Cla017306 (gene) Watermelon (97103) v1

Overview
NameCla017306
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionE3 ubiquitin-protein ligase CG7694 (AHRD V1 *--- RN181_DROME); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type
LocationChr10 : 17587466 .. 17588152 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCTCTCGAAACCGCTTCTACCTTCCGCTTCAGTCTCCGCCGCCACGACGCCACCGACGATCAATCTCTCCTAATCCGATTGGGGTTTTCGCAACGTAAGCTCTCCCGATCGCCGTCCGCCGGACTTCCCTACCAAATCCTCCATGAATCTCCCACGATTCCAATGCGAATCACTATATTCCCTCTCCCGTTGCGAGAACTCGAACATCCGTTGCTCTGTCATGCTTACGTCGTTCGATTGCTCTCTTACTTGGACCTCACCGCCGGAACCTGCGATATAATCGCTAAGGATATCACGTCTCTCGTTGGTGAGTTGTTGGCCGCCGGAAACTTCGAGGTTAAGTTCCGCATCGTGGCGTTAATCTATCATATCCAATTGTCCTGGGGTGACCAGATAGGTGAAAGCAGGCAAAGTGTTGCGGCGGAGCAGACGGTGATTTTGGAAGAAGCTCCGGCGAGGAAGACGGCGGCGGAGAAGGCGATTGAGAGGTTGAAGAGGGAGAAATTCGATGGGTTTGTGGGAGAAGAATTGGGAGATTGCTGTGTTTGTTACGAAGAATTGAAGGAAGGGGGGAAGGAGGTGAGTAGAATCGGGTGCGGTCATGTCTATCATAAGTCCTGTATTCTCACTTGGGTTCAAAGAAGTGATTCTTGTCCTTTGTGCAGAATGAAAATAGAATAA

mRNA sequence

ATGTCTTCTCTCGAAACCGCTTCTACCTTCCGCTTCAGTCTCCGCCGCCACGACGCCACCGACGATCAATCTCTCCTAATCCGATTGGGGTTTTCGCAACGTAAGCTCTCCCGATCGCCGTCCGCCGGACTTCCCTACCAAATCCTCCATGAATCTCCCACGATTCCAATGCGAATCACTATATTCCCTCTCCCGTTGCGAGAACTCGAACATCCGTTGCTCTGTCATGCTTACGTCGTTCGATTGCTCTCTTACTTGGACCTCACCGCCGGAACCTGCGATATAATCGCTAAGGATATCACGTCTCTCGTTGGTGAGTTGTTGGCCGCCGGAAACTTCGAGGTTAAGTTCCGCATCGTGGCGTTAATCTATCATATCCAATTGTCCTGGGGTGACCAGATAGGTGAAAGCAGGCAAAGTGTTGCGGCGGAGCAGACGGTGATTTTGGAAGAAGCTCCGGCGAGGAAGACGGCGGCGGAGAAGGCGATTGAGAGGTTGAAGAGGGAGAAATTCGATGGGTTTGTGGGAGAAGAATTGGGAGATTGCTGTGTTTGTTACGAAGAATTGAAGGAAGGGGGGAAGGAGGTGAGTAGAATCGGGTGCGGTCATGTCTATCATAAGTCCTGTATTCTCACTTGGGTTCAAAGAAGTGATTCTTGTCCTTTGTGCAGAATGAAAATAGAATAA

Coding sequence (CDS)

ATGTCTTCTCTCGAAACCGCTTCTACCTTCCGCTTCAGTCTCCGCCGCCACGACGCCACCGACGATCAATCTCTCCTAATCCGATTGGGGTTTTCGCAACGTAAGCTCTCCCGATCGCCGTCCGCCGGACTTCCCTACCAAATCCTCCATGAATCTCCCACGATTCCAATGCGAATCACTATATTCCCTCTCCCGTTGCGAGAACTCGAACATCCGTTGCTCTGTCATGCTTACGTCGTTCGATTGCTCTCTTACTTGGACCTCACCGCCGGAACCTGCGATATAATCGCTAAGGATATCACGTCTCTCGTTGGTGAGTTGTTGGCCGCCGGAAACTTCGAGGTTAAGTTCCGCATCGTGGCGTTAATCTATCATATCCAATTGTCCTGGGGTGACCAGATAGGTGAAAGCAGGCAAAGTGTTGCGGCGGAGCAGACGGTGATTTTGGAAGAAGCTCCGGCGAGGAAGACGGCGGCGGAGAAGGCGATTGAGAGGTTGAAGAGGGAGAAATTCGATGGGTTTGTGGGAGAAGAATTGGGAGATTGCTGTGTTTGTTACGAAGAATTGAAGGAAGGGGGGAAGGAGGTGAGTAGAATCGGGTGCGGTCATGTCTATCATAAGTCCTGTATTCTCACTTGGGTTCAAAGAAGTGATTCTTGTCCTTTGTGCAGAATGAAAATAGAATAA

Protein sequence

MSSLETASTFRFSLRRHDATDDQSLLIRLGFSQRKLSRSPSAGLPYQILHESPTIPMRITIFPLPLRELEHPLLCHAYVVRLLSYLDLTAGTCDIIAKDITSLVGELLAAGNFEVKFRIVALIYHIQLSWGDQIGESRQSVAAEQTVILEEAPARKTAAEKAIERLKREKFDGFVGEELGDCCVCYEELKEGGKEVSRIGCGHVYHKSCILTWVQRSDSCPLCRMKIE
Homology
[Close]
BLAST of Cla017306 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-07
Identity = 27/75 (36.00%), Postives = 44/75 (58.67%), Query Frame = 1 

Query: 153 PARKTAAEKAIERLKREKFDGFVGEELGDCCVCYEELKEGGKEVSRIGCGHVYHKSCILT 212
           PA K+A + A+  +K  K    +  E+  C VC +E  E G +V ++ C HV+H+ C+L 
Sbjct: 190 PASKSAID-ALPTVKVTK--DMLKSEMNQCAVCMDEF-EDGSDVKQMPCKHVFHQDCLLP 249

Query: 213 WVQRSDSCPLCRMKI 228
           W++  +SCP+CR ++
Sbjct: 250 WLELHNSCPVCRFEL 260

[Close]
BLAST of Cla017306 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.1e-07
Identity = 27/75 (36.00%), Postives = 43/75 (57.33%), Query Frame = 1 

Query: 153 PARKTAAEKAIERLKREKFDGFVGEELGDCCVCYEELKEGGKEVSRIGCGHVYHKSCILT 212
           PA K+A E A+  +   K +  +  E   C VC ++ +EG  E  ++ C H+YHK C+L 
Sbjct: 198 PASKSAIE-ALPLVNITKSN--LNSEFNQCAVCMDDFEEG-TEAKQMPCKHLYHKDCLLP 257

Query: 213 WVQRSDSCPLCRMKI 228
           W++  +SCP+CR ++
Sbjct: 258 WLELHNSCPVCRHEL 268

[Close]
BLAST of Cla017306 vs. Swiss-Prot
Match: RN181_XENTR (E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 7.0e-07
Identity = 26/70 (37.14%), Postives = 40/70 (57.14%), Query Frame = 1 

Query: 158 AAEKAIERLKREKFDGFVGEELGDCCVCYEELKEGGKEVSRIGCGHVYHKSCILTWVQRS 217
           AA+K +E L +        +    C VC  E +EG + V ++ C H++H SCIL W+ ++
Sbjct: 55  AAKKVVESLPKVTVTPEQADAALKCPVCLLEFEEG-ETVRQLPCEHLFHSSCILPWLGKT 114

Query: 218 DSCPLCRMKI 228
           +SCPLCR ++
Sbjct: 115 NSCPLCRHEL 123

[Close]
BLAST of Cla017306 vs. Swiss-Prot
Match: MBR2_ARATH (E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana GN=MBR2 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 7.0e-07
Identity = 29/111 (26.13%), Postives = 53/111 (47.75%), Query Frame = 1 

Query: 114 EVKFRIVALIYHIQLSWGDQIGESRQSVAAEQTVILEEAPARKTAAEKAIERLKREKFDG 173
           +++  +  + Y   L+ G++IG+    ++ E  VIL+     K  +  A           
Sbjct: 564 DMRLDVDNMSYEELLALGERIGDVSTGLSEE--VILKVMKQHKHTSSAAGSH-------- 623

Query: 174 FVGEELGDCCVCYEELKEGGKEVSRIGCGHVYHKSCILTWVQRSDSCPLCR 225
              +++  CCVC EE  EG  ++  +GCGH +H +C+  W+   + CP+C+
Sbjct: 624 ---QDMEPCCVCQEEYAEGD-DLGTLGCGHEFHTACVKQWLMLKNLCPICK 660

[Close]
BLAST of Cla017306 vs. Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 7.0e-07
Identity = 26/71 (36.62%), Postives = 39/71 (54.93%), Query Frame = 1 

Query: 158 AAEKAIERLKREKFDGFVGEELGDCCVCYEELKEGGKEVSRIGCGHVYHKSCILTWVQRS 217
           AA+ AIE L+  +     GE +  C VC + +  G +   ++ CGH YH  CI+ W+   
Sbjct: 233 AAKSAIEALETFEVSSSEGEMVMVCAVCKDGMVMG-ETGKKLPCGHCYHGDCIVPWLGTR 292

Query: 218 DSCPLCRMKIE 229
           +SCP+CR ++E
Sbjct: 293 NSCPVCRFQLE 302

[Close]
BLAST of Cla017306 vs. TrEMBL
Match: A0A0A0L2F8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G036440 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.3e-28
Identity = 80/166 (48.19%), Postives = 106/166 (63.86%), Query Frame = 1 

Query: 4   LETASTFRFSLRRHDATDDQSLLIRLGFSQRKLSRSPSAGLPYQILHESPTIPMRITIFP 63
           LE+ASTFR+S+RR    + QSL IRLG   R LS SPSAGLPY+IL ES +IP+    FP
Sbjct: 3   LESASTFRYSIRRRCGVE-QSLQIRLGRIVRLLSGSPSAGLPYEILQESASIPVHEATFP 62

Query: 64  LPLRELEHPLLCHAYVVRLLSYLDLTAGTCDIIAKDITSLVGELLAAGNFEVKFRIVALI 123
           LPLR++E   LC  Y+++LLS  +L   T  II+K ITS+V E+L AG+++ KF +VA I
Sbjct: 63  LPLRDVEDSCLCEIYILQLLSSFNLGTVTSGIISKKITSMVVEVLGAGDYDAKFEMVAEI 122

Query: 124 YHIQL---------SW-GDQIGESRQSVAAEQTVILEEAPARKTAA 160
            HI++         SW G      R+ V  E+ V+LE  P R+ AA
Sbjct: 123 DHIRMYFWTEEEERSWVGRGNNSERRGVVVEERVVLEGVPGRRRAA 167

[Close]
BLAST of Cla017306 vs. TrEMBL
Match: A0A0A0K696_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.7e-28
Identity = 77/202 (38.12%), Postives = 117/202 (57.92%), Query Frame = 1 

Query: 25  LLIRLGFSQRKLSRSPSAGLPYQILHESPTIPMRITIFPLPLRELEHPLLCHAYVVRLLS 84
           L + + F Q+ +S SP  G P+++LH++P IP    +F L LR+L+ PL    Y+ ++LS
Sbjct: 24  LQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNALFYLSLRQLQSPLF---YITQILS 83

Query: 85  YLDLTAGTCDIIAKDITSLVGELLAAGNFEVKFRIVALIYHIQLSWGDQIGESRQSVAAE 144
            L++       +A+ I S + ++    N E  F I+A +  I+L W   +G       AE
Sbjct: 84  SLNIRPAASQNMARRIASHILQM-PDRNSETNFHILAEVDFIRLIWLPSMGGG--GAGAE 143

Query: 145 QTVILEEAP--ARKTAAEKAIERLKREKFDGFVGEELGDCCVCYEELKEGGKEVSRIGCG 204
           +TV+L+EAP   ++       ERL+ E+      EELGDC +C +EL    +EV RI CG
Sbjct: 144 ETVVLDEAPPAVKRGVGVARGERLRSEE----KMEELGDCSICLDELSCEKREVMRIPCG 203

Query: 205 HVYHKSCILTWVQRSDSCPLCR 225
           HVYH+SCI  W++  +SCPLCR
Sbjct: 204 HVYHESCIFKWLENHNSCPLCR 215

[Close]
BLAST of Cla017306 vs. TrEMBL
Match: A0A0A0K2W2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G025210 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.7e-28
Identity = 77/202 (38.12%), Postives = 117/202 (57.92%), Query Frame = 1 

Query: 25  LLIRLGFSQRKLSRSPSAGLPYQILHESPTIPMRITIFPLPLRELEHPLLCHAYVVRLLS 84
           L + + F Q+ +S SP  G P+++LH++P IP    +F L LR+L+ PL    Y+ ++LS
Sbjct: 24  LQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNALFYLSLRQLQSPLF---YITQILS 83

Query: 85  YLDLTAGTCDIIAKDITSLVGELLAAGNFEVKFRIVALIYHIQLSWGDQIGESRQSVAAE 144
            L++       +A+ I S + ++    N E  F I+A +  I+L W   +G       AE
Sbjct: 84  SLNIRPAASQNMARRIASHILQM-PDRNSETNFHILAEVDFIRLIWLPSMGGG--GAGAE 143

Query: 145 QTVILEEAP--ARKTAAEKAIERLKREKFDGFVGEELGDCCVCYEELKEGGKEVSRIGCG 204
           +TV+L+EAP   ++       ERL+ E+      EELGDC +C +EL    +EV RI CG
Sbjct: 144 ETVVLDEAPPAVKRGVGVARGERLRSEE----KMEELGDCSICLDELSCEKREVMRIPCG 203

Query: 205 HVYHKSCILTWVQRSDSCPLCR 225
           HVYH+SCI  W++  +SCPLCR
Sbjct: 204 HVYHESCIFKWLENHNSCPLCR 215

[Close]
BLAST of Cla017306 vs. TrEMBL
Match: A0A0A0LRB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.2e-28
Identity = 97/239 (40.59%), Postives = 133/239 (55.65%), Query Frame = 1 

Query: 3   SLETASTFRFSLRRHD----ATDDQSLL---IRLG-FSQRKLSRSPSAGLPYQILHESPT 62
           S  T  +FR S+R +     AT+ Q L    +RLG FSQ  LS S      +QIL ++  
Sbjct: 2   SSPTTFSFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPS------HQILQQTSP 61

Query: 63  IPMRITIFPLPLRELEHP-LLCHAYVVRLLSYLDLTAGTCDIIAKDITSLVGELLAAGNF 122
           I +  T+   PLRELE P  + H+ + R LS  +++   CD I   I+S   +L+A GN 
Sbjct: 62  ILISDTLIRFPLRELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVA-GNL 121

Query: 123 EVKFRIVALIYHIQLSWGDQIGESRQSVAAEQTVILEEAPARKTAAEKAIERLKREKFDG 182
              F I+A +  +   W D   +  +  AA           R+ A   AIERL +EK+DG
Sbjct: 122 NSNFHIIAALDFVYTHWVDL--DPAEDAAA----------VRQGAPRSAIERLMKEKYDG 181

Query: 183 FVGEELGD-CCVCYEELK---EGGKEVSRIGCGHVYHKSCILTWVQRSDSCPLCRMKIE 229
             GEE+ D C VCYE+L    E  KEVSRI CGH++HKSCIL W++ S+SCPLCR ++E
Sbjct: 182 NGGEEMEDECSVCYEDLHGKTEKEKEVSRIPCGHMFHKSCILKWLKISNSCPLCRGELE 221

[Close]
BLAST of Cla017306 vs. TrEMBL
Match: A0A0A0L3Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.2e-27
Identity = 96/246 (39.02%), Postives = 133/246 (54.07%), Query Frame = 1 

Query: 3   SLETASTFRFSLRRHD----ATDDQSL-LIRLGFSQ-RKLSRSPSAGLPYQILHESPTIP 62
           SL    +F+ S+RR+     ATD Q L  ++L      +L  +PS     QIL ++    
Sbjct: 2   SLPITFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQ----QILQQTSPTL 61

Query: 63  MRITIFPLPLRELEHP-LLCHAYVVRLLSYLDLTAGTCDIIAKDITSLVGELLAAG--NF 122
           +  T+ P  L ELE P  + + ++ R LS  D++A  CD I  +I+S  G++L A   N 
Sbjct: 62  ISDTLIPFSLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNI 121

Query: 123 EVKFRIVALIYHIQLSWGDQIGESRQSVAAEQTVILEEAPA-RKTAAEKAIERLKREKFD 182
            V F I+A +  +   W D                 E+APA RK A+   IER+ +EK+D
Sbjct: 122 NVNFHIIADVDIVYTHWVDLDPA-------------EDAPAVRKGASTSVIERVMKEKYD 181

Query: 183 GFVGEEL-GD--CCVCYEEL-------KEGGKEVSRIGCGHVYHKSCILTWVQRSDSCPL 229
           G  GEE  GD  C VCYE+L        E  KEVSRI CGH+YHKSCIL W++ S+SCPL
Sbjct: 182 GNGGEEKEGDDQCSVCYEQLYGKRENENEKEKEVSRIPCGHMYHKSCILKWLKISNSCPL 230

[Close]
BLAST of Cla017306 vs. NCBI nr
Match: gi|778688326|ref|XP_011652721.1| (PREDICTED: uncharacterized protein LOC105435064 [Cucumis sativus])

HSP 1 Score: 156.4 bits (394), Expect = 6.1e-35
Identity = 97/203 (47.78%), Postives = 126/203 (62.07%), Query Frame = 1 

Query: 4   LETASTFRFSLRRHDATDDQSLLIRLGFSQRKLSRSPSAGLPYQILHESPTIPMRITIFP 63
           LE+ASTFR+S+RR    + QSL IRLG   R LS SPSAGLPY+IL ES +IP+    FP
Sbjct: 3   LESASTFRYSIRRRCGVE-QSLQIRLGRIVRLLSGSPSAGLPYEILQESASIPVHEATFP 62

Query: 64  LPLRELEHPLLCHAYVVRLLSYLDLTAGTCDIIAKDITSLVGELLAAGNFEVKFRIVALI 123
           LPLR++E   LC  Y+++LLS  +L   T  II+K ITS+V E+L AG+++ KF +VA I
Sbjct: 63  LPLRDVEDSCLCEIYILQLLSSFNLGTVTSGIISKKITSMVVEVLGAGDYDAKFEMVAEI 122

Query: 124 YHIQL---------SW-GDQIGESRQSVAAEQTVILEEAPARKTAAEKAIERLKREKFDG 183
            HI++         SW G      R+ V  E+ V+LE  P R+   E+     +REK  G
Sbjct: 123 DHIRMYFWTEEEERSWVGRGNNSERRGVVVEERVVLEGVPGRRRERER-----EREKKGG 182

Query: 184 F-VGEELGDCCVCYEELKEGGKE 196
           F    ELGDC VC EELK+  KE
Sbjct: 183 FDERRELGDCSVCQEELKDVRKE 199

[Close]
BLAST of Cla017306 vs. NCBI nr
Match: gi|700200785|gb|KGN55918.1| (hypothetical protein Csa_3G036440 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 1.9e-28
Identity = 80/166 (48.19%), Postives = 106/166 (63.86%), Query Frame = 1 

Query: 4   LETASTFRFSLRRHDATDDQSLLIRLGFSQRKLSRSPSAGLPYQILHESPTIPMRITIFP 63
           LE+ASTFR+S+RR    + QSL IRLG   R LS SPSAGLPY+IL ES +IP+    FP
Sbjct: 3   LESASTFRYSIRRRCGVE-QSLQIRLGRIVRLLSGSPSAGLPYEILQESASIPVHEATFP 62

Query: 64  LPLRELEHPLLCHAYVVRLLSYLDLTAGTCDIIAKDITSLVGELLAAGNFEVKFRIVALI 123
           LPLR++E   LC  Y+++LLS  +L   T  II+K ITS+V E+L AG+++ KF +VA I
Sbjct: 63  LPLRDVEDSCLCEIYILQLLSSFNLGTVTSGIISKKITSMVVEVLGAGDYDAKFEMVAEI 122

Query: 124 YHIQL---------SW-GDQIGESRQSVAAEQTVILEEAPARKTAA 160
            HI++         SW G      R+ V  E+ V+LE  P R+ AA
Sbjct: 123 DHIRMYFWTEEEERSWVGRGNNSERRGVVVEERVVLEGVPGRRRAA 167

[Close]
BLAST of Cla017306 vs. NCBI nr
Match: gi|449454422|ref|XP_004144954.1| (PREDICTED: uncharacterized protein LOC101214496 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 2.5e-28
Identity = 77/202 (38.12%), Postives = 117/202 (57.92%), Query Frame = 1 

Query: 25  LLIRLGFSQRKLSRSPSAGLPYQILHESPTIPMRITIFPLPLRELEHPLLCHAYVVRLLS 84
           L + + F Q+ +S SP  G P+++LH++P IP    +F L LR+L+ PL    Y+ ++LS
Sbjct: 24  LQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNALFYLSLRQLQSPLF---YITQILS 83

Query: 85  YLDLTAGTCDIIAKDITSLVGELLAAGNFEVKFRIVALIYHIQLSWGDQIGESRQSVAAE 144
            L++       +A+ I S + ++    N E  F I+A +  I+L W   +G       AE
Sbjct: 84  SLNIRPAASQNMARRIASHILQM-PDRNSETNFHILAEVDFIRLIWLPSMGGG--GAGAE 143

Query: 145 QTVILEEAP--ARKTAAEKAIERLKREKFDGFVGEELGDCCVCYEELKEGGKEVSRIGCG 204
           +TV+L+EAP   ++       ERL+ E+      EELGDC +C +EL    +EV RI CG
Sbjct: 144 ETVVLDEAPPAVKRGVGVARGERLRSEE----KMEELGDCSICLDELSCEKREVMRIPCG 203

Query: 205 HVYHKSCILTWVQRSDSCPLCR 225
           HVYH+SCI  W++  +SCPLCR
Sbjct: 204 HVYHESCIFKWLENHNSCPLCR 215

[Close]
BLAST of Cla017306 vs. NCBI nr
Match: gi|778730084|ref|XP_011659694.1| (PREDICTED: uncharacterized protein LOC105436225 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 2.5e-28
Identity = 77/202 (38.12%), Postives = 117/202 (57.92%), Query Frame = 1 

Query: 25  LLIRLGFSQRKLSRSPSAGLPYQILHESPTIPMRITIFPLPLRELEHPLLCHAYVVRLLS 84
           L + + F Q+ +S SP  G P+++LH++P IP    +F L LR+L+ PL    Y+ ++LS
Sbjct: 24  LQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNALFYLSLRQLQSPLF---YITQILS 83

Query: 85  YLDLTAGTCDIIAKDITSLVGELLAAGNFEVKFRIVALIYHIQLSWGDQIGESRQSVAAE 144
            L++       +A+ I S + ++    N E  F I+A +  I+L W   +G       AE
Sbjct: 84  SLNIRPAASQNMARRIASHILQM-PDRNSETNFHILAEVDFIRLIWLPSMGGG--GAGAE 143

Query: 145 QTVILEEAP--ARKTAAEKAIERLKREKFDGFVGEELGDCCVCYEELKEGGKEVSRIGCG 204
           +TV+L+EAP   ++       ERL+ E+      EELGDC +C +EL    +EV RI CG
Sbjct: 144 ETVVLDEAPPAVKRGVGVARGERLRSEE----KMEELGDCSICLDELSCEKREVMRIPCG 203

Query: 205 HVYHKSCILTWVQRSDSCPLCR 225
           HVYH+SCI  W++  +SCPLCR
Sbjct: 204 HVYHESCIFKWLENHNSCPLCR 215

[Close]
BLAST of Cla017306 vs. NCBI nr
Match: gi|778674460|ref|XP_011650219.1| (PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 3.2e-28
Identity = 97/239 (40.59%), Postives = 133/239 (55.65%), Query Frame = 1 

Query: 3   SLETASTFRFSLRRHD----ATDDQSLL---IRLG-FSQRKLSRSPSAGLPYQILHESPT 62
           S  T  +FR S+R +     AT+ Q L    +RLG FSQ  LS S      +QIL ++  
Sbjct: 2   SSPTTFSFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPS------HQILQQTSP 61

Query: 63  IPMRITIFPLPLRELEHP-LLCHAYVVRLLSYLDLTAGTCDIIAKDITSLVGELLAAGNF 122
           I +  T+   PLRELE P  + H+ + R LS  +++   CD I   I+S   +L+A GN 
Sbjct: 62  ILISDTLIRFPLRELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVA-GNL 121

Query: 123 EVKFRIVALIYHIQLSWGDQIGESRQSVAAEQTVILEEAPARKTAAEKAIERLKREKFDG 182
              F I+A +  +   W D   +  +  AA           R+ A   AIERL +EK+DG
Sbjct: 122 NSNFHIIAALDFVYTHWVDL--DPAEDAAA----------VRQGAPRSAIERLMKEKYDG 181

Query: 183 FVGEELGD-CCVCYEELK---EGGKEVSRIGCGHVYHKSCILTWVQRSDSCPLCRMKIE 229
             GEE+ D C VCYE+L    E  KEVSRI CGH++HKSCIL W++ S+SCPLCR ++E
Sbjct: 182 NGGEEMEDECSVCYEDLHGKTEKEKEVSRIPCGHMFHKSCILKWLKISNSCPLCRGELE 221

The following BLAST results are available for this feature:
BLAST of Cla017306 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RNG1L_ARATH1.4e-0736.00E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1... [more]
RING1_GOSHI3.1e-0736.00E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1[more]
RN181_XENTR7.0e-0737.14E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181 PE=2 SV=1[more]
MBR2_ARATH7.0e-0726.13E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana GN=MBR2 PE=1 SV=1[more]
CIP8_ARATH7.0e-0736.62E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1[more]
BLAST of Cla017306 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2F8_CUCSA1.3e-2848.19Uncharacterized protein OS=Cucumis sativus GN=Csa_3G036440 PE=4 SV=1[more]
A0A0A0K696_CUCSA1.7e-2838.12Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1[more]
A0A0A0K2W2_CUCSA1.7e-2838.12Uncharacterized protein OS=Cucumis sativus GN=Csa_7G025210 PE=4 SV=1[more]
A0A0A0LRB0_CUCSA2.2e-2840.59Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1[more]
A0A0A0L3Z2_CUCSA3.2e-2739.02Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1[more]
BLAST of Cla017306 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778688326|ref|XP_011652721.1|6.1e-3547.78PREDICTED: uncharacterized protein LOC105435064 [Cucumis sativus][more]
gi|700200785|gb|KGN55918.1|1.9e-2848.19hypothetical protein Csa_3G036440 [Cucumis sativus][more]
gi|449454422|ref|XP_004144954.1|2.5e-2838.12PREDICTED: uncharacterized protein LOC101214496 [Cucumis sativus][more]
gi|778730084|ref|XP_011659694.1|2.5e-2838.12PREDICTED: uncharacterized protein LOC105436225 [Cucumis sativus][more]
gi|778674460|ref|XP_011650219.1|3.2e-2840.59PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0016874 ligase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU44562watermelon EST collection version 2.0transcribed_cluster
WMU72800watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla017306Cla017306.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU72800WMU72800transcribed_cluster
WMU44562WMU44562transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 181..224
score: 2.4
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 182..223
score: 7.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 182..224
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 180..225
score: 7.7
NoneNo IPR availableunknownCoilCoilcoord: 149..169
scor
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 158..228
score: 4.8
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 181..227
score: 7.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla017306Cla97C10G194810Watermelon (97103) v2wmwmbB051
Cla017306Csa3G680620Cucumber (Chinese Long) v2cuwmB193
Cla017306MELO3C024019Melon (DHL92) v3.5.1mewmB346
Cla017306Cucsa.192650Cucumber (Gy14) v1cgywmB370
Cla017306Lsi03G011720Bottle gourd (USVL1VR-Ls)lsiwmB240
Cla017306MELO3C024019.2Melon (DHL92) v3.6.1medwmB344
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla017306Wax gourdwgowmB007
Cla017306Wax gourdwgowmB594
Cla017306Watermelon (97103) v1wmwmB008
Cla017306Cucumber (Gy14) v1cgywmB214
Cla017306Cucurbita maxima (Rimu)cmawmB227
Cla017306Cucurbita maxima (Rimu)cmawmB336
Cla017306Cucurbita maxima (Rimu)cmawmB416
Cla017306Cucurbita maxima (Rimu)cmawmB862
Cla017306Cucurbita moschata (Rifu)cmowmB213
Cla017306Cucurbita moschata (Rifu)cmowmB331
Cla017306Cucurbita moschata (Rifu)cmowmB410
Cla017306Cucurbita moschata (Rifu)cmowmB849
Cla017306Wild cucumber (PI 183967)cpiwmB194
Cla017306Wild cucumber (PI 183967)cpiwmB593
Cla017306Melon (DHL92) v3.5.1mewmB215
Cla017306Watermelon (Charleston Gray)wcgwmB016
Cla017306Watermelon (Charleston Gray)wcgwmB051
Cla017306Cucumber (Chinese Long) v2cuwmB574
Cla017306Cucurbita pepo (Zucchini)cpewmB141
Cla017306Cucurbita pepo (Zucchini)cpewmB322
Cla017306Cucurbita pepo (Zucchini)cpewmB539
Cla017306Cucurbita pepo (Zucchini)cpewmB595
Cla017306Bottle gourd (USVL1VR-Ls)lsiwmB178
Cla017306Cucumber (Gy14) v2cgybwmB537
Cla017306Cucumber (Gy14) v2cgybwmB182
Cla017306Melon (DHL92) v3.6.1medwmB212
Cla017306Silver-seed gourdcarwmB0108
Cla017306Silver-seed gourdcarwmB0452
Cla017306Silver-seed gourdcarwmB0759
Cla017306Silver-seed gourdcarwmB0816
Cla017306Cucumber (Chinese Long) v3cucwmB203
Cla017306Cucumber (Chinese Long) v3cucwmB601
Cla017306Watermelon (97103) v2wmwmbB075