Cla019243 (gene) Watermelon (97103) v1

Overview
NameCla019243
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionCentromere protein X (AHRD V1 *-*- CENPX_BOVIN); contains Interpro domain(s) IPR018552 Protein of unknown function DUF2008
LocationChr6 : 26344322 .. 26345114 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTATGGATTGTGAGGTGGTTCCCCTTCCCTGAGTTTCTCGTGAAAATTTCTTTTCAATCGCTATTGCTTTCTCTCGTGAAAATGTCTGTCATCGTTTTGCGTTTCGATTTTACTGGTACTTAGGTTAATCTCAGACTGCTCTTGCTAGTTCTGAAGTTCTAACGATTCCACTAAATTTGTGCACATTTCTAATATCAAACATATAAACATGGCAGAAGTATATATGAAAAGTTGATATGTAGTCTAGCGAATTTACCTACAAATCAGTGATTATCTATCTTCTCGCAAACTTGGAGTAAAGCTTCTTTCTCGTCTAGACCAGTGGAGTTGATCTTTAGCTCACAAATTTTCTTCAGGTTGACGCTGGAACATCCAAGAAGAGCAGGCCAATGTCAGGTATCATTAGTTTTTACTTCAACAGCTTACTATTATTTCATTTTTAAATTACAGTTTCTATCAAGCGTGCTATTTCTATCGAGCTCGTGTTCTTTGAATGGTTAACATCTATCGGGAGATGCAGAACCATTTCTGACGTCGCTATTTCCGTGCAGCCAATGCAAATGCTCTTAAATTGAGCTCTAAACTTGTACAAATTTTTATTTCAGGTACCTATTGGGAAACGTTAGATGCTTAATTTGGTGTTAAGGTTTCCTTCTTCTTTTAGGTTAACTTTTCTATCTGTGCAGAGGCTGTGCAGCGTGCTGCAACAATTGCTGAAGCAGAAGGTATTAATAGAATTGAAGCCACTCATTTGGAGAGAATTCTTCCGCAATTATTACTGGACTTTTGA

mRNA sequence

ATGCTATGGATTGTGAGGTGGTTCCCCTTCCCTGAGTTTCTCGTGAAAATTTCTTTTCAATCGCTATTGCTTTCTCTCGTGAAAATGTCTGTCATCGTTTTGCGTTTCGATTTTACTGCCAATGCAAATGCTCTTAAATTGAGCTCTAAACTTGTACAAATTTTTATTTCAGAGGCTGTGCAGCGTGCTGCAACAATTGCTGAAGCAGAAGGTATTAATAGAATTGAAGCCACTCATTTGGAGAGAATTCTTCCGCAATTATTACTGGACTTTTGA

Coding sequence (CDS)

ATGCTATGGATTGTGAGGTGGTTCCCCTTCCCTGAGTTTCTCGTGAAAATTTCTTTTCAATCGCTATTGCTTTCTCTCGTGAAAATGTCTGTCATCGTTTTGCGTTTCGATTTTACTGCCAATGCAAATGCTCTTAAATTGAGCTCTAAACTTGTACAAATTTTTATTTCAGAGGCTGTGCAGCGTGCTGCAACAATTGCTGAAGCAGAAGGTATTAATAGAATTGAAGCCACTCATTTGGAGAGAATTCTTCCGCAATTATTACTGGACTTTTGA

Protein sequence

MLWIVRWFPFPEFLVKISFQSLLLSLVKMSVIVLRFDFTANANALKLSSKLVQIFISEAVQRAATIAEAEGINRIEATHLERILPQLLLDF
Homology
[Close]
BLAST of Cla019243 vs. Swiss-Prot
Match: CENPX_CHICK (Centromere protein X OS=Gallus gallus GN=STRA13 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.6e-07
Identity = 24/51 (47.06%), Postives = 37/51 (72.55%), Query Frame = 1 

Query: 41 NANALKLSSKLVQIFISEAVQRAATIAEAEGINRIEATHLERILPQLLLDF 92
          N +AL L ++L+++F+ EA  RAA  A+AE + +++  H+E++LPQLLLDF
Sbjct: 29 NGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQLLLDF 79

[Close]
BLAST of Cla019243 vs. TrEMBL
Match: A0A0A0LU58_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G002850 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.0e-17
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 1 

Query: 39  TANANALKLSSKLVQIFISEAVQRAATIAEAEGINRIEATHLERILPQLLLDF 92
           +ANANALKLSSKLVQIFISEAVQRAATIAEAEGI+RIE THLER+LPQLLLDF
Sbjct: 125 SANANALKLSSKLVQIFISEAVQRAATIAEAEGISRIEPTHLERVLPQLLLDF 177

[Close]
BLAST of Cla019243 vs. TrEMBL
Match: A0A067K7I4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11379 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 9.6e-15
Identity = 43/53 (81.13%), Postives = 51/53 (96.23%), Query Frame = 1 

Query: 39  TANANALKLSSKLVQIFISEAVQRAATIAEAEGINRIEATHLERILPQLLLDF 92
           +AN+NALKLS +L+++FISEAVQRAATIAEAEG+ +IEATHLERILPQLLLDF
Sbjct: 106 SANSNALKLSCELLRVFISEAVQRAATIAEAEGVEKIEATHLERILPQLLLDF 158

[Close]
BLAST of Cla019243 vs. TrEMBL
Match: D7SHE7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g09720 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-14
Identity = 42/53 (79.25%), Postives = 51/53 (96.23%), Query Frame = 1 

Query: 39  TANANALKLSSKLVQIFISEAVQRAATIAEAEGINRIEATHLERILPQLLLDF 92
           +ANANALKLS +L+++F+ EAV+RAATIAEAEG+N+IEATHLERILPQLLLDF
Sbjct: 127 SANANALKLSCELLRVFVIEAVERAATIAEAEGVNKIEATHLERILPQLLLDF 179

[Close]
BLAST of Cla019243 vs. TrEMBL
Match: M1B872_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400015227 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.1e-14
Identity = 46/67 (68.66%), Postives = 59/67 (88.06%), Query Frame = 1 

Query: 25 SLVKMSVIVLRFDFTANANALKLSSKLVQIFISEAVQRAATIAEAEGINRIEATHLERIL 84
          S V +SV++++    ANANALKLSS+L+++F++EA+QRAATIAEAEG  +IEATHLERIL
Sbjct: 5  SHVCVSVLMIK----ANANALKLSSELLRVFVAEAIQRAATIAEAEGSVKIEATHLERIL 64

Query: 85 PQLLLDF 92
          PQLLLDF
Sbjct: 65 PQLLLDF 67

[Close]
BLAST of Cla019243 vs. TrEMBL
Match: A0A067D3Z1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033891mg PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.6e-14
Identity = 41/53 (77.36%), Postives = 51/53 (96.23%), Query Frame = 1 

Query: 39  TANANALKLSSKLVQIFISEAVQRAATIAEAEGINRIEATHLERILPQLLLDF 92
           +ANANALKLS +L+++F++EAVQRAA IAEAEG+++IEATHLERILPQLLLDF
Sbjct: 57  SANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERILPQLLLDF 109

[Close]
BLAST of Cla019243 vs. NCBI nr
Match: gi|449440604|ref|XP_004138074.1| (PREDICTED: centromere protein X [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 8.6e-17
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 1 

Query: 39  TANANALKLSSKLVQIFISEAVQRAATIAEAEGINRIEATHLERILPQLLLDF 92
           +ANANALKLSSKLVQIFISEAVQRAATIAEAEGI+RIE THLER+LPQLLLDF
Sbjct: 54  SANANALKLSSKLVQIFISEAVQRAATIAEAEGISRIEPTHLERVLPQLLLDF 106

[Close]
BLAST of Cla019243 vs. NCBI nr
Match: gi|700208420|gb|KGN63516.1| (hypothetical protein Csa_1G002850 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 8.6e-17
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 1 

Query: 39  TANANALKLSSKLVQIFISEAVQRAATIAEAEGINRIEATHLERILPQLLLDF 92
           +ANANALKLSSKLVQIFISEAVQRAATIAEAEGI+RIE THLER+LPQLLLDF
Sbjct: 125 SANANALKLSSKLVQIFISEAVQRAATIAEAEGISRIEPTHLERVLPQLLLDF 177

[Close]
BLAST of Cla019243 vs. NCBI nr
Match: gi|659129022|ref|XP_008464489.1| (PREDICTED: centromere protein X isoform X2 [Cucumis melo])

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-16
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 1 

Query: 39  TANANALKLSSKLVQIFISEAVQRAATIAEAEGINRIEATHLERILPQLLLDF 92
           +ANANALKLSSKLVQIFISEAVQRAATIAEAEGI RIE THLER+LPQLLLDF
Sbjct: 53  SANANALKLSSKLVQIFISEAVQRAATIAEAEGIGRIEPTHLERVLPQLLLDF 105

[Close]
BLAST of Cla019243 vs. NCBI nr
Match: gi|719984084|ref|XP_010250960.1| (PREDICTED: centromere protein X isoform X1 [Nelumbo nucifera])

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-15
Identity = 45/53 (84.91%), Postives = 51/53 (96.23%), Query Frame = 1 

Query: 39  TANANALKLSSKLVQIFISEAVQRAATIAEAEGINRIEATHLERILPQLLLDF 92
           TANANALKLS +LV++FI+EAVQRAATIAEAEG+N+IE THLERILPQLLLDF
Sbjct: 50  TANANALKLSCELVRVFITEAVQRAATIAEAEGVNKIEPTHLERILPQLLLDF 102

[Close]
BLAST of Cla019243 vs. NCBI nr
Match: gi|1000984509|ref|XP_015578659.1| (PREDICTED: centromere protein X isoform X2 [Ricinus communis])

HSP 1 Score: 87.8 bits (216), Expect = 1.1e-14
Identity = 43/53 (81.13%), Postives = 52/53 (98.11%), Query Frame = 1 

Query: 39  TANANALKLSSKLVQIFISEAVQRAATIAEAEGINRIEATHLERILPQLLLDF 92
           +AN+NALKLS +L+++FISEAVQRAATIAEAEG+++IEATHLERILPQLLLDF
Sbjct: 50  SANSNALKLSCELLRVFISEAVQRAATIAEAEGVSKIEATHLERILPQLLLDF 102

The following BLAST results are available for this feature:
BLAST of Cla019243 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CENPX_CHICK3.6e-0747.06Centromere protein X OS=Gallus gallus GN=STRA13 PE=1 SV=1[more]
BLAST of Cla019243 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LU58_CUCSA6.0e-1792.45Uncharacterized protein OS=Cucumis sativus GN=Csa_1G002850 PE=4 SV=1[more]
A0A067K7I4_JATCU9.6e-1581.13Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11379 PE=4 SV=1[more]
D7SHE7_VITVI1.3e-1479.25Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g09720 PE=4 SV=... [more]
M1B872_SOLTU2.1e-1468.66Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400015227 PE=4 SV=1[more]
A0A067D3Z1_CITSI3.6e-1477.36Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033891mg PE=4 SV=1[more]
BLAST of Cla019243 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449440604|ref|XP_004138074.1|8.6e-1792.45PREDICTED: centromere protein X [Cucumis sativus][more]
gi|700208420|gb|KGN63516.1|8.6e-1792.45hypothetical protein Csa_1G002850 [Cucumis sativus][more]
gi|659129022|ref|XP_008464489.1|1.1e-1692.45PREDICTED: centromere protein X isoform X2 [Cucumis melo][more]
gi|719984084|ref|XP_010250960.1|1.6e-1584.91PREDICTED: centromere protein X isoform X1 [Nelumbo nucifera][more]
gi|1000984509|ref|XP_015578659.1|1.1e-1481.13PREDICTED: centromere protein X isoform X2 [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018552CENP-X
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0051382kinetochore assembly
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
biological_process GO:0051382 kinetochore assembly
biological_process GO:0006661 phosphatidylinositol biosynthetic process
biological_process GO:0031297 replication fork processing
biological_process GO:0000712 resolution of meiotic recombination intermediates
cellular_component GO:0005575 cellular_component
cellular_component GO:0071821 FANCM-MHF complex
cellular_component GO:0043240 Fanconi anaemia nuclear complex
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
molecular_function GO:0003690 double-stranded DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla019243Cla019243.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018552Centromere protein XPFAMPF09415CENP-Xcoord: 41..91
score: 2.8
NoneNo IPR availablePANTHERPTHR28680FAMILY NOT NAMEDcoord: 39..91
score: 4.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla019243Cla97C06G127260Watermelon (97103) v2wmwmbB406
Cla019243Csa1G002850Cucumber (Chinese Long) v2cuwmB094
Cla019243ClCG06G017550Watermelon (Charleston Gray)wcgwmB344
Cla019243CSPI01G00850Wild cucumber (PI 183967)cpiwmB099
Cla019243Cucsa.196300Cucumber (Gy14) v1cgywmB390
Cla019243CmaCh10G000810Cucurbita maxima (Rimu)cmawmB072
Cla019243CmoCh10G000820Cucurbita moschata (Rifu)cmowmB064
Cla019243Lsi06G016080Bottle gourd (USVL1VR-Ls)lsiwmB414
Cla019243Cp4.1LG18g08910Cucurbita pepo (Zucchini)cpewmB373
Cla019243CsGy1G000890Cucumber (Gy14) v2cgybwmB094
Cla019243MELO3C026242.2Melon (DHL92) v3.6.1medwmB283
Cla019243Carg10304Silver-seed gourdcarwmB0356
Cla019243CsaV3_1G000900Cucumber (Chinese Long) v3cucwmB105
Cla019243Bhi02G000439Wax gourdwgowmB686
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla019243Silver-seed gourdcarwmB0363
Cla019243Silver-seed gourdcarwmB0437
Cla019243Silver-seed gourdcarwmB0624
Cla019243Silver-seed gourdcarwmB1047
Cla019243Cucumber (Chinese Long) v3cucwmB289
Cla019243Watermelon (97103) v2wmwmbB401
Cla019243Watermelon (97103) v2wmwmbB418
Cla019243Watermelon (97103) v1wmwmB036
Cla019243Watermelon (97103) v1wmwmB057
Cla019243Cucurbita maxima (Rimu)cmawmB144
Cla019243Cucurbita moschata (Rifu)cmowmB128
Cla019243Cucurbita moschata (Rifu)cmowmB129
Cla019243Melon (DHL92) v3.5.1mewmB289
Cla019243Watermelon (Charleston Gray)wcgwmB043
Cla019243Watermelon (Charleston Gray)wcgwmB310
Cla019243Watermelon (Charleston Gray)wcgwmB428
Cla019243Cucumber (Chinese Long) v2cuwmB281
Cla019243Cucurbita pepo (Zucchini)cpewmB679
Cla019243Bottle gourd (USVL1VR-Ls)lsiwmB498
Cla019243Cucumber (Gy14) v2cgybwmB263