Cucsa.192650.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATATAGAAATAATAATAATCTTCCTTTTCAAAAAAGGAAAATAATTAAAAAAGTAGTTTCAATAAAGAAACTGATAAAAGTAGAAGAAAGCGAAAAGGAACAAAAACACATACCCAACAAAATAATAATAATTCCATAAACTAAACAATTTCCTAATCGGAACTTGATTACCATTCTTCCATTATAAATCTAATTAAATCCATAACTTCTTAGTTCTCTTCGTCTTAATTCCCACAATGTCTTCCTCCATACGCTTCACTCTCCGCCGCCACAACGTCAGGCACGATCAATCTCTCCAAAACCGAAACCCATCGAGGCTTCCACTTCCATCCGACGAACTTCCGTACAATATCCTCCATCTAATTAGGCGCCGTGTTATGGGGGAGGAAACGGTGATTCTGGAAGAAGATCCGGCGAGGAGAAGGGCGCGGGAGAAGGCGATTGAGAGGCTGACGATCAGCGAGAAAGATGATGGGTTGTTTGAGGGAGAAGAGTTGGGAGATTGTTGTATTTGTTGCGAAGAACTGAATGGAGGGGAGAAGAAGAAGGTTTGTAGAATCAAGTGCGGCCATGTCTATCATAGATGCTGTATACTCACTTGGGTTCGAACAAAACTTTCTTGTCCTTTGTGTAGAAGGAAAATATAG atatagaaataataataatCTTCCTTTTCAAAAAAGGAAAATAATTAAAAAAGTAGTTTCAATAAAGAAACTGATAAAAGTAGAAGAAAGCGAAAAGGAACAAAAACACATACCCAACAAAATAATAATAATTCCATAAACTAAACAATTTCCTAATCGGAACTTGATTACCATTCTTCCATTATAAATCTAATTAAATCCATAACTTCTTAGTTCTCTTCGTCTTAATTCCCACAATGTCTTCCTCCATACGCTTCACTCTCCGCCGCCACAACGTCAGGCACGATCAATCTCTCCAAAACCGAAACCCATCGAGGCTTCCACTTCCATCCGACGAACTTCCGTACAATATCCTCCATCTAATTAGGCGCCGTGTTATGGGGGAGGAAACGGTGATTCTGGAAGAAGATCCGGCGAGGAGAAGGGCGCGGGAGAAGGCGATTGAGAGGCTGACGATCAGCGAGAAAGATGATGGGTTGTTTGAGGGAGAAGAGTTGGGAGATTGTTGTATTTGTTGCGAAGAACTGAATGGAGGGGAGAAGAAGAAGGTTTGTAGAATCAAGTGCGGCCATGTCTATCATAGATGCTGTATACTCACTTGGGTTCGAACAAAACTTTCTTGTCCTTTGTGTAGAAGGAAAATATAG ATGTCTTCCTCCATACGCTTCACTCTCCGCCGCCACAACGTCAGGCACGATCAATCTCTCCAAAACCGAAACCCATCGAGGCTTCCACTTCCATCCGACGAACTTCCGTACAATATCCTCCATCTAATTAGGCGCCGTGTTATGGGGGAGGAAACGGTGATTCTGGAAGAAGATCCGGCGAGGAGAAGGGCGCGGGAGAAGGCGATTGAGAGGCTGACGATCAGCGAGAAAGATGATGGGTTGTTTGAGGGAGAAGAGTTGGGAGATTGTTGTATTTGTTGCGAAGAACTGAATGGAGGGGAGAAGAAGAAGGTTTGTAGAATCAAGTGCGGCCATGTCTATCATAGATGCTGTATACTCACTTGGGTTCGAACAAAACTTTCTTGTCCTTTGTGTAGAAGGAAAATATAG MSSSIRFTLRRHNVRHDQSLQNRNPSRLPLPSDELPYNILHLIRRRVMGEETVILEEDPARRRAREKAIERLTISEKDDGLFEGEELGDCCICCEELNGGEKKKVCRIKCGHVYHRCCILTWVRTKLSCPLCRRKI*
BLAST of Cucsa.192650.1 vs. Swiss-Prot
Match: ATL66_ARATH (RING-H2 finger protein ATL66 OS=Arabidopsis thaliana GN=ATL66 PE=2 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 9.3e-07 Identity = 26/54 (48.15%), Postives = 31/54 (57.41%), Query Frame = 1
BLAST of Cucsa.192650.1 vs. Swiss-Prot
Match: RNF13_RAT (E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13 PE=2 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 1.2e-06 Identity = 25/77 (32.47%), Postives = 45/77 (58.44%), Query Frame = 1
BLAST of Cucsa.192650.1 vs. Swiss-Prot
Match: RNF13_MOUSE (E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1 SV=2) HSP 1 Score: 54.3 bits (129), Expect = 1.2e-06 Identity = 25/77 (32.47%), Postives = 45/77 (58.44%), Query Frame = 1
BLAST of Cucsa.192650.1 vs. Swiss-Prot
Match: RHG1A_ARATH (Probable E3 ubiquitin-protein ligase RHG1A OS=Arabidopsis thaliana GN=RHG1A PE=2 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 1.6e-06 Identity = 33/125 (26.40%), Postives = 56/125 (44.80%), Query Frame = 1
BLAST of Cucsa.192650.1 vs. Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 2.7e-06 Identity = 28/70 (40.00%), Postives = 39/70 (55.71%), Query Frame = 1
BLAST of Cucsa.192650.1 vs. TrEMBL
Match: A0A0A0LER3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G680620 PE=4 SV=1) HSP 1 Score: 212.6 bits (540), Expect = 3.0e-52 Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 1
BLAST of Cucsa.192650.1 vs. TrEMBL
Match: A0A0A0LHS2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G130680 PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 6.7e-12 Identity = 44/82 (53.66%), Postives = 51/82 (62.20%), Query Frame = 1
BLAST of Cucsa.192650.1 vs. TrEMBL
Match: A0A0A0K2W2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G025210 PE=4 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11 Identity = 43/89 (48.31%), Postives = 53/89 (59.55%), Query Frame = 1
BLAST of Cucsa.192650.1 vs. TrEMBL
Match: A0A0A0K696_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11 Identity = 43/89 (48.31%), Postives = 53/89 (59.55%), Query Frame = 1
BLAST of Cucsa.192650.1 vs. TrEMBL
Match: A0A0A0KYC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G003650 PE=4 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 3.7e-10 Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 1
BLAST of Cucsa.192650.1 vs. TAIR10
Match: AT4G18110.1 (AT4G18110.1 RING/U-box superfamily protein) HSP 1 Score: 56.2 bits (134), Expect = 1.8e-08 Identity = 22/49 (44.90%), Postives = 33/49 (67.35%), Query Frame = 1
BLAST of Cucsa.192650.1 vs. TAIR10
Match: AT1G45180.1 (AT1G45180.1 RING/U-box superfamily protein) HSP 1 Score: 55.8 bits (133), Expect = 2.4e-08 Identity = 30/104 (28.85%), Postives = 53/104 (50.96%), Query Frame = 1
BLAST of Cucsa.192650.1 vs. TAIR10
Match: AT5G41440.1 (AT5G41440.1 RING/U-box superfamily protein) HSP 1 Score: 55.5 bits (132), Expect = 3.1e-08 Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 1
BLAST of Cucsa.192650.1 vs. TAIR10
Match: AT5G54990.1 (AT5G54990.1 RING/U-box superfamily protein) HSP 1 Score: 55.5 bits (132), Expect = 3.1e-08 Identity = 22/47 (46.81%), Postives = 31/47 (65.96%), Query Frame = 1
BLAST of Cucsa.192650.1 vs. TAIR10
Match: AT4G05350.1 (AT4G05350.1 RING/U-box superfamily protein) HSP 1 Score: 55.1 bits (131), Expect = 4.0e-08 Identity = 24/52 (46.15%), Postives = 32/52 (61.54%), Query Frame = 1
BLAST of Cucsa.192650.1 vs. NCBI nr
Match: gi|700203413|gb|KGN58546.1| (hypothetical protein Csa_3G680620 [Cucumis sativus]) HSP 1 Score: 212.6 bits (540), Expect = 4.3e-52 Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 1
BLAST of Cucsa.192650.1 vs. NCBI nr
Match: gi|659123912|ref|XP_008461900.1| (PREDICTED: RING-H2 finger protein ATL64-like [Cucumis melo]) HSP 1 Score: 147.9 bits (372), Expect = 1.3e-32 Identity = 82/145 (56.55%), Postives = 95/145 (65.52%), Query Frame = 1
BLAST of Cucsa.192650.1 vs. NCBI nr
Match: gi|659083325|ref|XP_008442291.1| (PREDICTED: RING finger protein 165-like [Cucumis melo]) HSP 1 Score: 95.5 bits (236), Expect = 7.6e-17 Identity = 52/109 (47.71%), Postives = 68/109 (62.39%), Query Frame = 1
BLAST of Cucsa.192650.1 vs. NCBI nr
Match: gi|659121671|ref|XP_008460768.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo]) HSP 1 Score: 85.5 bits (210), Expect = 7.9e-14 Identity = 49/103 (47.57%), Postives = 64/103 (62.14%), Query Frame = 1
BLAST of Cucsa.192650.1 vs. NCBI nr
Match: gi|659114890|ref|XP_008457277.1| (PREDICTED: RING finger protein 165-like [Cucumis melo]) HSP 1 Score: 79.3 bits (194), Expect = 5.7e-12 Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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