Carg10304 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg10304
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Centromere protein x
Location	Cucurbita_argyrosperma_scaffold_047 : 325727 .. 327929 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGCTCTCGCAGTCGCTAGTCTCGCTCGCCATGGAAGAGAGCACATTCGATCCTGTAATCTTTCATCTTCGAGTTTGATCGTTTTCATTGAAGTTTTATTCGTCGATTGTTTGTTCTCTTAAATGTCTGCTACGTGTATGCTTTCCATTCAACTAGGTGTTTGTTTGTATATAATTGACAGGATCTGATTCACGCCATCTTCAAGCTTGAGTGGAGCAGAAGATCACTTGGTTGGACTTCGGATCGCTCTCTCCTTCCGTCTAGTTTTTATTTTCTTTCAATTTCTAGTTATCTTTGTTTCCTCTTCTTTCTGATAATTTCTTCATTTTCCGTTTTGGTGCTCGCATTTCTTCAGAGCGCGAGAAAAACGAGAGCTCGGATGCTATGGATTGTGAGGTGATTTCCTTTCCCGGAGTTTATTGTGAAAATTTCTGTTTAACCGCTATTATTTTCTTCCGTGAAAATGTTTGTCGTCGTTTTGGTTTTCGATGTACTGGTACATAGGTAAATCTTAGAATGCTCTTGTTAGTTCTTGAAGTTCACATGATTCTACCAATTTTGTGTACATTTCAACTACCGAACATATGCACAAGGCAGAAGTATATATGAAAGTTGATATGTAGTCTAACGGATTTAACAACAAATCAGTGATTATCTATCTTGTTGCGAACTTGGAGTAAGGTTCTTTCTCGATTAGACCAGTGGAGTTGATCTTTAGCTCACATATGTTCTTCAGGTTGACGCTGGAACATCAAAGAAGAGCAGGCCGATGTCAGGTGTCATTAGTTTTTACGTCAACAACTTGTTTTTCATTTCTAAATCGTAGTTTCTATTATGCGAGTCTTTTTTCCATCAAGCTCGTGTTCTTTGAATGGTTGCCGTCTACCGGAAGATGCAGAAACCATTTCTAACCTCGCTATTCCCATGCAGCCAATGCTAATGCACTTAAATTGACCTCTAAACTTCTACAAATCTTTGTGTCAGGTACCTAAAGTCAGAGGCTAATTTGGTTTATAAAAAATTTCTTCTTCTTTTAGGTTAACTTTTTTATTTATGCAGAGGCCGTACAGCGTGCTGCAACAATTGCTGAAGCAGAAGGTATTAGCAGAATTGAAGCCACTCATTTGGAGAGGATTCTTCCGCAGTTACTACTGGACTTTTGAGGTAGCATTCCGTTTCATACGTTTCAATGTTTTGCTCTTGAAGATTAAGTTCTTGATTTATGGAGTGATTATTGGGGCTGTATCAGTCGTTAATGCCTAAGTTTGCTAATATGAGAGAGATCTCATAAATAGAATGGGATTGGGGGGTAGATATTGGTATATGTTTCAAGTAGTTTGTAATTGGGAGGGTAGGAGAGAGTTTTCTCGTTTTGTAGTCTTCTTCTGATCCCAATACAAACGTCAATCTGGTTCATCAGTCCAATTCTAACTCGGTGCTCACACTCCATAGTCTATAGAAGTAGGTTTCAGAATGCACAGCTGGTGTTGTGGATAAATTTCTCAATGAAAGAACTTCCTATCCATTAAAAATTCCTCTTGCTGGTTTGTTTGGTTTTTGTAAGAGATTCCTCTAAGGTCGGCTAAGAGATGTCTTTTCCAGGAGGATCAAGCAGCCAATAAAAGAATTTGTATGAACAAGGTCTGTCTGATTCTTGTTCTTCCTCCACTATCAAATAATTTATCATGATTAGTAAGTAATTCTTGTGATCCTATTTTTCGTAAAGCCTGAATAAAAGATTGAAAAGCAGAAAAATATAAAGGAAAAAAATAAAATTCCTTGATCAAAATTGTTGAGTCCCCGTCCAGAGATCTTTTGAGGGCAGAAAAGTAAAAGCCAACAGAACGTGAATGCTAGATATGGGTACTATGGTAATAGAAAATGATCATTAAAATGCAATCCAGGGTTCGTATTGTTAGGATGCCGGTGGGTTCATGATACCTTATGAATGTTTAGTAACTAAAAATAATTACGTTCTATTCTTTGATACGTAATATTGAAGTACTGAGAAGGACAAGTGTCTTGGTTGCAATCTGGACTGTAGCAGTACACAGTGCTCCTCCTCCTGTTTCTGTGCGTCCTCTTAGGGTGTTCCTCATCTTTCTTAGACCTTGCTATTTTATTTTCAAAATTTACGTTTAGGTTTTGCCTTGGAATACGCAAGCAGATGATCAAAGTGCACAAATATATAAACATTTAGATA

mRNA sequence

TCGCTCTCGCAGTCGCTAGTCTCGCTCGCCATGGAAGAGAGCACATTCGATCCTTTATCTTTGTTTCCTCTTCTTTCTGATAATTTCTTCATTTTCCGTTTTGGTGCTCGCATTTCTTCAGAGCGCGAGAAAAACGAGAGCTCGGATGCTATGGATTGTGAGGTTGACGCTGGAACATCAAAGAAGAGCAGGCCGATGTCAGCCAATGCTAATGCACTTAAATTGACCTCTAAACTTCTACAAATCTTTGTGTCAGAGGCCGTACAGCGTGCTGCAACAATTGCTGAAGCAGAAGGTATTAGCAGAATTGAAGCCACTCATTTGGAGAGGATTCTTCCGCAGTTACTACTGGACTTTTGAGGTAGCATTCCGTTTCATACGTTTCAATGTTTTGCTCTTGAAGATTAAGTTCTTGATTTATGGAGTGATTATTGGGGCTGTATCAGTCGTTAATGCCTAAGTTTGCTAATATGAGAGAGATCTCATAAATAGAATGGGATTGGGGGGTAGATATTGGTATATGTTTCAAGTAGTTTGTAATTGGGAGGGTAGGAGAGAGTTTTCTCGTTTTGTAGTCTTCTTCTGATCCCAATACAAACGTCAATCTGGTTCATCAGTCCAATTCTAACTCGGTGCTCACACTCCATAGTCTATAGAAGTAGGTTTCAGAATGCACAGCTGGTGTTGTGGATAAATTTCTCAATGAAAGAACTTCCTATCCATTAAAAATTCCTCTTGCTGGTTTGTTTGGTTTTTGTAAGAGATTCCTCTAAGGTCGGCTAAGAGATGTCTTTTCCAGGAGGATCAAGCAGCCAATAAAAGAATTTGTATGAACAAGGTCTGTCTGATTCTTGTTCTTCCTCCACTATCAAATAATTTATCATGATTAGTAAGTAATTCTTGTGATCCTATTTTTCGTAAAGCCTGAATAAAAGATTGAAAAGCAGAAAAATATAAAGGAAAAAAATAAAATTCCTTGATCAAAATTGTTGAGTCCCCGTCCAGAGATCTTTTGAGGGCAGAAAAGTAAAAGCCAACAGAACGTGAATGCTAGATATGGGTACTATGGTAATAGAAAATGATCATTAAAATGCAATCCAGGGTTCGTATTGTTAGGATGCCGGTGGGTTCATGATACCTTATGAATGTTTAGTAACTAAAAATAATTACGTTCTATTCTTTGATACGTAATATTGAAGTACTGAGAAGGACAAGTGTCTTGGTTGCAATCTGGACTGTAGCAGTACACAGTGCTCCTCCTCCTGTTTCTGTGCGTCCTCTTAGGGTGTTCCTCATCTTTCTTAGACCTTGCTATTTTATTTTCAAAATTTACGTTTAGGTTTTGCCTTGGAATACGCAAGCAGATGATCAAAGTGCACAAATATATAAACATTTAGATA

Coding sequence (CDS)

TCGCTCTCGCAGTCGCTAGTCTCGCTCGCCATGGAAGAGAGCACATTCGATCCTTTATCTTTGTTTCCTCTTCTTTCTGATAATTTCTTCATTTTCCGTTTTGGTGCTCGCATTTCTTCAGAGCGCGAGAAAAACGAGAGCTCGGATGCTATGGATTGTGAGGTTGACGCTGGAACATCAAAGAAGAGCAGGCCGATGTCAGCCAATGCTAATGCACTTAAATTGACCTCTAAACTTCTACAAATCTTTGTGTCAGAGGCCGTACAGCGTGCTGCAACAATTGCTGAAGCAGAAGGTATTAGCAGAATTGAAGCCACTCATTTGGAGAGGATTCTTCCGCAGTTACTACTGGACTTTTGA

Protein sequence

SLSQSLVSLAMEESTFDPLSLFPLLSDNFFIFRFGARISSEREKNESSDAMDCEVDAGTSKKSRPMSANANALKLTSKLLQIFVSEAVQRAATIAEAEGISRIEATHLERILPQLLLDF

Homology

[Close]

BLAST of Carg10304 vs. NCBI nr
Match: XP_022921828.1 (protein MHF2 homolog [Cucurbita moschata])

HSP 1 Score: 154.8 bits (390), Expect = 1.8e-34
Identity = 89/109 (81.65%), Postives = 93/109 (85.32%), Query Frame = 0


Query: 11  MEESTFDPLSLFPLLSDNFFIFRFGARISSEREKNESSDAMDCEVDAGTSKKSRPMSANA 70
           MEESTFDP  +  +    +      +R S EREKNESSDAMDCEVDAGTSKKSRPMSANA
Sbjct: 1   MEESTFDPDLIHAIFKLEW------SRRSLEREKNESSDAMDCEVDAGTSKKSRPMSANA 60

Query: 71  NALKLTSKLLQIFVSEAVQRAATIAEAEGISRIEATHLERILPQLLLDF 120
           NALKLTSKLLQIFVSEAVQRAATIAEAEGISRIEATHLERILPQLLLDF
Sbjct: 61  NALKLTSKLLQIFVSEAVQRAATIAEAEGISRIEATHLERILPQLLLDF 103

[Close]

BLAST of Carg10304 vs. NCBI nr
Match: XP_023516676.1 (protein MHF2 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 153.3 bits (386), Expect = 5.2e-34
Identity = 88/109 (80.73%), Postives = 93/109 (85.32%), Query Frame = 0


Query: 11  MEESTFDPLSLFPLLSDNFFIFRFGARISSEREKNESSDAMDCEVDAGTSKKSRPMSANA 70
           MEESTFDP  +  +    +      +R S EREKNESSDAMDCEVDAGTSKKSRPMSANA
Sbjct: 1   MEESTFDPDLIHAIFKLEW------SRRSLEREKNESSDAMDCEVDAGTSKKSRPMSANA 60

Query: 71  NALKLTSKLLQIFVSEAVQRAATIAEAEGISRIEATHLERILPQLLLDF 120
           NALKL+SKLLQIFVSEAVQRAATIAEAEGISRIEATHLERILPQLLLDF
Sbjct: 61  NALKLSSKLLQIFVSEAVQRAATIAEAEGISRIEATHLERILPQLLLDF 103

[Close]

BLAST of Carg10304 vs. NCBI nr
Match: XP_022987126.1 (protein MHF2 homolog [Cucurbita maxima])

HSP 1 Score: 152.9 bits (385), Expect = 6.8e-34
Identity = 88/109 (80.73%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 11  MEESTFDPLSLFPLLSDNFFIFRFGARISSEREKNESSDAMDCEVDAGTSKKSRPMSANA 70
           MEESTFDP  +  +    +       R S EREKNESSDAMDCEVDAGTSKKSRPMSANA
Sbjct: 1   MEESTFDPDLIHAIFKLEW------TRRSLEREKNESSDAMDCEVDAGTSKKSRPMSANA 60

Query: 71  NALKLTSKLLQIFVSEAVQRAATIAEAEGISRIEATHLERILPQLLLDF 120
           NALKL+SKLLQIFVSEAVQRAATIAEAEGISRIEATHLERILPQLLLDF
Sbjct: 61  NALKLSSKLLQIFVSEAVQRAATIAEAEGISRIEATHLERILPQLLLDF 103

[Close]

BLAST of Carg10304 vs. NCBI nr
Match: XP_022135388.1 (protein MHF2 homolog [Momordica charantia])

HSP 1 Score: 144.8 bits (364), Expect = 1.8e-31
Identity = 83/109 (76.15%), Postives = 91/109 (83.49%), Query Frame = 0


Query: 11  MEESTFDPLSLFPLLSDNFFIFRFGARISSEREKNESSDAMDCEVDAGTSKKSRPMSANA 70
           MEES FD   +  +    +      +R S ERE+NESSDAMDCEV+AGTSKKSRPMSANA
Sbjct: 1   MEESAFDHDLIHAIFKLEW------SRRSLERERNESSDAMDCEVEAGTSKKSRPMSANA 60

Query: 71  NALKLTSKLLQIFVSEAVQRAATIAEAEGISRIEATHLERILPQLLLDF 120
           NALKL+SKLLQIF+SEAVQRAATIAEAEGISRIEATHLERILPQLLLDF
Sbjct: 61  NALKLSSKLLQIFISEAVQRAATIAEAEGISRIEATHLERILPQLLLDF 103

[Close]

BLAST of Carg10304 vs. NCBI nr
Match: XP_008464489.1 (PREDICTED: centromere protein X isoform X2 [Cucumis melo])

HSP 1 Score: 133.3 bits (334), Expect = 5.6e-28
Identity = 78/111 (70.27%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 11  MEESTFDPLSLFPLLSDNFFIFRFGARISSEREKNESSDAMDCEVD--AGTSKKSRPMSA 70
           MEE+ F P  +  +    +      +R S EREKNE+ DAMDCEVD  AGTSKKSRPMSA
Sbjct: 1   MEETGFHPDLIHAIFKLEW------SRRSLEREKNENPDAMDCEVDAGAGTSKKSRPMSA 60

Query: 71  NANALKLTSKLLQIFVSEAVQRAATIAEAEGISRIEATHLERILPQLLLDF 120
           NANALKL+SKL+QIF+SEAVQRAATIAEAEGI RIE THLER+LPQLLLDF
Sbjct: 61  NANALKLSSKLVQIFISEAVQRAATIAEAEGIGRIEPTHLERVLPQLLLDF 105

[Close]

BLAST of Carg10304 vs. TAIR10
Match: AT1G78790.1 (unknown protein)

HSP 1 Score: 103.6 bits (257), Expect = 8.6e-23
Identity = 58/84 (69.05%), Postives = 70/84 (83.33%), Query Frame = 0


Query: 36  ARISSEREKNESSDAMDCEVDAGTSKKSRPMSANANALKLTSKLLQIFVSEAVQRAATIA 95
           AR   ERE++++ DA + EV  GT+KK+R  SANANALKL+ +LL+ FVSEAVQRAA IA
Sbjct: 21  ARRFRERERSDAIDATEAEVALGTTKKNRLASANANALKLSCELLKSFVSEAVQRAAIIA 80

Query: 96  EAEGISRIEATHLERILPQLLLDF 120
           EAEG+ +IEATHLERILPQLLLDF
Sbjct: 81  EAEGMEKIEATHLERILPQLLLDF 104

[Close]

BLAST of Carg10304 vs. Swiss-Prot
Match: sp|Q8L7N3|CENPX_ARATH (Protein MHF2 homolog OS=Arabidopsis thaliana OX=3702 GN=MHF2 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-21
Identity = 58/84 (69.05%), Postives = 70/84 (83.33%), Query Frame = 0


Query: 36  ARISSEREKNESSDAMDCEVDAGTSKKSRPMSANANALKLTSKLLQIFVSEAVQRAATIA 95
           AR   ERE++++ DA + EV  GT+KK+R  SANANALKL+ +LL+ FVSEAVQRAA IA
Sbjct: 21  ARRFRERERSDAIDATEAEVALGTTKKNRLASANANALKLSCELLKSFVSEAVQRAAIIA 80

Query: 96  EAEGISRIEATHLERILPQLLLDF 120
           EAEG+ +IEATHLERILPQLLLDF
Sbjct: 81  EAEGMEKIEATHLERILPQLLLDF 104

[Close]

BLAST of Carg10304 vs. Swiss-Prot
Match: sp|P0DJH7|CENPX_CHICK (Centromere protein X OS=Gallus gallus OX=9031 GN=CENPX PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.1e-06
Identity = 26/51 (50.98%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 69  NANALKLTSKLLQIFVSEAVQRAATIAEAEGISRIEATHLERILPQLLLDF 120
           N +AL L ++LL++FV EA  RAA  A+AE + +++  H+E++LPQLLLDF
Sbjct: 29  NGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQLLLDF 79

[Close]

BLAST of Carg10304 vs. Swiss-Prot
Match: sp|Q2NKU0|CENPX_BOVIN (Centromere protein X OS=Bos taurus OX=9913 GN=CENPX PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 4.1e-06
Identity = 26/58 (44.83%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 62  KSRPMSANANALKLTSKLLQIFVSEAVQRAATIAEAEGISRIEATHLERILPQLLLDF 120
           K +    + +AL+L ++LL+IFV EA  R+   A+AEG++ ++   LE++LPQLLLDF
Sbjct: 22  KDKKTKVSGDALQLVAELLKIFVVEAAIRSVRQAQAEGLAHVDVEQLEKVLPQLLLDF 79

[Close]

BLAST of Carg10304 vs. Swiss-Prot
Match: sp|A8MT69|CENPX_HUMAN (Centromere protein X OS=Homo sapiens OX=9606 GN=CENPX PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.8e-04
Identity = 25/58 (43.10%), Postives = 36/58 (62.07%), Query Frame = 0


Query: 62  KSRPMSANANALKLTSKLLQIFVSEAVQRAATIAEAEGISRIEATHLERILPQLLLDF 120
           K      + +AL+L  +LL++FV EA  R    A+AE   R++   LE++LPQLLLDF
Sbjct: 24  KDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQLLLDF 81

[Close]

BLAST of Carg10304 vs. Swiss-Prot
Match: sp|Q8C4X1|CENPX_MOUSE (Centromere protein X OS=Mus musculus OX=10090 GN=Cenpx PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.8e-04
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 69  NANALKLTSKLLQIFVSEAVQRAATIAEAEGISRIEATHLERILPQLLLDF 120
           + +AL+L ++ L+IFV EA  R    A+AE +  +E   LE++LPQLLLDF
Sbjct: 28  SGDALQLMAEFLRIFVLEAAVRGVWQAQAEDLDVVEVDQLEKVLPQLLLDF 78

[Close]

BLAST of Carg10304 vs. TrEMBL
Match: tr|A0A1S3CLK5|A0A1S3CLK5_CUCME (centromere protein X isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502356 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.7e-28
Identity = 78/111 (70.27%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 11  MEESTFDPLSLFPLLSDNFFIFRFGARISSEREKNESSDAMDCEVD--AGTSKKSRPMSA 70
           MEE+ F P  +  +    +      +R S EREKNE+ DAMDCEVD  AGTSKKSRPMSA
Sbjct: 1   MEETGFHPDLIHAIFKLEW------SRRSLEREKNENPDAMDCEVDAGAGTSKKSRPMSA 60

Query: 71  NANALKLTSKLLQIFVSEAVQRAATIAEAEGISRIEATHLERILPQLLLDF 120
           NANALKL+SKL+QIF+SEAVQRAATIAEAEGI RIE THLER+LPQLLLDF
Sbjct: 61  NANALKLSSKLVQIFISEAVQRAATIAEAEGIGRIEPTHLERVLPQLLLDF 105

[Close]

BLAST of Carg10304 vs. TrEMBL
Match: tr|A0A0A0LU58|A0A0A0LU58_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G002850 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.8e-27
Identity = 79/112 (70.54%), Postives = 90/112 (80.36%), Query Frame = 0


Query: 11  MEESTFDPLSLFPLLSDNFFIFRFGARISSEREKNESS-DAMDCEVD--AGTSKKSRPMS 70
           MEE+ F P  +  +    +      +R S EREKNE++ DAMDCEVD  AGTSKKSRPMS
Sbjct: 72  MEETGFHPDLIHAIFKLEW------SRRSLEREKNENNPDAMDCEVDAGAGTSKKSRPMS 131

Query: 71  ANANALKLTSKLLQIFVSEAVQRAATIAEAEGISRIEATHLERILPQLLLDF 120
           ANANALKL+SKL+QIF+SEAVQRAATIAEAEGISRIE THLER+LPQLLLDF
Sbjct: 132 ANANALKLSSKLVQIFISEAVQRAATIAEAEGISRIEPTHLERVLPQLLLDF 177

[Close]

BLAST of Carg10304 vs. TrEMBL
Match: tr|A0A067K7I4|A0A067K7I4_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_11379 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.0e-25
Identity = 71/112 (63.39%), Postives = 87/112 (77.68%), Query Frame = 0


Query: 11  MEESTFDP---LSLFPLLSDNFFIFRFGARISSEREKNESSDAMDCEVDAGTSKKSRPMS 70
           ME+ TFDP    ++F L+          ++ + EREKNE +DAMDCEV  GTSKK RP S
Sbjct: 56  MEDDTFDPDLVHAIFKLV---------WSKRALEREKNEVTDAMDCEVGVGTSKKIRPTS 115

Query: 71  ANANALKLTSKLLQIFVSEAVQRAATIAEAEGISRIEATHLERILPQLLLDF 120
           AN+NALKL+ +LL++F+SEAVQRAATIAEAEG+ +IEATHLERILPQLLLDF
Sbjct: 116 ANSNALKLSCELLRVFISEAVQRAATIAEAEGVEKIEATHLERILPQLLLDF 158

[Close]

BLAST of Carg10304 vs. TrEMBL
Match: tr|A0A1S3CLJ8|A0A1S3CLJ8_CUCME (centromere protein X isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502356 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.9e-24
Identity = 74/112 (66.07%), Postives = 85/112 (75.89%), Query Frame = 0


Query: 11  MEESTFDPLSLFPLLSDNFFIFRFGARISSEREKNESSDAMDCEVD--AGTSKKSRPMSA 70
           MEE+ F P  +  +    +      +R S EREKNE+ DAMDCEVD  AGTSKKSRPMSA
Sbjct: 1   MEETGFHPDLIHAIFKLEW------SRRSLEREKNENPDAMDCEVDAGAGTSKKSRPMSA 60

Query: 71  NANALKLTSKLLQIFV-SEAVQRAATIAEAEGISRIEATHLERILPQLLLDF 120
           NANALKL+SKL+   + +EAVQRAATIAEAEGI RIE THLER+LPQLLLDF
Sbjct: 61  NANALKLSSKLVNFSICAEAVQRAATIAEAEGIGRIEPTHLERVLPQLLLDF 106

[Close]

BLAST of Carg10304 vs. TrEMBL
Match: tr|A0A2C9VPV6|A0A2C9VPV6_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G112300 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.2e-24
Identity = 67/112 (59.82%), Postives = 87/112 (77.68%), Query Frame = 0


Query: 11  MEESTFDP---LSLFPLLSDNFFIFRFGARISSEREKNESSDAMDCEVDAGTSKKSRPMS 70
           M+++ FDP    ++F L+          +R + EREKNE +DA+DCEV  GTSKK RP S
Sbjct: 1   MDDNAFDPDLIRAIFKLV---------WSRRALEREKNEGADAVDCEVGVGTSKKIRPTS 60

Query: 71  ANANALKLTSKLLQIFVSEAVQRAATIAEAEGISRIEATHLERILPQLLLDF 120
           AN+NA+KL+ +LL++FV+EAVQRAA IAEAEG+S+IEATHLERILPQLL+DF
Sbjct: 61  ANSNAVKLSCELLRVFVAEAVQRAAAIAEAEGVSKIEATHLERILPQLLMDF 103

The following BLAST results are available for this feature:

BLAST of Carg10304 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022921828.1	1.8e-34	81.65	protein MHF2 homolog [Cucurbita moschata]	[more]
XP_023516676.1	5.2e-34	80.73	protein MHF2 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022987126.1	6.8e-34	80.73	protein MHF2 homolog [Cucurbita maxima]	[more]
XP_022135388.1	1.8e-31	76.15	protein MHF2 homolog [Momordica charantia]	[more]
XP_008464489.1	5.6e-28	70.27	PREDICTED: centromere protein X isoform X2 [Cucumis melo]	[more]

BLAST of Carg10304 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G78790.1	8.6e-23	69.05	unknown protein	[more]

BLAST of Carg10304 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8L7N3\|CENPX_ARATH	1.5e-21	69.05	Protein MHF2 homolog OS=Arabidopsis thaliana OX=3702 GN=MHF2 PE=3 SV=1	[more]
sp\|P0DJH7\|CENPX_CHICK	1.1e-06	50.98	Centromere protein X OS=Gallus gallus OX=9031 GN=CENPX PE=1 SV=1	[more]
sp\|Q2NKU0\|CENPX_BOVIN	4.1e-06	44.83	Centromere protein X OS=Bos taurus OX=9913 GN=CENPX PE=3 SV=1	[more]
sp\|A8MT69\|CENPX_HUMAN	3.8e-04	43.10	Centromere protein X OS=Homo sapiens OX=9606 GN=CENPX PE=1 SV=1	[more]
sp\|Q8C4X1\|CENPX_MOUSE	3.8e-04	47.06	Centromere protein X OS=Mus musculus OX=10090 GN=Cenpx PE=2 SV=1	[more]

BLAST of Carg10304 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CLK5\|A0A1S3CLK5_CUCME	3.7e-28	70.27	centromere protein X isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502356 PE=4 SV=...	[more]
tr\|A0A0A0LU58\|A0A0A0LU58_CUCSA	1.8e-27	70.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G002850 PE=4 SV=1	[more]
tr\|A0A067K7I4\|A0A067K7I4_JATCU	1.0e-25	63.39	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_11379 PE=4 SV=1	[more]
tr\|A0A1S3CLJ8\|A0A1S3CLJ8_CUCME	1.9e-24	66.07	centromere protein X isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502356 PE=4 SV=...	[more]
tr\|A0A2C9VPV6\|A0A2C9VPV6_MANES	3.2e-24	59.82	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G112300 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006281	DNA repair
GO:0051382	kinetochore assembly

Vocabulary: **INTERPRO**
Term	Definition
IPR018552	CENP-X

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:0051382	kinetochore assembly
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10304-RA	Carg10304-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.10.286.100		coord: 78..119 e-value: 8.5E-20 score: 72.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..65
IPR018552	Centromere protein X	PFAM	PF09415	CENP-X	coord: 66..119 e-value: 1.5E-15 score: 57.1
IPR018552	Centromere protein X	PANTHER	PTHR28680	FAMILY NOT NAMED	coord: 13..119

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg10304	Cla019243	Watermelon (97103) v1	carwmB0356
Carg10304	Csa1G002850	Cucumber (Chinese Long) v2	carcuB0391
Carg10304	ClCG06G017550	Watermelon (Charleston Gray)	carwcgB0357
Carg10304	CSPI01G00850	Wild cucumber (PI 183967)	carcpiB0396
Carg10304	Cucsa.196300	Cucumber (Gy14) v1	carcgyB0423
Carg10304	CmaCh10G000810	Cucurbita maxima (Rimu)	carcmaB0510
Carg10304	CmoCh10G000820	Cucurbita moschata (Rifu)	carcmoB0493
Carg10304	Lsi06G016080	Bottle gourd (USVL1VR-Ls)	carlsiB331
Carg10304	CsGy1G000890	Cucumber (Gy14) v2	carcgybB0371
Carg10304	MELO3C026242.2	Melon (DHL92) v3.6.1	carmedB0375
Carg10304	CsaV3_1G000900	Cucumber (Chinese Long) v3	carcucB0395
Carg10304	Cla97C06G127260	Watermelon (97103) v2	carwmbB0382
Carg10304	Bhi02G000439	Wax gourd	carwgoB0447

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg10304	Silver-seed gourd	carcarB387
Carg10304	Silver-seed gourd	carcarB388
Carg10304	Silver-seed gourd	carcarB393
Carg10304	Silver-seed gourd	carcarB396
Carg10304	Cucurbita maxima (Rimu)	carcmaB0511
Carg10304	Cucurbita maxima (Rimu)	carcmaB0513
Carg10304	Cucurbita moschata (Rifu)	carcmoB0494
Carg10304	Cucurbita moschata (Rifu)	carcmoB0495
Carg10304	Cucurbita moschata (Rifu)	carcmoB0498
Carg10304	Cucurbita moschata (Rifu)	carcmoB0501
Carg10304	Cucurbita pepo (Zucchini)	carcpeB0508
Carg10304	Cucurbita pepo (Zucchini)	carcpeB0509
Carg10304	Cucurbita pepo (Zucchini)	carcpeB0513
Carg10304	Cucurbita pepo (Zucchini)	carcpeB0514
Carg10304	Melon (DHL92) v3.5.1	carmeB0369
Carg10304	Watermelon (97103) v1	carwmB0353
Carg10304	Watermelon (97103) v2	carwmbB0383
Carg10304	Wax gourd	carwgoB0443