Cucsa.192650 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.192650
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRING/U-box superfamily protein
Locationscaffold01333 : 518284 .. 518930 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATAGAAATAATAATAATCTTCCTTTTCAAAAAAGGAAAATAATTAAAAAAGTAGTTTCAATAAAGAAACTGATAAAAGTAGAAGAAAGCGAAAAGGAACAAAAACACATACCCAACAAAATAATAATAATTCCATAAACTAAACAATTTCCTAATCGGAACTTGATTACCATTCTTCCATTATAAATCTAATTAAATCCATAACTTCTTAGTTCTCTTCGTCTTAATTCCCACAATGTCTTCCTCCATACGCTTCACTCTCCGCCGCCACAACGTCAGGCACGATCAATCTCTCCAAAACCGAAACCCATCGAGGCTTCCACTTCCATCCGACGAACTTCCGTACAATATCCTCCATCTAATTAGGCGCCGTGTTATGGGGGAGGAAACGGTGATTCTGGAAGAAGATCCGGCGAGGAGAAGGGCGCGGGAGAAGGCGATTGAGAGGCTGACGATCAGCGAGAAAGATGATGGGTTGTTTGAGGGAGAAGAGTTGGGAGATTGTTGTATTTGTTGCGAAGAACTGAATGGAGGGGAGAAGAAGAAGGTTTGTAGAATCAAGTGCGGCCATGTCTATCATAGATGCTGTATACTCACTTGGGTTCGAACAAAACTTTCTTGTCCTTTGTGTAGAAGGAAAATATAG

mRNA sequence

atatagaaataataataatCTTCCTTTTCAAAAAAGGAAAATAATTAAAAAAGTAGTTTCAATAAAGAAACTGATAAAAGTAGAAGAAAGCGAAAAGGAACAAAAACACATACCCAACAAAATAATAATAATTCCATAAACTAAACAATTTCCTAATCGGAACTTGATTACCATTCTTCCATTATAAATCTAATTAAATCCATAACTTCTTAGTTCTCTTCGTCTTAATTCCCACAATGTCTTCCTCCATACGCTTCACTCTCCGCCGCCACAACGTCAGGCACGATCAATCTCTCCAAAACCGAAACCCATCGAGGCTTCCACTTCCATCCGACGAACTTCCGTACAATATCCTCCATCTAATTAGGCGCCGTGTTATGGGGGAGGAAACGGTGATTCTGGAAGAAGATCCGGCGAGGAGAAGGGCGCGGGAGAAGGCGATTGAGAGGCTGACGATCAGCGAGAAAGATGATGGGTTGTTTGAGGGAGAAGAGTTGGGAGATTGTTGTATTTGTTGCGAAGAACTGAATGGAGGGGAGAAGAAGAAGGTTTGTAGAATCAAGTGCGGCCATGTCTATCATAGATGCTGTATACTCACTTGGGTTCGAACAAAACTTTCTTGTCCTTTGTGTAGAAGGAAAATATAG

Coding sequence (CDS)

ATGTCTTCCTCCATACGCTTCACTCTCCGCCGCCACAACGTCAGGCACGATCAATCTCTCCAAAACCGAAACCCATCGAGGCTTCCACTTCCATCCGACGAACTTCCGTACAATATCCTCCATCTAATTAGGCGCCGTGTTATGGGGGAGGAAACGGTGATTCTGGAAGAAGATCCGGCGAGGAGAAGGGCGCGGGAGAAGGCGATTGAGAGGCTGACGATCAGCGAGAAAGATGATGGGTTGTTTGAGGGAGAAGAGTTGGGAGATTGTTGTATTTGTTGCGAAGAACTGAATGGAGGGGAGAAGAAGAAGGTTTGTAGAATCAAGTGCGGCCATGTCTATCATAGATGCTGTATACTCACTTGGGTTCGAACAAAACTTTCTTGTCCTTTGTGTAGAAGGAAAATATAG

Protein sequence

MSSSIRFTLRRHNVRHDQSLQNRNPSRLPLPSDELPYNILHLIRRRVMGEETVILEEDPARRRAREKAIERLTISEKDDGLFEGEELGDCCICCEELNGGEKKKVCRIKCGHVYHRCCILTWVRTKLSCPLCRRKI*
Homology
[Close]
BLAST of Cucsa.192650 vs. Swiss-Prot
Match: ATL66_ARATH (RING-H2 finger protein ATL66 OS=Arabidopsis thaliana GN=ATL66 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 9.3e-07
Identity = 26/54 (48.15%), Postives = 31/54 (57.41%), Query Frame = 1 

Query: 83  EGEELGDCCICCEELNGGEKKKVCRIKCGHVYHRCCILTWVRTKLSCPLCRRKI 137
           E EE  +CCIC      GEK KV    C H YH  C+  W++T+ SCPLCR  I
Sbjct: 100 EEEEEKECCICLGGFEEGEKMKVLP-PCSHCYHCECVDRWLKTESSCPLCRVSI 152

[Close]
BLAST of Cucsa.192650 vs. Swiss-Prot
Match: RNF13_RAT (E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-06
Identity = 25/77 (32.47%), Postives = 45/77 (58.44%), Query Frame = 1 

Query: 61  RRRAREKAIERLTISEKDDGLFEGEELGDCCICCEELNGGEKKKVCRIKCGHVYHRCCIL 120
           R R R+  +++L + +      +G+E   C IC EE   G+K ++  + C H YH  C+ 
Sbjct: 215 RNRLRKDQLKKLPVHK----FKKGDEYDVCAICLEEYEDGDKLRI--LPCSHAYHCKCVD 274

Query: 121 TWV-RTKLSCPLCRRKI 137
            W+ +TK +CP+C++K+
Sbjct: 275 PWLTKTKKTCPVCKQKV 285

[Close]
BLAST of Cucsa.192650 vs. Swiss-Prot
Match: RNF13_MOUSE (E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-06
Identity = 25/77 (32.47%), Postives = 45/77 (58.44%), Query Frame = 1 

Query: 61  RRRAREKAIERLTISEKDDGLFEGEELGDCCICCEELNGGEKKKVCRIKCGHVYHRCCIL 120
           R R R+  +++L + +      +G+E   C IC EE   G+K ++  + C H YH  C+ 
Sbjct: 215 RNRLRKDQLKKLPVHK----FKKGDEYDVCAICLEEYEDGDKLRI--LPCSHAYHCKCVD 274

Query: 121 TWV-RTKLSCPLCRRKI 137
            W+ +TK +CP+C++K+
Sbjct: 275 PWLTKTKKTCPVCKQKV 285

[Close]
BLAST of Cucsa.192650 vs. Swiss-Prot
Match: RHG1A_ARATH (Probable E3 ubiquitin-protein ligase RHG1A OS=Arabidopsis thaliana GN=RHG1A PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.6e-06
Identity = 33/125 (26.40%), Postives = 56/125 (44.80%), Query Frame = 1 

Query: 9   LRRHNVRHDQSLQNRNPSRLPLPSDELPYNILHLIRRRVMGEETVILEEDPARRRAREKA 68
           L  H+V  D +  +     + L  D + Y  L  +  R+ G+    + E+    R +++ 
Sbjct: 565 LLNHSVLFDGATGHDRYRDMRLDVDNMSYEELLALEERI-GDVCTGVNEETISNRLKQRK 624

Query: 69  IERLTISEKDDGLFEGEELGDCCICCEELNGGEKKKVCRIKCGHVYHRCCILTWVRTKLS 128
            +  T S +D           CC+C EE   GE      ++CGH +H  CI  W++ K  
Sbjct: 625 YKSNTKSPQD--------AEPCCVCQEEYTEGEDMGT--LECGHEFHSQCIKEWLKQKNL 678

Query: 129 CPLCR 134
           CP+C+
Sbjct: 685 CPICK 678

[Close]
BLAST of Cucsa.192650 vs. Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.7e-06
Identity = 28/70 (40.00%), Postives = 39/70 (55.71%), Query Frame = 1 

Query: 64  AREKAIERLTISEKDDGLFEGEELGDCCICCEELNGGEKKKVCRIKCGHVYHRCCILTWV 123
           A + AIE L   E      EGE +  C +C + +  GE  K  ++ CGH YH  CI+ W+
Sbjct: 233 AAKSAIEALETFEVSSS--EGEMVMVCAVCKDGMVMGETGK--KLPCGHCYHGDCIVPWL 292

Query: 124 RTKLSCPLCR 134
            T+ SCP+CR
Sbjct: 293 GTRNSCPVCR 298

[Close]
BLAST of Cucsa.192650 vs. TrEMBL
Match: A0A0A0LER3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G680620 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 3.0e-52
Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 1   MSSSIRFTLRRHNVRHDQSLQNRNPSRLPLPSDELPYNILHLIRRRVMGEETVILEEDPA 60
           MSSSIRFTLRRHNVRHDQSLQNRNPSRLPLPSDELPYNILHLIRRRVMGEETVILEEDPA
Sbjct: 1   MSSSIRFTLRRHNVRHDQSLQNRNPSRLPLPSDELPYNILHLIRRRVMGEETVILEEDPA 60

Query: 61  RRRAREKAIERLTISEKDDGLFEGEELGDCCICCEELNGGEKKK 105
           RRRA+EKAIERLTISEKDDGLFEGEELGDCCICCEELNGGEKKK
Sbjct: 61  RRRAQEKAIERLTISEKDDGLFEGEELGDCCICCEELNGGEKKK 104

[Close]
BLAST of Cucsa.192650 vs. TrEMBL
Match: A0A0A0LHS2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G130680 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.7e-12
Identity = 44/82 (53.66%), Postives = 51/82 (62.20%), Query Frame = 1 

Query: 56  EEDPARRRAREKAIERLTISEKDDGLF--EGEELGDCCICCEELN--GGEKKKVCRIKCG 115
           EE    R A E AIER+   +K DG    E EE+GDC +CCEE+   GGE   V RI CG
Sbjct: 142 EEGLPPRGASESAIERVK-KQKFDGFRGEEEEEIGDCSVCCEEIKRKGGE---VRRIPCG 201

Query: 116 HVYHRCCILTWVRTKLSCPLCR 134
           HVYH+ CIL W+    SCPLCR
Sbjct: 202 HVYHKSCILKWLEISNSCPLCR 219

[Close]
BLAST of Cucsa.192650 vs. TrEMBL
Match: A0A0A0K2W2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G025210 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 43/89 (48.31%), Postives = 53/89 (59.55%), Query Frame = 1 

Query: 50  EETVILEEDP--ARRRAREKAIERLTISEKDDGLFEGEELGDCCICCEELNGGEKKKVCR 109
           EETV+L+E P   +R       ERL   EK       EELGDC IC +EL+  EK++V R
Sbjct: 137 EETVVLDEAPPAVKRGVGVARGERLRSEEKM------EELGDCSICLDELSC-EKREVMR 196

Query: 110 IKCGHVYHRCCILTWVRTKLSCPLCRRKI 137
           I CGHVYH  CI  W+    SCPLCR+ +
Sbjct: 197 IPCGHVYHESCIFKWLENHNSCPLCRKPL 218

[Close]
BLAST of Cucsa.192650 vs. TrEMBL
Match: A0A0A0K696_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 43/89 (48.31%), Postives = 53/89 (59.55%), Query Frame = 1 

Query: 50  EETVILEEDP--ARRRAREKAIERLTISEKDDGLFEGEELGDCCICCEELNGGEKKKVCR 109
           EETV+L+E P   +R       ERL   EK       EELGDC IC +EL+  EK++V R
Sbjct: 137 EETVVLDEAPPAVKRGVGVARGERLRSEEKM------EELGDCSICLDELSC-EKREVMR 196

Query: 110 IKCGHVYHRCCILTWVRTKLSCPLCRRKI 137
           I CGHVYH  CI  W+    SCPLCR+ +
Sbjct: 197 IPCGHVYHESCIFKWLENHNSCPLCRKPL 218

[Close]
BLAST of Cucsa.192650 vs. TrEMBL
Match: A0A0A0KYC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G003650 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.7e-10
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 1 

Query: 55  LEEDPARRRAREKAIERLTISEKDDGLFEGEELGDCCICCEELNGGEKKKVCRIKCGHVY 114
           +EE P     R  A+ERL+  + +      EE GDC +C +EL+  EK++V RI CGHVY
Sbjct: 121 IEEQPRAEGWRGVAVERLSKLKSE------EEKGDCSVCLDELDC-EKREVIRIPCGHVY 180

Query: 115 HRCCILTWVRTKLSCPLCR 134
           H  CI  W+ +  SCPLCR
Sbjct: 181 HESCIFKWLNSSNSCPLCR 192

[Close]
BLAST of Cucsa.192650 vs. TAIR10
Match: AT4G18110.1 (AT4G18110.1 RING/U-box superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-08
Identity = 22/49 (44.90%), Postives = 33/49 (67.35%), Query Frame = 1 

Query: 89  DCCICCEEL-NGGEKKKVCRIKCGHVYHRCCILTWVRTKLSCPLCRRKI 137
           +C IC EEL + G ++++ ++ C H +H+ CIL W+R K SCP CR  I
Sbjct: 154 ECIICLEELASSGSERRIMKLLCSHSFHKDCILPWLRCKRSCPTCRDDI 202

[Close]
BLAST of Cucsa.192650 vs. TAIR10
Match: AT1G45180.1 (AT1G45180.1 RING/U-box superfamily protein)

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-08
Identity = 30/104 (28.85%), Postives = 53/104 (50.96%), Query Frame = 1 

Query: 30  LPSDELPYNILHLIRRRVMGEETVILEEDPARRRAREKAIERLTISEKDDGLFEGEELGD 89
           L  D + Y  L  +  R+ G+    L E+    R +++  +  T S         +E+  
Sbjct: 541 LDVDNMTYEELLSLEERI-GDVCTGLNEETISNRLKQQKYKSSTRSS--------QEVEP 600

Query: 90  CCICCEELNGGEKKKVCRIKCGHVYHRCCILTWVRTKLSCPLCR 134
           CC+C EE    E++++ R++CGH +H  CI  W++ K  CP+C+
Sbjct: 601 CCVCQEEYK--EEEEIGRLECGHDFHSQCIKEWLKQKNLCPICK 633

[Close]
BLAST of Cucsa.192650 vs. TAIR10
Match: AT5G41440.1 (AT5G41440.1 RING/U-box superfamily protein)

HSP 1 Score: 55.5 bits (132), Expect = 3.1e-08
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 1 

Query: 68  AIERLTISE--KDDGLFEGEELGDCCICCEELNGGEKKKVCRIKCGHVYHRCCILTWVRT 127
           AI + T+    K + + EG+E G C IC EE   G +  +C  KC HV+HR C+L+W+  
Sbjct: 55  AINKTTVETIIKVEDVEEGDE-GCCSICLEEFKIGHEL-MCIKKCRHVFHRFCMLSWIDA 114

Query: 128 KLSCPLCR 134
             +CP+CR
Sbjct: 115 NRNCPICR 120

[Close]
BLAST of Cucsa.192650 vs. TAIR10
Match: AT5G54990.1 (AT5G54990.1 RING/U-box superfamily protein)

HSP 1 Score: 55.5 bits (132), Expect = 3.1e-08
Identity = 22/47 (46.81%), Postives = 31/47 (65.96%), Query Frame = 1 

Query: 89  DCCICCEELNGGEKKKVCRIKCGHVYHRCCILTWVRTKLSCPLCRRK 136
           DC IC  EL+ G  +   ++ C HV+HR CI+TW++   SCP+CR K
Sbjct: 173 DCPICLTELSSGVSRM--KLPCSHVFHRDCIMTWLKKNPSCPICRTK 217

[Close]
BLAST of Cucsa.192650 vs. TAIR10
Match: AT4G05350.1 (AT4G05350.1 RING/U-box superfamily protein)

HSP 1 Score: 55.1 bits (131), Expect = 4.0e-08
Identity = 24/52 (46.15%), Postives = 32/52 (61.54%), Query Frame = 1 

Query: 86  ELGDCCICCEELNGGEKKK-VCRIKCGHVYHRCCILTWVRTKLSCPLCRRKI 137
           E   C IC E L  G K + V R+ C HV+H  C+L W++ K +CPLCR +I
Sbjct: 153 ETEPCSICLESLVSGPKPRDVTRMTCSHVFHNGCLLEWLKRKNTCPLCRTEI 204

[Close]
BLAST of Cucsa.192650 vs. NCBI nr
Match: gi|700203413|gb|KGN58546.1| (hypothetical protein Csa_3G680620 [Cucumis sativus])

HSP 1 Score: 212.6 bits (540), Expect = 4.3e-52
Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 1   MSSSIRFTLRRHNVRHDQSLQNRNPSRLPLPSDELPYNILHLIRRRVMGEETVILEEDPA 60
           MSSSIRFTLRRHNVRHDQSLQNRNPSRLPLPSDELPYNILHLIRRRVMGEETVILEEDPA
Sbjct: 1   MSSSIRFTLRRHNVRHDQSLQNRNPSRLPLPSDELPYNILHLIRRRVMGEETVILEEDPA 60

Query: 61  RRRAREKAIERLTISEKDDGLFEGEELGDCCICCEELNGGEKKK 105
           RRRA+EKAIERLTISEKDDGLFEGEELGDCCICCEELNGGEKKK
Sbjct: 61  RRRAQEKAIERLTISEKDDGLFEGEELGDCCICCEELNGGEKKK 104

[Close]
BLAST of Cucsa.192650 vs. NCBI nr
Match: gi|659123912|ref|XP_008461900.1| (PREDICTED: RING-H2 finger protein ATL64-like [Cucumis melo])

HSP 1 Score: 147.9 bits (372), Expect = 1.3e-32
Identity = 82/145 (56.55%), Postives = 95/145 (65.52%), Query Frame = 1 

Query: 1   MSSSIRFTLRRHNVRHDQSLQNRNPSR----LPLPSDEL-PYNILHLIRRRVMGEETVIL 60
           MS+ IRFT RRH  RHD+SLQNR+  R     PLP +EL PY+++H  RRRV+ +E VI 
Sbjct: 1   MSNPIRFTRRRHIARHDRSLQNRSRLRGHPFPPLPPNELLPYDVIHPFRRRVLRDERVIP 60

Query: 61  EEDPARRRAREKAIERLTISEKDDGLFEGEELGDCCICCEELNGGE----KKKVCRIKCG 120
           EEDPA              SE+ DG  E E  GDCCIC EELN       KK+VCR+KCG
Sbjct: 61  EEDPA--------------SEEVDGYEEEELEGDCCICWEELNEEPNEKGKKEVCRVKCG 120

Query: 121 HVYHRCCILTWVRTKLSCPLCRRKI 137
           HVYH+ CIL WVR  LSCPLCRRKI
Sbjct: 121 HVYHKSCILAWVRRNLSCPLCRRKI 131

[Close]
BLAST of Cucsa.192650 vs. NCBI nr
Match: gi|659083325|ref|XP_008442291.1| (PREDICTED: RING finger protein 165-like [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 7.6e-17
Identity = 52/109 (47.71%), Postives = 68/109 (62.39%), Query Frame = 1 

Query: 27  RLPLPSDELPYNILHLIRRRVMGEETVILEEDPARRRAREKAIERLTISEKDDGLF--EG 86
           R  LPS ++  NI H +   ++GE+       P  R A E AIERL + +K DG    E 
Sbjct: 53  RAILPSFKIEANIDH-VEDLIIGEQGFQETPPPRTRGAPESAIERLIMKQKFDGFNKEEE 112

Query: 87  EELGDCCICCEELNGGEKKKVCRIKCGHVYHRCCILTWVRTKLSCPLCR 134
           EE+GDC +C EEL G + K+V RI CGHVYH+ C+LTW++   SCPLCR
Sbjct: 113 EEIGDCSVCYEELKG-KGKEVSRIPCGHVYHKSCVLTWLQINNSCPLCR 159

[Close]
BLAST of Cucsa.192650 vs. NCBI nr
Match: gi|659121671|ref|XP_008460768.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 7.9e-14
Identity = 49/103 (47.57%), Postives = 64/103 (62.14%), Query Frame = 1 

Query: 32  SDELPYNILHLIRRRVMGEETVILEEDPARRR-AREKAIERLTISEKDDGLFEGEELGDC 91
           S ++  N+ H +   ++GE+       P R   A E AIERL   EK D L + EE+GDC
Sbjct: 107 SFKIEANVEH-VEDLIIGEQGFQETPSPPRTTGAPESAIERLR-KEKFDVLNKEEEIGDC 166

Query: 92  CICCEELNGGEKKKVCRIKCGHVYHRCCILTWVRTKLSCPLCR 134
            +C EEL G + K+V RI CGHVYH+ CILTW++   SCPLCR
Sbjct: 167 SVCYEELKG-QGKEVSRIPCGHVYHKSCILTWLQINNSCPLCR 206

[Close]
BLAST of Cucsa.192650 vs. NCBI nr
Match: gi|659114890|ref|XP_008457277.1| (PREDICTED: RING finger protein 165-like [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 5.7e-12
Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 1 

Query: 56  EEDPARRRAREKAIERLTISEKD-DGLFEGEELGDCCICCEELNGGEKKKVCRIKCGHVY 115
           EE  + R A E AIER+   + D     E EE+GDCC+CCEE+   + ++V RI CGHVY
Sbjct: 142 EEGLSPRGASESAIERVKKQKLDWFSEEEEEEIGDCCVCCEEMKR-KGEEVRRIPCGHVY 201

Query: 116 HRCCILTWVRTKLSCPLCR 134
           H+ CIL W+    SCPLCR
Sbjct: 202 HKSCILKWLEISNSCPLCR 219

The following BLAST results are available for this feature:
BLAST of Cucsa.192650 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL66_ARATH9.3e-0748.15RING-H2 finger protein ATL66 OS=Arabidopsis thaliana GN=ATL66 PE=2 SV=1[more]
RNF13_RAT1.2e-0632.47E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13 PE=2 SV=1[more]
RNF13_MOUSE1.2e-0632.47E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1 SV=2[more]
RHG1A_ARATH1.6e-0626.40Probable E3 ubiquitin-protein ligase RHG1A OS=Arabidopsis thaliana GN=RHG1A PE=2... [more]
CIP8_ARATH2.7e-0640.00E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1[more]
BLAST of Cucsa.192650 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LER3_CUCSA3.0e-5299.04Uncharacterized protein OS=Cucumis sativus GN=Csa_3G680620 PE=4 SV=1[more]
A0A0A0LHS2_CUCSA6.7e-1253.66Uncharacterized protein OS=Cucumis sativus GN=Csa_2G130680 PE=4 SV=1[more]
A0A0A0K2W2_CUCSA1.1e-1148.31Uncharacterized protein OS=Cucumis sativus GN=Csa_7G025210 PE=4 SV=1[more]
A0A0A0K696_CUCSA1.1e-1148.31Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1[more]
A0A0A0KYC0_CUCSA3.7e-1045.57Uncharacterized protein OS=Cucumis sativus GN=Csa_4G003650 PE=4 SV=1[more]
BLAST of Cucsa.192650 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G18110.11.8e-0844.90 RING/U-box superfamily protein[more]
AT1G45180.12.4e-0828.85 RING/U-box superfamily protein[more]
AT5G41440.13.1e-0841.18 RING/U-box superfamily protein[more]
AT5G54990.13.1e-0846.81 RING/U-box superfamily protein[more]
AT4G05350.14.0e-0846.15 RING/U-box superfamily protein[more]
BLAST of Cucsa.192650 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700203413|gb|KGN58546.1|4.3e-5299.04hypothetical protein Csa_3G680620 [Cucumis sativus][more]
gi|659123912|ref|XP_008461900.1|1.3e-3256.55PREDICTED: RING-H2 finger protein ATL64-like [Cucumis melo][more]
gi|659083325|ref|XP_008442291.1|7.6e-1747.71PREDICTED: RING finger protein 165-like [Cucumis melo][more]
gi|659121671|ref|XP_008460768.1|7.9e-1447.57PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo][more]
gi|659114890|ref|XP_008457277.1|5.7e-1250.63PREDICTED: RING finger protein 165-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.192650.1Cucsa.192650.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 89..133
score: 1.
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 90..132
score: 1.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 90..133
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 87..136
score: 1.9
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 89..136
score: 1.54