAATIAEAEGISRIEPTHLERVLPQLLLDF
Sbjct: 121 KSRPMSANANALKLSSKLVQIFISEAVQRAATIAEAEGISRIEPTHLERVLPQLLLDF 177

BLAST of Cucsa.196300 vs. NCBI nr
Match: gi|449440604|ref|XP_004138074.1| (PREDICTED: centromere protein X [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 1.4e-44
Identity = 98/99 (98.99%), Postives = 98/99 (98.99%), Query Frame = 1

Query: 34  DLIHAIFKLEWSRRSLEREKNENNPDAMDCEVVDAGAGTSKKSRPMSANANALKLSSKLV 93
           DLIHAIFKLEWSRRSLEREKNENNPDAMDCEV DAGAGTSKKSRPMSANANALKLSSKLV
Sbjct: 9   DLIHAIFKLEWSRRSLEREKNENNPDAMDCEV-DAGAGTSKKSRPMSANANALKLSSKLV 68

Query: 94  QIFISEAVQRAATIAEAEGISRIEPTHLERVLPQLLLDF 133
           QIFISEAVQRAATIAEAEGISRIEPTHLERVLPQLLLDF
Sbjct: 69  QIFISEAVQRAATIAEAEGISRIEPTHLERVLPQLLLDF 106

BLAST of Cucsa.196300 vs. NCBI nr
Match: gi|659129022|ref|XP_008464489.1| (PREDICTED: centromere protein X isoform X2 [Cucumis melo])

HSP 1 Score: 179.1 bits (453), Expect = 5.1e-42
Identity = 96/99 (96.97%), Postives = 96/99 (96.97%), Query Frame = 1

Query: 34  DLIHAIFKLEWSRRSLEREKNENNPDAMDCEVVDAGAGTSKKSRPMSANANALKLSSKLV 93
           DLIHAIFKLEWSRRSLEREKNEN PDAMDCEV DAGAGTSKKSRPMSANANALKLSSKLV
Sbjct: 9   DLIHAIFKLEWSRRSLEREKNEN-PDAMDCEV-DAGAGTSKKSRPMSANANALKLSSKLV 68

Query: 94  QIFISEAVQRAATIAEAEGISRIEPTHLERVLPQLLLDF 133
           QIFISEAVQRAATIAEAEGI RIEPTHLERVLPQLLLDF
Sbjct: 69  QIFISEAVQRAATIAEAEGIGRIEPTHLERVLPQLLLDF 105

BLAST of Cucsa.196300 vs. NCBI nr
Match: gi|659129020|ref|XP_008464488.1| (PREDICTED: centromere protein X isoform X1 [Cucumis melo])

HSP 1 Score: 166.8 bits (421), Expect = 2.6e-38
Identity = 92/100 (92.00%), Postives = 93/100 (93.00%), Query Frame = 1

Query: 34  DLIHAIFKLEWSRRSLEREKNENNPDAMDCEVVDAGAGTSKKSRPMSANANALKLSSKLV 93
           DLIHAIFKLEWSRRSLEREKNEN PDAMDCEV DAGAGTSKKSRPMSANANALKLSSKLV
Sbjct: 9   DLIHAIFKLEWSRRSLEREKNEN-PDAMDCEV-DAGAGTSKKSRPMSANANALKLSSKLV 68

Query: 94  QIFI-SEAVQRAATIAEAEGISRIEPTHLERVLPQLLLDF 133
              I +EAVQRAATIAEAEGI RIEPTHLERVLPQLLLDF
Sbjct: 69  NFSICAEAVQRAATIAEAEGIGRIEPTHLERVLPQLLLDF 106

BLAST of Cucsa.196300 vs. NCBI nr
Match: gi|643720739|gb|KDP31003.1| (hypothetical protein JCGZ_11379 [Jatropha curcas])

HSP 1 Score: 148.7 bits (374), Expect = 7.4e-33
Identity = 77/108 (71.30%), Postives = 90/108 (83.33%), Query Frame = 1

Query: 25  DAQTDAYKRDLIHAIFKLEWSRRSLEREKNENNPDAMDCEVVDAGAGTSKKSRPMSANAN 84
           D + D +  DL+HAIFKL WS+R+LEREKNE   DAMDCEV   G GTSKK RP SAN+N
Sbjct: 55  DMEDDTFDPDLVHAIFKLVWSKRALEREKNEVT-DAMDCEV---GVGTSKKIRPTSANSN 114

Query: 85  ALKLSSKLVQIFISEAVQRAATIAEAEGISRIEPTHLERVLPQLLLDF 133
           ALKLS +L+++FISEAVQRAATIAEAEG+ +IE THLER+LPQLLLDF
Sbjct: 115 ALKLSCELLRVFISEAVQRAATIAEAEGVEKIEATHLERILPQLLLDF 158

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CENPX_CHICK6.9e-0749.02Centromere protein X OS=Gallus gallus GN=STRA13 PE=1 SV=1[more]
CENPX_BOVIN2.6e-0643.10Centromere protein X OS=Bos taurus GN=STRA13 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LU58_CUCSA1.5e-5672.47Uncharacterized protein OS=Cucumis sativus GN=Csa_1G002850 PE=4 SV=1[more]
A0A067K7I4_JATCU5.1e-3371.30Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11379 PE=4 SV=1[more]
A0A067K7I4_JATCU2.2e-0465.79Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11379 PE=4 SV=1[more]
A0A067D3Z1_CITSI1.2e-2969.23Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033891mg PE=4 SV=1[more]
V4TNJ1_9ROSI1.2e-2969.23Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022963mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G78790.11.7e-2760.58 unknown protein[more]
Match NameE-valueIdentityDescription
gi|700208420|gb|KGN63516.1|2.1e-5672.47hypothetical protein Csa_1G002850 [Cucumis sativus][more]
gi|449440604|ref|XP_004138074.1|1.4e-4498.99PREDICTED: centromere protein X [Cucumis sativus][more]
gi|659129022|ref|XP_008464489.1|5.1e-4296.97PREDICTED: centromere protein X isoform X2 [Cucumis melo][more]
gi|659129020|ref|XP_008464488.1|2.6e-3892.00PREDICTED: centromere protein X isoform X1 [Cucumis melo][more]
gi|643720739|gb|KDP31003.1|7.4e-3371.30hypothetical protein JCGZ_11379 [Jatropha curcas][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018552CENP-X
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0051382kinetochore assembly
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
biological_process GO:0051382 kinetochore assembly
biological_process GO:0006661 phosphatidylinositol biosynthetic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.196300.1Cucsa.196300.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018552Centromere protein XPFAMPF09415CENP-Xcoord: 79..132
score: 1.9
NoneNo IPR availablePANTHERPTHR28680FAMILY NOT NAMEDcoord: 74..132
score: 2.6E-27coord: 32..44
score: 2.6