Cucsa.182170 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.182170
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Nuclear factor Y subunit C
Location	scaffold01251 : 250280 .. 253517 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTTTGTTTCCTTCCTTTTATTATAAGGTCAGTTTCTAACCAAAAACATATTCATTAATCTTTTCGAAAACACATAAAATCCTCTCTTTTATGAGAATCTCTTTGATTTTCTCTTCTTTTCTATTCTTCTTTTACGCTGACACAACCCCCCCAGAACAAATAACCAAAGAAAAAATGTAACTTTTGCATTTCAAACCCCAACTAACAAACCAAATTAGCTCAATTATGACATGGGTCATCTTCCATTCTTCCCCATAGATCTCTTTCTCATCGGTTTTCCCTTTTTCCCTTTCAGGGTATCTAAGATCTTGTTTACTTGAGTATCATTTGTGTCTCTAAAAGGTAATTAAACTCTCTCTCTCTCTCTCTCTTTCTTTGCTTGATCCTTAATATTTGTGGGATTTCTTTCTGGGTTTGTTTGTTTGTTTTGTTATTTGATTTGGTTGGTTGTGGAAATTAATGGTTCTTTTTTATATTGATGTTGGTGATCTTCATTTGTAATCAACACAGCTTTAAAATCTATAAGAAGATTGGTTCTTTCTCAACTGCTTCTTGGGTTTTTTCTTTCATATGTTTTAGCCTTTTAGCTGTGGATATGAATTAGCCTATGTTACATTTGGTTGAAAGTATAATATCAATTCCCTTTCCTCACATAATTTTGTATCTTCTCTACCTTTTTGATGAATTGCGTCTGAGGGAAAGTAAAGTAGGGGGAGTTTCTATAAGGTTTCTGGTTGTGTTTAGGATTTGTTTTGGTAGACCATTTAATCATGATGCATAATGTGATATAGGTCAGGAAGCACATAGATATAGATTCTTGAACATATGGACTTCTGTAGTTTCAGCTTTGAGAATCTTCTGTAATGGCTTGAAACAAGTACTGTGCTGTGAATTTTGTTCATGAAAATGTCTTTTGATACCTTCTGATATTTCATAAAAACTACATGGATTTTTTACTTCCTCCCGAGATCTATTGATTTTTGTTGAAATCTTACTTTGATCGATGATTACTCTCTATATGTGTGTTGAGTTTGTTTTGGACAATTCAGTTCATGAATATGTATGAATCGGTCATTCTGATAGGTTGATTTGTTGATAATTAGGTGAAAAGTGATATATATCATGGTTTCTATCTTGTTAAGGTTCTGGATTATAGATTTCTATTACCTTTCTTTTAGTATAGCTATTTTTCTTTGGTTCTTTTTCCCAGTTAAAAATGTTATTTTTGTTTCCATTTCTAAACCTGCTTCAATTTGCATCTTATTCTTGATTATATTTAATATTTATCTGTGTCGTGCACATAGTTTGAATATTCCGTTTGTTGTTCCTTTCAAAAGCTGTTCGAGATTTATTTCAAAGTTCAACCGTGATGGATCAGCAAGGGCATGGCCAGCCTCCATCCATGGGAGCGGTTGGCAGCGGAGGTCAGATAGCATATGGTAGCAATCTGTACCATCCCAACCAAATGTCTGTAGGTCCAACTTCGGGATCTGTCGTTACATCAGTCGGAGGCATTCAGTCTACGAGTCAACCTGGTGGAGCACAGCTTGCTCAACATCAACTTGCTTATCAACATATCCACCAGCAGCAGCAACAACAGCTTCAACAACAGCTCCAGACTTTTTGGGTAAATCAATACCAAGAGATTGAGAAGGTAACAGACTTCAAGAACCATAGTCTTCCCTTAGCAAGGATCAAGAAGATCATGAAGGCTGATGAGGATGTACGAATGATATCAGCTGAGGCACCTGTTTTATTTGCTAGGGCATGTGAAATGTTCATCCTGGAATTGACTTTACGGTCTTGGAATCACACCGAAGAGAACAAGCGCAGGACACTTCAAAAGAATGATATTGCTGCAGCTATCACAAGAACTGACATTTTCGACTTTCTGGTTGATATAGTGCCGAGGGAGGATTTGAAAGATGAAGTACTCACGTCGATTCCAAGAGGATCAATGACAGTTGGGGGACCTGGAGATACACTTCCTTACTACATGCCATCTCAGCATGCACCTCAGGTTGGGGCACCTGGAATGATCATGGGTAAGCCAGTTATGGACCCAGCTATGTATGCTCCACAATCACACCCTTATATGGCTCCACAAATGTGGCAGCATGCACAAGATCAAGCCCCTCCTGATCAATAATAGCTTGCTGCATGGAGGTGAAGGCGAACCGTACGTCTTTCTTTGTTCCTTTTGTTACATCTCTTTTATTCAAAATGAAAGTTCTGTGGTGGTATATATATAATGCTTTTTTTGGTCTACTATCTTCTAGTAGATTTCACGTTTCTGAGGTTGTGTTTATTCAGAATTCAGATTCATTTCAGTCTTCGTGATGCATATTTTGTTGAAAACATTGGCTGTAAAGTGCATTATGAGTGTATTATCTCAATCATATACGCAGCTTACAATTTCCCTCTGAGTTGGAGCTTTAAATAAACTCTAGTTCCGTGTTCCATTTAATGTGATTATATTTAGACGAGACATTTGGACAGTAGGGTCAGGTTTGTATACCAAAAGTTATATGTTTGGAGTGTCTATTTCGTTTGTAAAGATTGGAGTTGACAATCCATGTTTATATTTGGTATTTGTGTATCTTAGACTATGAATTAAATCTGTGATACTAAGAACTGCATAAAACCCAACTTCTGAAGAAAAAAAAAAACCCTTTTAAGCTACAAGCTAACTTTTGTAATCACAATCCAACAAAATCGATGTTGAACCACGAGCTGTATGAGCTTTATACTGCAAAAACATCTCGTACCTTGTAACATTTCACAGTGGACTATCCAAACCTTGGCCTCTCAACTCTTGGTTACACAAATTCAAACTTTCAAGCTCATGAATCGAACACCTTCATAAATGGCCTCGTAGTTGGATTTTAGATTTCCATTTGGCCTATACTCACCATTTTCCTGTCAATTATTGCAGACGGAGTCGCCTCCAAAGCAAGCTCTATGAAGCCAAACCACACACACACAACAAACTGAAAGGAGAATTTACACTGAAGATTTGATCTGAAGCCCTACACTATACTTTCTGTAGATATTTTGCTTGACAAGATTCGATAATCGTGATTGAGCAAGAAAAAGTCTCTTCTTTTTCTATTCATGCTTTACTTCTATTCTGATATTGGGAAGGACAGTTGACAAATTGTATAACTTCATATGATACTCCA

mRNA sequence

tttctttgtttccttccttttATTATAAGGTCAGTTTCTAACCAAAAACATATTCATTAATCTTTTCGAAAACACATAAAATCCTCTCTTTTATGAGAATCTCTTTGATTTTCTCTTCTTTTCTATTCTTCTTTTACGCTGACACAACCCCCCCAGAACAAATAACCAAAGAAAAAATGTAACTTTTGCATTTCAAACCCCAACTAACAAACCAAATTAGCTCAATTATGACATGGGTCATCTTCCATTCTTCCCCATAGATCTCTTTCTCATCGGTTTTCCCTTTTTCCCTTTCAGGGTATCTAAGATCTTGTTTACTTGAGTATCATTTGTGTCTCTAAAAGCTGTTCGAGATTTATTTCAAAGTTCAACCGTGATGGATCAGCAAGGGCATGGCCAGCCTCCATCCATGGGAGCGGTTGGCAGCGGAGGTCAGATAGCATATGGTAGCAATCTGTACCATCCCAACCAAATGTCTGTAGGTCCAACTTCGGGATCTGTCGTTACATCAGTCGGAGGCATTCAGTCTACGAGTCAACCTGGTGGAGCACAGCTTGCTCAACATCAACTTGCTTATCAACATATCCACCAGCAGCAGCAACAACAGCTTCAACAACAGCTCCAGACTTTTTGGGTAAATCAATACCAAGAGATTGAGAAGGTAACAGACTTCAAGAACCATAGTCTTCCCTTAGCAAGGATCAAGAAGATCATGAAGGCTGATGAGGATGTACGAATGATATCAGCTGAGGCACCTGTTTTATTTGCTAGGGCATGTGAAATGTTCATCCTGGAATTGACTTTACGGTCTTGGAATCACACCGAAGAGAACAAGCGCAGGACACTTCAAAAGAATGATATTGCTGCAGCTATCACAAGAACTGACATTTTCGACTTTCTGGTTGATATAGTGCCGAGGGAGGATTTGAAAGATGAAGTACTCACGTCGATTCCAAGAGGATCAATGACAGTTGGGGGACCTGGAGATACACTTCCTTACTACATGCCATCTCAGCATGCACCTCAGGTTGGGGCACCTGGAATGATCATGGGTAAGCCAGTTATGGACCCAGCTATGTATGCTCCACAATCACACCCTTATATGGCTCCACAAATGTGGCAGCATGCACAAGATCAAGCCCCTCCTGATCAATAATAGCTTGCTGCATGGAGGTGAAGGCGAACCACGGAGTCGCCTCCAAAGCAAGCTCTATGAAGCCAAACCACACACACACAACAAACTGAAAGGAGAATTTACACTGAAGATTTGATCTGAAGCCCTACACTATACTTTCTGTAGATATTTTGCTTGACAAGATTCGATAATCGTGATTGAGCAAGAAAAAGTCTCTTCTTTTTCTATTCATGCTTTACTTCTATTCTGATATTGGGAAGGACAGTTGACAAATTGTATAACTTCATATGATACTCCA

Coding sequence (CDS)

ATGGATCAGCAAGGGCATGGCCAGCCTCCATCCATGGGAGCGGTTGGCAGCGGAGGTCAGATAGCATATGGTAGCAATCTGTACCATCCCAACCAAATGTCTGTAGGTCCAACTTCGGGATCTGTCGTTACATCAGTCGGAGGCATTCAGTCTACGAGTCAACCTGGTGGAGCACAGCTTGCTCAACATCAACTTGCTTATCAACATATCCACCAGCAGCAGCAACAACAGCTTCAACAACAGCTCCAGACTTTTTGGGTAAATCAATACCAAGAGATTGAGAAGGTAACAGACTTCAAGAACCATAGTCTTCCCTTAGCAAGGATCAAGAAGATCATGAAGGCTGATGAGGATGTACGAATGATATCAGCTGAGGCACCTGTTTTATTTGCTAGGGCATGTGAAATGTTCATCCTGGAATTGACTTTACGGTCTTGGAATCACACCGAAGAGAACAAGCGCAGGACACTTCAAAAGAATGATATTGCTGCAGCTATCACAAGAACTGACATTTTCGACTTTCTGGTTGATATAGTGCCGAGGGAGGATTTGAAAGATGAAGTACTCACGTCGATTCCAAGAGGATCAATGACAGTTGGGGGACCTGGAGATACACTTCCTTACTACATGCCATCTCAGCATGCACCTCAGGTTGGGGCACCTGGAATGATCATGGGTAAGCCAGTTATGGACCCAGCTATGTATGCTCCACAATCACACCCTTATATGGCTCCACAAATGTGGCAGCATGCACAAGATCAAGCCCCTCCTGATCAATAA

Protein sequence

MDQQGHGQPPSMGAVGSGGQIAYGSNLYHPNQMSVGPTSGSVVTSVGGIQSTSQPGGAQLAQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGSMTVGGPGDTLPYYMPSQHAPQVGAPGMIMGKPVMDPAMYAPQSHPYMAPQMWQHAQDQAPPDQ*

Homology

[Close]

BLAST of Cucsa.182170 vs. Swiss-Prot
Match: NFYC9_ARATH (Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 2.3e-75
Identity = 165/262 (62.98%), Postives = 182/262 (69.47%), Query Frame = 1


Query: 1   MDQQGHGQPPSMGAVGSGGQIAYGSNLYHPNQMSVGPTSGSVVTSVGGIQSTSQPGGAQL 60
           MDQQ HGQ          G + YG+N Y  N MS      +  T  GG    +QPG    
Sbjct: 1   MDQQDHGQ---------SGAMNYGTNPYQTNPMST-----TAATVAGG---AAQPG---- 60

Query: 61  AQHQLAYQHIHQQQQQQ-LQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDV 120
              QLA+  IHQQQQQQ L QQLQ FW NQ++EIEK TDFKNHSLPLARIKKIMKADEDV
Sbjct: 61  ---QLAFHQIHQQQQQQQLAQQLQAFWENQFKEIEKTTDFKNHSLPLARIKKIMKADEDV 120

Query: 121 RMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 180
           RMISAEAPV+FARACEMFILELTLRSWNHTEENKRRTLQKNDIAAA+TRTDIFDFLVDIV
Sbjct: 121 RMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIV 180

Query: 181 PREDLKDEVLTSIPRGSMTVGGPGDTLPYYMPSQHAPQVGAPGMIMGKPVMDPAMYAPQS 240
           PREDL+DEVL SIPRG++           Y+P+  AP +G PGM+MG P      Y P  
Sbjct: 181 PREDLRDEVLGSIPRGTVPEAAAAGYPYGYLPAGTAP-IGNPGMVMGNP---GGAYPP-- 229

Query: 241 HPYMAPQMWQHAQDQAP--PDQ 260
           +PYM   MW   Q QAP  PDQ
Sbjct: 241 NPYMGQPMW---QQQAPDQPDQ 229

[Close]

BLAST of Cucsa.182170 vs. Swiss-Prot
Match: NFYC3_ARATH (Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana GN=NFYC3 PE=2 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 8.6e-70
Identity = 149/249 (59.84%), Postives = 165/249 (66.27%), Query Frame = 1


Query: 12  MGAVGSGGQIAYGSNLYHPNQMSVGPTSGSVVTSVGGIQSTSQPGGAQLAQHQLAYQHIH 71
           M   G    + YGSN Y  N M+  PT                           AY  IH
Sbjct: 1   MDQQGQSSAMNYGSNPYQTNAMTTTPTGSD----------------------HPAYHQIH 60

Query: 72  QQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFA 131
           QQQQQQL QQLQ+FW  Q++EIEK TDFKNHSLPLARIKKIMKADEDVRMISAEAPV+FA
Sbjct: 61  QQQQQQLTQQLQSFWETQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFA 120

Query: 132 RACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTS 191
           RACEMFILELTLRSWNHTEENKRRTLQKNDIAAA+TRTDIFDFLVDIVPREDL+DEVL  
Sbjct: 121 RACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLGG 180

Query: 192 IPRGSMTVGGPGDTLPY-YMPSQHAPQVGAPGMIMGKPVMDPAMYAPQSHPYMAPQMWQH 251
           +   + T  G     PY Y+P   AP +G PGM+MG    +P  Y P  +PYM   MWQ 
Sbjct: 181 VGAEAATAAG----YPYGYLPPGTAP-IGNPGMVMG----NPGAYPP--NPYMGQPMWQQ 216

Query: 252 -AQDQAPPD 259
              +Q  PD
Sbjct: 241 PGPEQQDPD 216

[Close]

BLAST of Cucsa.182170 vs. Swiss-Prot
Match: NFYC1_ARATH (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 9.9e-58
Identity = 123/219 (56.16%), Postives = 145/219 (66.21%), Query Frame = 1


Query: 31  NQMSVGPTSGSVVTSVGGIQSTSQPGGAQLAQHQLAYQHIHQQQQQQLQQQLQTFWVNQY 90
           N     P++  +     G   ++  GGA       +Y H+ QQQQQQLQ     FW  Q 
Sbjct: 4   NNQQPPPSAAGIPPPPPGTTISAAGGGA-------SYHHLLQQQQQQLQ----LFWTYQR 63

Query: 91  QEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTE 150
           QEIE+V DFKNH LPLARIKKIMKADEDVRMISAEAP+LFA+ACE+FILELT+RSW H E
Sbjct: 64  QEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAE 123

Query: 151 ENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGSMTVGGPGDTLPYYM 210
           ENKRRTLQKNDIAAAITRTDIFDFLVDIVPR+++KDE   ++  G M V      +PYY 
Sbjct: 124 ENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDE--AAVLGGGMVVAPTASGVPYYY 183

Query: 211 PSQHAPQVGAPGMIMGKPVMDPAMYAPQSHPYMAPQMWQ 250
           P    P  G  GM++G+P MDP     Q        +WQ
Sbjct: 184 PPMGQP-AGPGGMMIGRPAMDPNGVYVQPPSQAWQSVWQ 208

[Close]

BLAST of Cucsa.182170 vs. Swiss-Prot
Match: NFYC4_ARATH (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.7e-57
Identity = 129/232 (55.60%), Postives = 149/232 (64.22%), Query Frame = 1


Query: 25  SNLYHPNQMSVGPTSGSVVTSV----GGIQSTSQPGGAQLAQHQLAYQHIHQQQQQQLQQ 84
           +N   P   SV P   +V T +     G  S    GGA        Y H+ QQQQQQLQ 
Sbjct: 7   NNNQQPPPTSVYPPGSAVTTVIPPPPSGSASIVTGGGA-------TYHHLLQQQQQQLQM 66

Query: 85  QLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILE 144
               FW  Q QEIE+V DFKNH LPLARIKKIMKADEDVRMISAEAP+LFA+ACE+FILE
Sbjct: 67  ----FWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILE 126

Query: 145 LTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEV-LTSIPRGSMTV 204
           LT+RSW H EENKRRTLQKNDIAAAITRTDIFDFLVDIVPRE++K+E    S   G   V
Sbjct: 127 LTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEEDAASALGGGGMV 186

Query: 205 GGPGDTLPYYMPSQHAPQVGAPGMIMGKPVMDPAMYAPQSHPYMAPQMWQHA 252
                 +PYY P    P V   GM++G+P MDP+    Q        +WQ++
Sbjct: 187 APAASGVPYYYPPMGQPAVPG-GMMIGRPAMDPSGVYAQPPSQAWQSVWQNS 226

[Close]

BLAST of Cucsa.182170 vs. Swiss-Prot
Match: NFYC2_ARATH (Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana GN=NFYC2 PE=2 SV=2)

HSP 1 Score: 213.8 bits (543), Expect = 2.3e-54
Identity = 116/177 (65.54%), Postives = 130/177 (73.45%), Query Frame = 1


Query: 54  QPGGAQLAQHQLAYQ--HIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKK 113
           Q G    A H    Q  H H   QQQ QQQLQ FW NQ QEIE  TDFKNH+LPLARIKK
Sbjct: 25  QSGPVNAASHMAFQQAHHFHHHHQQQQQQQLQMFWANQMQEIEHTTDFKNHTLPLARIKK 84

Query: 114 IMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDI 173
           IMKADEDVRMISAEAPV+FA+ACEMFILELTLR+W HTEENKRRTLQKNDIAAAI+RTD+
Sbjct: 85  IMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKNDIAAAISRTDV 144

Query: 174 FDFLVDIVPREDLKDEVLTSIPRGSM--TVGGPGDTLPYYM-----PSQHAPQVGAP 222
           FDFLVDI+PR++LK+E L  + +G++   VG P    PYY        QH PQ   P
Sbjct: 145 FDFLVDIIPRDELKEEGL-GVTKGTIPSVVGSP----PYYYLQQQGMMQHWPQEQHP 196

[Close]

BLAST of Cucsa.182170 vs. TrEMBL
Match: A0A0A0LW22_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G570150 PE=4 SV=1)

HSP 1 Score: 532.3 bits (1370), Expect = 3.2e-148
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 1


Query: 1   MDQQGHGQPPSMGAVGSGGQIAYGSNLYHPNQMSVGPTSGSVVTSVGGIQSTSQPGGAQL 60
           MDQQGHGQPPSMGAVGSGGQIAYGSNLYHPNQMSVGPTSGSVVTSVGGIQSTSQPGGAQL
Sbjct: 1   MDQQGHGQPPSMGAVGSGGQIAYGSNLYHPNQMSVGPTSGSVVTSVGGIQSTSQPGGAQL 60

Query: 61  AQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVR 120
           AQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVR
Sbjct: 61  AQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVR 120

Query: 121 MISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 180
           MISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP
Sbjct: 121 MISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 180

Query: 181 REDLKDEVLTSIPRGSMTVGGPGDTLPYYMPSQHAPQVGAPGMIMGKPVMDPAMYAPQSH 240
           REDLKDEVLTSIPRGSMTVGGPGDTLPYYMPSQHAPQVGAPGMIMGKPVMDPAMYAPQSH
Sbjct: 181 REDLKDEVLTSIPRGSMTVGGPGDTLPYYMPSQHAPQVGAPGMIMGKPVMDPAMYAPQSH 240

Query: 241 PYMAPQMWQHAQDQAPPDQ 260
           PYMAPQMWQHAQDQAPPDQ
Sbjct: 241 PYMAPQMWQHAQDQAPPDQ 259

[Close]

BLAST of Cucsa.182170 vs. TrEMBL
Match: A0A0B0N3J4_GOSAR (Nuclear transcription factor Y subunit C-9-like protein OS=Gossypium arboreum GN=F383_09501 PE=4 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 2.4e-119
Identity = 212/254 (83.46%), Postives = 223/254 (87.80%), Query Frame = 1


Query: 1   MDQQGHGQPPSMGAVGSGGQIAYGSNLYHPNQMSVGPTSGSVVTSVGGIQSTSQPGGAQL 60
           MDQQGHGQPP+MG +GSGGQ+ YG+N Y        P  GSVVTSVGGIQST QP GAQL
Sbjct: 1   MDQQGHGQPPAMGMMGSGGQVPYGTNPYQNQVTGTAPNPGSVVTSVGGIQSTGQPTGAQL 60

Query: 61  AQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVR 120
           AQHQLAYQ IH QQQQQLQQQLQ FW NQYQEIEKVTDFKNH+LPLARIKKIMKADEDVR
Sbjct: 61  AQHQLAYQQIHHQQQQQLQQQLQAFWANQYQEIEKVTDFKNHNLPLARIKKIMKADEDVR 120

Query: 121 MISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 180
           MISAEAPV+FARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP
Sbjct: 121 MISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 180

Query: 181 REDLKDEVLTSIPRGSMTVGGPGDTLPYYMPSQHAPQVGAPGMIMGKPVMDPAMYAPQSH 240
           REDLKDEVL SIPRG+M VGGP D L YYMP+QHAPQVG PGMIMGKPV+DPA+YA QSH
Sbjct: 181 REDLKDEVLASIPRGTMPVGGPADALSYYMPAQHAPQVGTPGMIMGKPVVDPAIYAQQSH 240

Query: 241 PYMAPQMWQHAQDQ 255
           PYMA QMW    +Q
Sbjct: 241 PYMAQQMWPPGPEQ 254

[Close]

BLAST of Cucsa.182170 vs. TrEMBL
Match: A0A0D2N311_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G242200 PE=4 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 2.4e-119
Identity = 212/254 (83.46%), Postives = 223/254 (87.80%), Query Frame = 1


Query: 1   MDQQGHGQPPSMGAVGSGGQIAYGSNLYHPNQMSVGPTSGSVVTSVGGIQSTSQPGGAQL 60
           MDQQGHGQPP+MG +GSGGQ+ YG+N Y        P  GSVVTSVGGIQST QP GAQL
Sbjct: 1   MDQQGHGQPPAMGMMGSGGQVPYGTNPYQNQVTGTAPNPGSVVTSVGGIQSTGQPTGAQL 60

Query: 61  AQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVR 120
           AQHQLAYQ IH QQQQQLQQQLQ FW NQYQEIEKVTDFKNH+LPLARIKKIMKADEDVR
Sbjct: 61  AQHQLAYQQIHHQQQQQLQQQLQAFWANQYQEIEKVTDFKNHNLPLARIKKIMKADEDVR 120

Query: 121 MISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 180
           MISAEAPV+FARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP
Sbjct: 121 MISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 180

Query: 181 REDLKDEVLTSIPRGSMTVGGPGDTLPYYMPSQHAPQVGAPGMIMGKPVMDPAMYAPQSH 240
           REDLKDEVL SIPRG+M VGGP D L YYMP+QHAPQVG PGMIMGKPV+DPA+YA QSH
Sbjct: 181 REDLKDEVLASIPRGTMPVGGPADALSYYMPAQHAPQVGTPGMIMGKPVVDPAIYAQQSH 240

Query: 241 PYMAPQMWQHAQDQ 255
           PYMA QMW    +Q
Sbjct: 241 PYMAQQMWPPGPEQ 254

[Close]

BLAST of Cucsa.182170 vs. TrEMBL
Match: M5W0Q0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010147mg PE=4 SV=1)

HSP 1 Score: 433.0 bits (1112), Expect = 2.7e-118
Identity = 215/261 (82.38%), Postives = 227/261 (86.97%), Query Frame = 1


Query: 1   MDQQGHGQPPSMGAVGSGGQIAYGSNLYHPNQMSVGPTSGSVVTSVGGIQSTSQPGGAQL 60
           MD QGH QP SMG VGSG Q+ YG+N Y  NQM   P  GSV  +VG IQSTSQ  GAQL
Sbjct: 1   MDPQGHNQPQSMGMVGSGAQLTYGTNPYQHNQMVGSPNPGSVAGTVGAIQSTSQSAGAQL 60

Query: 61  AQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVR 120
           AQHQLAYQHIH QQQQQLQQQLQ+FW NQYQEI+KVTDFKNHSLPLARIKKIMKADEDVR
Sbjct: 61  AQHQLAYQHIHHQQQQQLQQQLQSFWANQYQEIDKVTDFKNHSLPLARIKKIMKADEDVR 120

Query: 121 MISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 180
           MISAEAPV+FARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP
Sbjct: 121 MISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 180

Query: 181 REDLKDEVLTSIPRGSMTVGGPGDTLPY-YMPSQHAPQVGAPGMIMGKPVMDPAMYAPQS 240
           REDLKDEVL SIPRG+++VGGPGD LPY YMP QHAPQVGAPGMIMGKP+MDP+MYA QS
Sbjct: 181 REDLKDEVLASIPRGTVSVGGPGDALPYCYMPPQHAPQVGAPGMIMGKPMMDPSMYAQQS 240

Query: 241 HPYMAPQMWQHA--QDQAPPD 259
           HPYM   MWQ A  Q Q+P D
Sbjct: 241 HPYMGQPMWQQAPEQQQSPSD 261

[Close]

BLAST of Cucsa.182170 vs. TrEMBL
Match: G7KYQ4_MEDTR (Nuclear transcription factor Y protein OS=Medicago truncatula GN=MTR_7g113680 PE=4 SV=1)

HSP 1 Score: 429.1 bits (1102), Expect = 3.8e-117
Identity = 214/258 (82.95%), Postives = 222/258 (86.05%), Query Frame = 1


Query: 1   MDQQGHGQPPSMGAVGSGGQIAYGSNLYHPNQMSVGPTSGSVVTSVGGIQSTSQPGGAQL 60
           MD QGH Q P MG VGSG Q+ YGSN Y  NQM+  P  GSVVTSVGG+QST QP GAQL
Sbjct: 52  MDHQGHNQNPQMGVVGSGSQMPYGSNPYQSNQMTGAP--GSVVTSVGGMQSTGQPAGAQL 111

Query: 61  AQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVR 120
            QHQLAYQHIHQQQQQQLQQQLQ+FW NQYQEIEKVTDFKNHSLPLARIKKIMKADEDVR
Sbjct: 112 GQHQLAYQHIHQQQQQQLQQQLQSFWSNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVR 171

Query: 121 MISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 180
           MISAEAPV+FARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP
Sbjct: 172 MISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 231

Query: 181 REDLKDEVLTSIPRGSMTVGGPGDTLPY-YMPSQHAPQVGAPGMIMGKPVMDPAMYAPQS 240
           REDLKDEVL SIPRG+M V GP D LPY YMP QHA QVG  G+IMGKPVMDP MYA Q 
Sbjct: 232 REDLKDEVLASIPRGTMPVAGPADALPYCYMPPQHASQVGTAGVIMGKPVMDPNMYAQQP 291

Query: 241 HPYMAPQMWQHAQDQAPP 258
           HPYMAPQMW    +Q PP
Sbjct: 292 HPYMAPQMWPQPPEQRPP 307

[Close]

BLAST of Cucsa.182170 vs. TAIR10
Match: AT1G08970.4 (AT1G08970.4 nuclear factor Y, subunit C9)

HSP 1 Score: 283.5 bits (724), Expect = 1.3e-76
Identity = 165/262 (62.98%), Postives = 182/262 (69.47%), Query Frame = 1


Query: 1   MDQQGHGQPPSMGAVGSGGQIAYGSNLYHPNQMSVGPTSGSVVTSVGGIQSTSQPGGAQL 60
           MDQQ HGQ          G + YG+N Y  N MS      +  T  GG    +QPG    
Sbjct: 1   MDQQDHGQ---------SGAMNYGTNPYQTNPMST-----TAATVAGG---AAQPG---- 60

Query: 61  AQHQLAYQHIHQQQQQQ-LQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDV 120
              QLA+  IHQQQQQQ L QQLQ FW NQ++EIEK TDFKNHSLPLARIKKIMKADEDV
Sbjct: 61  ---QLAFHQIHQQQQQQQLAQQLQAFWENQFKEIEKTTDFKNHSLPLARIKKIMKADEDV 120

Query: 121 RMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 180
           RMISAEAPV+FARACEMFILELTLRSWNHTEENKRRTLQKNDIAAA+TRTDIFDFLVDIV
Sbjct: 121 RMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIV 180

Query: 181 PREDLKDEVLTSIPRGSMTVGGPGDTLPYYMPSQHAPQVGAPGMIMGKPVMDPAMYAPQS 240
           PREDL+DEVL SIPRG++           Y+P+  AP +G PGM+MG P      Y P  
Sbjct: 181 PREDLRDEVLGSIPRGTVPEAAAAGYPYGYLPAGTAP-IGNPGMVMGNP---GGAYPP-- 229

Query: 241 HPYMAPQMWQHAQDQAP--PDQ 260
           +PYM   MW   Q QAP  PDQ
Sbjct: 241 NPYMGQPMW---QQQAPDQPDQ 229

[Close]

BLAST of Cucsa.182170 vs. TAIR10
Match: AT1G54830.2 (AT1G54830.2 nuclear factor Y, subunit C3)

HSP 1 Score: 265.0 bits (676), Expect = 4.9e-71
Identity = 149/249 (59.84%), Postives = 165/249 (66.27%), Query Frame = 1


Query: 12  MGAVGSGGQIAYGSNLYHPNQMSVGPTSGSVVTSVGGIQSTSQPGGAQLAQHQLAYQHIH 71
           M   G    + YGSN Y  N M+  PT                           AY  IH
Sbjct: 1   MDQQGQSSAMNYGSNPYQTNAMTTTPTGSD----------------------HPAYHQIH 60

Query: 72  QQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFA 131
           QQQQQQL QQLQ+FW  Q++EIEK TDFKNHSLPLARIKKIMKADEDVRMISAEAPV+FA
Sbjct: 61  QQQQQQLTQQLQSFWETQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFA 120

Query: 132 RACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTS 191
           RACEMFILELTLRSWNHTEENKRRTLQKNDIAAA+TRTDIFDFLVDIVPREDL+DEVL  
Sbjct: 121 RACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLGG 180

Query: 192 IPRGSMTVGGPGDTLPY-YMPSQHAPQVGAPGMIMGKPVMDPAMYAPQSHPYMAPQMWQH 251
           +   + T  G     PY Y+P   AP +G PGM+MG    +P  Y P  +PYM   MWQ 
Sbjct: 181 VGAEAATAAG----YPYGYLPPGTAP-IGNPGMVMG----NPGAYPP--NPYMGQPMWQQ 216

Query: 252 -AQDQAPPD 259
              +Q  PD
Sbjct: 241 PGPEQQDPD 216

[Close]

BLAST of Cucsa.182170 vs. TAIR10
Match: AT3G48590.1 (AT3G48590.1 nuclear factor Y, subunit C1)

HSP 1 Score: 224.9 bits (572), Expect = 5.6e-59
Identity = 123/219 (56.16%), Postives = 145/219 (66.21%), Query Frame = 1


Query: 31  NQMSVGPTSGSVVTSVGGIQSTSQPGGAQLAQHQLAYQHIHQQQQQQLQQQLQTFWVNQY 90
           N     P++  +     G   ++  GGA       +Y H+ QQQQQQLQ     FW  Q 
Sbjct: 4   NNQQPPPSAAGIPPPPPGTTISAAGGGA-------SYHHLLQQQQQQLQ----LFWTYQR 63

Query: 91  QEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTE 150
           QEIE+V DFKNH LPLARIKKIMKADEDVRMISAEAP+LFA+ACE+FILELT+RSW H E
Sbjct: 64  QEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAE 123

Query: 151 ENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGSMTVGGPGDTLPYYM 210
           ENKRRTLQKNDIAAAITRTDIFDFLVDIVPR+++KDE   ++  G M V      +PYY 
Sbjct: 124 ENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDE--AAVLGGGMVVAPTASGVPYYY 183

Query: 211 PSQHAPQVGAPGMIMGKPVMDPAMYAPQSHPYMAPQMWQ 250
           P    P  G  GM++G+P MDP     Q        +WQ
Sbjct: 184 PPMGQP-AGPGGMMIGRPAMDPNGVYVQPPSQAWQSVWQ 208

[Close]

BLAST of Cucsa.182170 vs. TAIR10
Match: AT5G63470.1 (AT5G63470.1 nuclear factor Y, subunit C4)

HSP 1 Score: 224.2 bits (570), Expect = 9.5e-59
Identity = 129/232 (55.60%), Postives = 149/232 (64.22%), Query Frame = 1


Query: 25  SNLYHPNQMSVGPTSGSVVTSV----GGIQSTSQPGGAQLAQHQLAYQHIHQQQQQQLQQ 84
           +N   P   SV P   +V T +     G  S    GGA        Y H+ QQQQQQLQ 
Sbjct: 7   NNNQQPPPTSVYPPGSAVTTVIPPPPSGSASIVTGGGA-------TYHHLLQQQQQQLQM 66

Query: 85  QLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILE 144
               FW  Q QEIE+V DFKNH LPLARIKKIMKADEDVRMISAEAP+LFA+ACE+FILE
Sbjct: 67  ----FWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILE 126

Query: 145 LTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEV-LTSIPRGSMTV 204
           LT+RSW H EENKRRTLQKNDIAAAITRTDIFDFLVDIVPRE++K+E    S   G   V
Sbjct: 127 LTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEEDAASALGGGGMV 186

Query: 205 GGPGDTLPYYMPSQHAPQVGAPGMIMGKPVMDPAMYAPQSHPYMAPQMWQHA 252
                 +PYY P    P V   GM++G+P MDP+    Q        +WQ++
Sbjct: 187 APAASGVPYYYPPMGQPAVPG-GMMIGRPAMDPSGVYAQPPSQAWQSVWQNS 226

[Close]

BLAST of Cucsa.182170 vs. TAIR10
Match: AT1G56170.1 (AT1G56170.1 nuclear factor Y, subunit C2)

HSP 1 Score: 213.8 bits (543), Expect = 1.3e-55
Identity = 116/177 (65.54%), Postives = 130/177 (73.45%), Query Frame = 1


Query: 54  QPGGAQLAQHQLAYQ--HIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKK 113
           Q G    A H    Q  H H   QQQ QQQLQ FW NQ QEIE  TDFKNH+LPLARIKK
Sbjct: 25  QSGPVNAASHMAFQQAHHFHHHHQQQQQQQLQMFWANQMQEIEHTTDFKNHTLPLARIKK 84

Query: 114 IMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDI 173
           IMKADEDVRMISAEAPV+FA+ACEMFILELTLR+W HTEENKRRTLQKNDIAAAI+RTD+
Sbjct: 85  IMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKNDIAAAISRTDV 144

Query: 174 FDFLVDIVPREDLKDEVLTSIPRGSM--TVGGPGDTLPYYM-----PSQHAPQVGAP 222
           FDFLVDI+PR++LK+E L  + +G++   VG P    PYY        QH PQ   P
Sbjct: 145 FDFLVDIIPRDELKEEGL-GVTKGTIPSVVGSP----PYYYLQQQGMMQHWPQEQHP 196

[Close]

BLAST of Cucsa.182170 vs. NCBI nr
Match: gi|778662518|ref|XP_011659897.1| (PREDICTED: nuclear transcription factor Y subunit C-9 [Cucumis sativus])

HSP 1 Score: 532.3 bits (1370), Expect = 4.6e-148
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 1


Query: 1   MDQQGHGQPPSMGAVGSGGQIAYGSNLYHPNQMSVGPTSGSVVTSVGGIQSTSQPGGAQL 60
           MDQQGHGQPPSMGAVGSGGQIAYGSNLYHPNQMSVGPTSGSVVTSVGGIQSTSQPGGAQL
Sbjct: 1   MDQQGHGQPPSMGAVGSGGQIAYGSNLYHPNQMSVGPTSGSVVTSVGGIQSTSQPGGAQL 60

Query: 61  AQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVR 120
           AQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVR
Sbjct: 61  AQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVR 120

Query: 121 MISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 180
           MISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP
Sbjct: 121 MISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 180

Query: 181 REDLKDEVLTSIPRGSMTVGGPGDTLPYYMPSQHAPQVGAPGMIMGKPVMDPAMYAPQSH 240
           REDLKDEVLTSIPRGSMTVGGPGDTLPYYMPSQHAPQVGAPGMIMGKPVMDPAMYAPQSH
Sbjct: 181 REDLKDEVLTSIPRGSMTVGGPGDTLPYYMPSQHAPQVGAPGMIMGKPVMDPAMYAPQSH 240

Query: 241 PYMAPQMWQHAQDQAPPDQ 260
           PYMAPQMWQHAQDQAPPDQ
Sbjct: 241 PYMAPQMWQHAQDQAPPDQ 259

[Close]

BLAST of Cucsa.182170 vs. NCBI nr
Match: gi|659099555|ref|XP_008450660.1| (PREDICTED: nuclear transcription factor Y subunit C-9 [Cucumis melo])

HSP 1 Score: 523.1 bits (1346), Expect = 2.8e-145
Identity = 257/259 (99.23%), Postives = 257/259 (99.23%), Query Frame = 1


Query: 1   MDQQGHGQPPSMGAVGSGGQIAYGSNLYHPNQMSVGPTSGSVVTSVGGIQSTSQPGGAQL 60
           MDQQGHGQP SMGAVGSGGQIAYGSNLYHPNQM VGPTSGSVVTSVGGIQSTSQPGGAQL
Sbjct: 1   MDQQGHGQP-SMGAVGSGGQIAYGSNLYHPNQMPVGPTSGSVVTSVGGIQSTSQPGGAQL 60

Query: 61  AQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVR 120
           AQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVR
Sbjct: 61  AQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVR 120

Query: 121 MISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 180
           MISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP
Sbjct: 121 MISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 180

Query: 181 REDLKDEVLTSIPRGSMTVGGPGDTLPYYMPSQHAPQVGAPGMIMGKPVMDPAMYAPQSH 240
           REDLKDEVLTSIPRGSMTVGGPGDTLPYYMPSQHAPQVGAPGMIMGKPVMDPAMYAPQSH
Sbjct: 181 REDLKDEVLTSIPRGSMTVGGPGDTLPYYMPSQHAPQVGAPGMIMGKPVMDPAMYAPQSH 240

Query: 241 PYMAPQMWQHAQDQAPPDQ 260
           PYMAPQMWQHAQDQAPPDQ
Sbjct: 241 PYMAPQMWQHAQDQAPPDQ 258

[Close]

BLAST of Cucsa.182170 vs. NCBI nr
Match: gi|502113373|ref|XP_004494629.1| (PREDICTED: nuclear transcription factor Y subunit C-3-like [Cicer arietinum])

HSP 1 Score: 442.2 bits (1136), Expect = 6.3e-121
Identity = 219/258 (84.88%), Postives = 226/258 (87.60%), Query Frame = 1


Query: 1   MDQQGHGQPPSMGAVGSGGQIAYGSNLYHPNQMSVGPTSGSVVTSVGGIQSTSQPGGAQL 60
           MD QGH Q P MG VGSGGQ+ YGSN Y PNQM+  P  GSVVTSVGG+QS  QP GAQL
Sbjct: 1   MDHQGHNQNPPMGVVGSGGQMTYGSNPYQPNQMTGAP--GSVVTSVGGMQSAGQPAGAQL 60

Query: 61  AQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVR 120
            QHQLAYQHIHQQQQQQLQQQLQ FW NQYQEIEKVTDFKNHSLPLARIKKIMKADEDVR
Sbjct: 61  GQHQLAYQHIHQQQQQQLQQQLQAFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVR 120

Query: 121 MISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 180
           MISAEAPV+FARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP
Sbjct: 121 MISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 180

Query: 181 REDLKDEVLTSIPRGSMTVGGPGDTLPY-YMPSQHAPQVGAPGMIMGKPVMDPAMYAPQS 240
           REDLKDEVLTSIPRG+M VGGP D+LPY YMP QHAPQVG  G+IMGKPVMDP MYA Q 
Sbjct: 181 REDLKDEVLTSIPRGTMPVGGPADSLPYCYMPPQHAPQVGTAGVIMGKPVMDPNMYAQQP 240

Query: 241 HPYMAPQMWQHAQDQAPP 258
           HPYMAPQMW    DQ PP
Sbjct: 241 HPYMAPQMWPQPPDQRPP 256

[Close]

BLAST of Cucsa.182170 vs. NCBI nr
Match: gi|1009117208|ref|XP_015875193.1| (PREDICTED: nuclear transcription factor Y subunit C-3-like [Ziziphus jujuba])

HSP 1 Score: 436.8 bits (1122), Expect = 2.6e-119
Identity = 218/255 (85.49%), Postives = 227/255 (89.02%), Query Frame = 1


Query: 1   MDQQGHGQPPSMGAVGSGGQIAYGSNLYHPNQMSVGPTSGSVVTSVGGIQSTSQPGGAQL 60
           MD QGH Q  SMG VG G Q+AYG+N Y  NQM+ GP   SV  S+G IQSTSQPGGAQL
Sbjct: 1   MDHQGHNQAQSMGMVGGGVQMAYGANPYQSNQMTGGPNPSSV-ASLGAIQSTSQPGGAQL 60

Query: 61  AQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVR 120
           AQHQLAYQHIHQQQQQQLQQQLQ+FW NQYQEIEKVTDFKNHSLPLARIKKIMKADEDVR
Sbjct: 61  AQHQLAYQHIHQQQQQQLQQQLQSFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVR 120

Query: 121 MISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 180
           MISAEAPV+FARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP
Sbjct: 121 MISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 180

Query: 181 REDLKDEVLTSIPRGSMTVGGPGDTLPY-YMPSQHAPQVGAPGMIMGKPVMDPAMYAPQS 240
           REDLKDEV+ SIPRG++ VGGP D LPY YMP QHAPQVGAPGMIMGKPVMDPAMYA QS
Sbjct: 181 REDLKDEVVASIPRGTVPVGGPADALPYCYMPPQHAPQVGAPGMIMGKPVMDPAMYAQQS 240

Query: 241 HPYMAPQMWQHAQDQ 255
           HPYMA QMWQ A DQ
Sbjct: 241 HPYMAQQMWQQAPDQ 254

[Close]

BLAST of Cucsa.182170 vs. NCBI nr
Match: gi|823153527|ref|XP_012476602.1| (PREDICTED: nuclear transcription factor Y subunit C-9-like [Gossypium raimondii])

HSP 1 Score: 436.4 bits (1121), Expect = 3.5e-119
Identity = 212/254 (83.46%), Postives = 223/254 (87.80%), Query Frame = 1


Query: 1   MDQQGHGQPPSMGAVGSGGQIAYGSNLYHPNQMSVGPTSGSVVTSVGGIQSTSQPGGAQL 60
           MDQQGHGQPP+MG +GSGGQ+ YG+N Y        P  GSVVTSVGGIQST QP GAQL
Sbjct: 1   MDQQGHGQPPAMGMMGSGGQVPYGTNPYQNQVTGTAPNPGSVVTSVGGIQSTGQPTGAQL 60

Query: 61  AQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVR 120
           AQHQLAYQ IH QQQQQLQQQLQ FW NQYQEIEKVTDFKNH+LPLARIKKIMKADEDVR
Sbjct: 61  AQHQLAYQQIHHQQQQQLQQQLQAFWANQYQEIEKVTDFKNHNLPLARIKKIMKADEDVR 120

Query: 121 MISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 180
           MISAEAPV+FARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP
Sbjct: 121 MISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 180

Query: 181 REDLKDEVLTSIPRGSMTVGGPGDTLPYYMPSQHAPQVGAPGMIMGKPVMDPAMYAPQSH 240
           REDLKDEVL SIPRG+M VGGP D L YYMP+QHAPQVG PGMIMGKPV+DPA+YA QSH
Sbjct: 181 REDLKDEVLASIPRGTMPVGGPADALSYYMPAQHAPQVGTPGMIMGKPVVDPAIYAQQSH 240

Query: 241 PYMAPQMWQHAQDQ 255
           PYMA QMW    +Q
Sbjct: 241 PYMAQQMWPPGPEQ 254

The following BLAST results are available for this feature:

BLAST of Cucsa.182170 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NFYC9_ARATH	2.3e-75	62.98	Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2...	[more]
NFYC3_ARATH	8.6e-70	59.84	Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana GN=NFYC3 PE=2...	[more]
NFYC1_ARATH	9.9e-58	56.16	Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1...	[more]
NFYC4_ARATH	1.7e-57	55.60	Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2...	[more]
NFYC2_ARATH	2.3e-54	65.54	Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana GN=NFYC2 PE=2...	[more]

BLAST of Cucsa.182170 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW22_CUCSA	3.2e-148	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G570150 PE=4 SV=1	[more]
A0A0B0N3J4_GOSAR	2.4e-119	83.46	Nuclear transcription factor Y subunit C-9-like protein OS=Gossypium arboreum GN...	[more]
A0A0D2N311_GOSRA	2.4e-119	83.46	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G242200 PE=4 SV=1	[more]
M5W0Q0_PRUPE	2.7e-118	82.38	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010147mg PE=4 SV=1	[more]
G7KYQ4_MEDTR	3.8e-117	82.95	Nuclear transcription factor Y protein OS=Medicago truncatula GN=MTR_7g113680 PE...	[more]

BLAST of Cucsa.182170 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08970.4	1.3e-76	62.98	nuclear factor Y, subunit C9	[more]
AT1G54830.2	4.9e-71	59.84	nuclear factor Y, subunit C3	[more]
AT3G48590.1	5.6e-59	56.16	nuclear factor Y, subunit C1	[more]
AT5G63470.1	9.5e-59	55.60	nuclear factor Y, subunit C4	[more]
AT1G56170.1	1.3e-55	65.54	nuclear factor Y, subunit C2	[more]

BLAST of Cucsa.182170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778662518\|ref\|XP_011659897.1\|	4.6e-148	100.00	PREDICTED: nuclear transcription factor Y subunit C-9 [Cucumis sativus]	[more]
gi\|659099555\|ref\|XP_008450660.1\|	2.8e-145	99.23	PREDICTED: nuclear transcription factor Y subunit C-9 [Cucumis melo]	[more]
gi\|502113373\|ref\|XP_004494629.1\|	6.3e-121	84.88	PREDICTED: nuclear transcription factor Y subunit C-3-like [Cicer arietinum]	[more]
gi\|1009117208\|ref\|XP_015875193.1\|	2.6e-119	85.49	PREDICTED: nuclear transcription factor Y subunit C-3-like [Ziziphus jujuba]	[more]
gi\|823153527\|ref\|XP_012476602.1\|	3.5e-119	83.46	PREDICTED: nuclear transcription factor Y subunit C-9-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003958	CBFA_NFYB_domain
IPR009072	Histone-fold
IPR003958	CBFA_NFYB_domain
IPR009072	Histone-fold
IPR003958	CBFA_NFYB_domain
IPR009072	Histone-fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity
GO:0046982	protein heterodimerization activity
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.182170.3	Cucsa.182170.3	mRNA
Cucsa.182170.2	Cucsa.182170.2	mRNA
Cucsa.182170.1	Cucsa.182170.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 103..166 score: 7.1
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 104..181 score: 8.2
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 69..175 score: 6.2
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 30..259 score: 8.7E
None	No IPR available	PANTHER	PTHR10252:SF49	SUBFAMILY NOT NAMED	coord: 30..259 score: 8.7E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.182170	Cla005244	Watermelon (97103) v1	cgywmB348
Cucsa.182170	Csa1G570150	Cucumber (Chinese Long) v2	cgycuB278
Cucsa.182170	MELO3C015332	Melon (DHL92) v3.5.1	cgymeB328
Cucsa.182170	ClCG03G016880	Watermelon (Charleston Gray)	cgywcgB324
Cucsa.182170	CSPI01G26720	Wild cucumber (PI 183967)	cgycpiB288
Cucsa.182170	CmaCh10G010760	Cucurbita maxima (Rimu)	cgycmaB0517
Cucsa.182170	CmaCh11G011240	Cucurbita maxima (Rimu)	cgycmaB0519
Cucsa.182170	CmoCh11G011600	Cucurbita moschata (Rifu)	cgycmoB0519
Cucsa.182170	CmoCh10G011560	Cucurbita moschata (Rifu)	cgycmoB0518
Cucsa.182170	Lsi06G001370	Bottle gourd (USVL1VR-Ls)	cgylsiB304
Cucsa.182170	Cp4.1LG18g00690	Cucurbita pepo (Zucchini)	cgycpeB0499
Cucsa.182170	MELO3C015332.2	Melon (DHL92) v3.6.1	cgymedB323
Cucsa.182170	CsaV3_1G039060	Cucumber (Chinese Long) v3	cgycucB293
Cucsa.182170	Cla97C03G067230	Watermelon (97103) v2	cgywmbB328
Cucsa.182170	Bhi02G001684	Wax gourd	cgywgoB374
Cucsa.182170	Carg27604	Silver-seed gourd	carcgyB0909

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.182170	Wax gourd	cgywgoB372
Cucsa.182170	Cucurbita maxima (Rimu)	cgycmaB0520
Cucsa.182170	Cucurbita moschata (Rifu)	cgycmoB0521
Cucsa.182170	Cucurbita pepo (Zucchini)	cgycpeB0500