Cucsa.178800 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.178800
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Succinate dehydrogenase assembly factor 2, mitochondrial
Location	scaffold01227 : 1158826 .. 1163370 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCCTTCTCTCGAAATCAAACCCTGAGCACTCTTCACTCTCCTCTAGTTCTCTCCAATTTTCAGTTCGGTTCCTCCCCTCCGATCAGAAGACGCCGGCGACCACCGCTTACCCTCTCCGATCAGACGACGACGGCGACTGAAACTCCGATCAGACCAGCCACGCTCTATCTCCGTTTTGGTTACTTGCTGTATCGGTCTAGAGGTTTTTATCTTTTCTTTTCTTTTCTTTAATGTGTATCAATGTTTGAGGAATGTTTCAACTGCTTTGACCGAACATATATATATATATATATATATATATATATATATgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtACcGAACATATATATATATATATATATATATATATATATATGCTTTTTTATtCCTTAcTTCGTATTAATATATAGTCCCAACGGAGATGTTGAAATTTATAAGAAACATTGCTTTTCGGGTGCGTTTAGAAAAAAaTATGTATTTTTGTATTTATTTAATGTGGAGTTTGTTCTTATATGGTTTGAGTTTTTGGAATATTATCTGAATTTTTGGTATGGTTTTATCAGATTTGAGAGACATGATGCGTTCTTTGGAATGTTTTTGTTTTGAGAACATTTTCTTAATGAATTCATTCTATTCTTTATACTAGATGGCATCTTCCTCCTCGTCTACATCTACCAATAGTAGTCAATCATCCTCGTTTTTACATTTTGTTTTGGATGAAAGTGTGGTCTCTATTTAGGATTTTGTATTTGTATTGTAGTTTGGAACTAGTTTGATGGATTCAGACAGCTAATGCACTCTTTATTTATGTTTTAAAGAAATATTGCTGTGCTCTACCATATATGAGTTTATCTACAAATATTATCACAAAAGTTATTTTTTtAAAAAATTATGATGTGTCGTGTCCTAGTTTCTAGAAATTGGGCATGTCGTGCTGTGTTGTGTCGCGTGCTTCGTAGATCTAGATTAGTGGGAAAATCTAAAATGAGGTGCCACACATTGGGATATCTCTTTGGCAAGACCAATGGTTGGATAGTTCTAATTTGGGTTCTGTTCTCTACTCCCAAGTCTCCTTGGAATTGTAACTAATCCTAATGGTTCAGTACTGGAGCAATGAGGTGCAACTACTCTATCTTGGTTTGTCTCTTTTAGACAGTTTTTAAGGATGAAGAAGCTTTGGATTTTCATATTTTATTGGGTTCTTTAGAAGGCTGAAGAGTTCTTCACTCGGATTCAAGAAGTTGAAAGTTGTAGTATTTAGGCTTGTTTTTCAGTTAAATCTCTTACAAGCATTTGTTGGCATCTACTCCAATTGATAAATTTCTTTACATGGAAATTAAAATGGCCTCGTCAAGTAAACATCATTATTTGGGTTATGATTTTTGGAGCTCTCAACCACTCTCTTACAATCCAAAGAAAACTTCCTGCTCACTATTTGTTACCTTCAATTTGCCCTCTATGCTTGGCAGATGATGAGAGGTCTCAACATCTCTTCTTTTGATTGTCGCTATTCAAAGACATGTTGGTGGAAGTTGTTTTCAACGTTCAATCTTCCATGGGTTTTtATTGATTGGTCCAAGGACAGTGTGTTTTTGGCTTTGAGTGAGTCCTCCCTTGAAGTTGAAGCCTCTCTCTCAAATTTTATGGTCTAAAGTCCAGTTATAGCTTTTCTCTCCAAAATTTGATTTGAAATAAAGCAATGCATTTTTCAAGACAAGTCTCTAGCATGGTCCGATCATTTTGAGTTGCTCAAGTTAAGGCTTCATCTTGGTGTTCTCTCTCCCTGCCTTATGCAGATTATTCCATTTAAGTATATGGTTAAATTGGAATGCATTTATTTTACCAACATAATTTTCTAATATTGTTTGCATCTTCGCTCTAATCCAGATCACATGCTATGAAGCTGTGCGTTTGCAAGTTGTATGTGGAATTGCTTCTTTCTGGAGTTTGGTTTTGTGCAGCTCATTTGAAAGTTATTGGGGACCTGATCGGGAAGTTCCTCCTCCATCAGTCTTTTGGTGGGAAATGTCGCTTTTTGGGGTTTGTGGGGGTGTGGGTTAGGATACCATCTAATAAGAATACTTGATAAACACAAACAACATCAAGAGGGTTCTCTCTCCCAAAGCTCCATGATAGAAACCCTCACCCCCTCCCTCTGGTGTTCAACTTGTCTTATTTATAGCCAAGATGCCACTAGTTAATGACCCATGATACCCCTTGCTAATAAGTAATACCCTACAAATCTTACCCCTATACCCCTTTAACTAGTACTCTCACAGCTTGCTCTGTTATGGGATCGTTGGGGGAGAAATAACTGAGTTTTTAAAGGTGTGGAGATAGGTCCTAATGATGTGTGTCCTTTGGTGAGGTTTCATGTTTCTTTTTCTGCTCCAATTTCTCTGTAGTTGCTTTATAGACAATATTTCTTATTTGCAACCCCATTCTGTAGCGTGTGTATGCTTTTGTATACCTTCGTTTTGTTTTTTTTtAGTAAAAACAGTTGTTTCTATTAGAAAAAATCATTGTGGAAGTGACTTTAATCATAGGCTATCAAATTATGGAAGTGTTGTATTCTTTCATTTTTTTtCTGAATGAAATTtGTTTTTTTtATCCCAAAAAGGGCTATCGAATTGTTTGAGTTGTGTTTTTCTATGTTGTTTATCAATATATTGTTGTTTAAATTGTTTCTTGTGATATTTGATGCTTTGCAAACTATGTTGTTTTTCTATGGTTCTATGTTTCTCATGTAAACTAATTACTGATACATGCCTATGTTAAACAGAACATTGTTGCGTATAAACACGAGTCAAGTGGTCTTAGGCATTAGTTTATTTTAGTGGTATTTATAGAGAGCAATTTCCCTTTAAATATTATTCTTTTTTGATCAACTTGTTTCAATCCAGTATTATCATTTTGAAAGGCAAATGGCGACTTTTATAAGGGCTCTTAACAAAGCTCATCAAGTTCTATACTTGAAAGCTTCCCCCACCATTTTGAGAAGCAAATCGATGCCCCTTTTGCCTACTGCTTTCATTGGGTTGAAGAATCTCCAAAGAGAACTAACAAATCGCAATCAGAATCACCATGGTTGTTTCTCTAGTGTCCATTTCTCTTCGACAAGTACAAATCCTGACATCGATCTCTCAAATGAAGATAGCAAGAGGCAATTATTCAATAGGTTCGTTCTTCCTTCATTTTGTTAATTAATTTTCGCATCCCTCTCGCTCTGTGTTTCTCTCAATTATTGACTCATTTGTTTTGATTGACAAGTCGTTTTGTTTGGTTGTTGGACTTAACAGGTTGCTGTACCGGAGCAAACAACGAGGGTTTTtGGAATTGGATTTGATACTTGGGAAATGGGTAGAGGATCACATCCATTCCTTAGATGCAGATGGTATTCGAGCTCTAATTAATGTTCTTGACCTGGTAATTTAGTCTTGTACTGCTGACAGACTGCGACTCACTATTTTTtCCCCCCcTTTTCTATCTTTtCTTCCTTTTTtATCTTTGCTTTTTtCTATTTTTTtCCCATTATTGTTATATATATACGGGTGAATATTTCACAATGTGTCCAAATATGCACAAATATATATATATATATATTTATATGTATATATTAGAAAAATGTATCTCCAACATGTCATGTCGTTTTGAAAATTGACATGTTGTCGTTGTGCTGTATTCAATGTCTGTTTCTTAGCTCGCAACTATCCCATAAAAATGAAAAATAGTAGAGATGCAACAAAGACTCAATAATTCTTCTACTCTTGCAGGAAAATCCAGATTTATGGAAGTGGTTAACAGGCCAAGAGCAACCCCCTGAAGCTTTGAAAACAAATCCTGTGAGCATCCAAGCATGGCATTAATTACCGAACCTTTTATCTTGATTAAATATGTGGTTTACAATTAAAGTATTGTATCATTGTAGGTATTTACTGGAGTGAAAGAGAAGGTGATAGACAATCTCAACAAACATGCCTCACCTGAGACAAGAACACCACCTGGCCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAAAGGTCGAGATGGCCCCATAACAGGAAATCAGTAGCTCTTCCCTTTAACTTTATGCCTAATCTCTCTTTTAAGTATATAAGAACAGAAAAGCCCTGCTAAGGTTTCTATATAAATGGTAGATTGGGAATAAGTTAAACCAACAAAGACTTTGAAGGGAACATTGTTTAGTATGTCTCTCCCTTTAAACCCTTGATCTATTGTATATTAATAATTTTTTtCCTTGTATGCATTTAACGGTAACTACATTGTACCGATCTTGAACACTTTGTTGTTTTGATGTGCTTACCAATATAGATTGTATTTCTTTACAA

mRNA sequence

GTCCCTTCTCTCGAAATCAAACCCTGAGCACTCTTCACTCTCCTCTAGTTCTCTCCAATTTTCAGTTCGGTTCCTCCCCTCCGATCAGAAGACGCCGGCGACCACCGCTTACCCTCTCCGATCAGACGACGACGGCGACTGAAACTCCGATCAGACCAGCCACGCTCTATCTCCGTTTTGGTTACTTGCTGTATCGGTCTAGAGTATTATCATTTTGAAAGGCAAATGGCGACTTTTATAAGGGCTCTTAACAAAGCTCATCAAGTTCTATACTTGAAAGCTTCCCCCACCATTTTGAGAAGCAAATCGATGCCCCTTTTGCCTACTGCTTTCATTGGGTTGAAGAATCTCCAAAGAGAACTAACAAATCGCAATCAGAATCACCATGGTTGTTTCTCTAGTGTCCATTTCTCTTCGACAAGTACAAATCCTGACATCGATCTCTCAAATGAAGATAGCAAGAGGCAATTATTCAATAGGTTGCTGTACCGGAGCAAACAACGAGGGTTTTTGGAATTGGATTTGATACTTGGGAAATGGGTAGAGGATCACATCCATTCCTTAGATGCAGATGGTATTCGAGCTCTAATTAATGTTCTTGACCTGGAAAATCCAGATTTATGGAAGTGGTTAACAGGCCAAGAGCAACCCCCTGAAGCTTTGAAAACAAATCCTGTATTTACTGGAGTGAAAGAGAAGGTGATAGACAATCTCAACAAACATGCCTCACCTGAGACAAGAACACCACCTGGCCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAAAGGTCGAGATGGCCCCATAACAGGAAATCAGTAGCTCTTCCCTTTAACTTTATGCCTAATCTCTCTTTTAAGTATATAAGAACAGAAAAGCCCTGCTAAGGTTTCTATATAAATGGTAGATTGGGAATAAGTTAAACCAACAAAGACTTTGAAGGGAACATTGTTTAGTATGTCTCTCCCTTTAAACCCTTGATCTATTGTATATTAATAATTTTTTTCCTTGTATGCATTTAACGGTAACTACATTGTACCGATCTTGAACACTTTGTTGTTTTGATGTGCTTACCAATATAGATTGTATTTCTTTACAA

Coding sequence (CDS)

ATGGCGACTTTTATAAGGGCTCTTAACAAAGCTCATCAAGTTCTATACTTGAAAGCTTCCCCCACCATTTTGAGAAGCAAATCGATGCCCCTTTTGCCTACTGCTTTCATTGGGTTGAAGAATCTCCAAAGAGAACTAACAAATCGCAATCAGAATCACCATGGTTGTTTCTCTAGTGTCCATTTCTCTTCGACAAGTACAAATCCTGACATCGATCTCTCAAATGAAGATAGCAAGAGGCAATTATTCAATAGGTTGCTGTACCGGAGCAAACAACGAGGGTTTTtGGAATTGGATTTGATACTTGGGAAATGGGTAGAGGATCACATCCATTCCTTAGATGCAGATGGTATTCGAGCTCTAATTAATGTTCTTGACCTGGAAAATCCAGATTTATGGAAGTGGTTAACAGGCCAAGAGCAACCCCCTGAAGCTTTGAAAACAAATCCTGTATTTACTGGAGTGAAAGAGAAGGTGATAGACAATCTCAACAAACATGCCTCACCTGAGACAAGAACACCACCTGGCCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAAAGGTCGAGATGGCCCCATAACAGGAAATCAGTAG

Protein sequence

MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSVHFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ*

Homology

[Close]

BLAST of Cucsa.178800 vs. Swiss-Prot
Match: SDAF2_ARATH (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Arabidopsis thaliana GN=SDHAF2 PE=1 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 8.7e-54
Identity = 103/193 (53.37%), Postives = 140/193 (72.54%), Query Frame = 1


Query: 6   RALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSVHFSST 65
           +AL   H+++  +++  + RS  +P          N    +  RN    G       +++
Sbjct: 5   KALINVHRII--RSTAVVGRSSIIP-------AAANRSYPIIFRNGVDLGARFFCENTAS 64

Query: 66  STNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVL 125
           + N DIDLSNE++KR+  NRLLYRSKQRGFLELDL+LG WVE++++S+D +G+++LI+VL
Sbjct: 65  AQNFDIDLSNEENKRRTINRLLYRSKQRGFLELDLVLGNWVEENVNSMDENGVKSLIHVL 124

Query: 126 DLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWVRGWDD 185
           +LENPDLWKWLT QEQPPEA+ +NPVF+ + EKV+ NLNKHA+PETR   GQ WVRGWDD
Sbjct: 125 NLENPDLWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAGQPWVRGWDD 184

Query: 186 FKKGRDGPITGNQ 199
           FK+GRD PI+GNQ
Sbjct: 185 FKRGRDAPISGNQ 188

[Close]

BLAST of Cucsa.178800 vs. Swiss-Prot
Match: SDHF2_DICDI (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Dictyostelium discoideum GN=DDB_G0293946 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-06
Identity = 29/79 (36.71%), Postives = 48/79 (60.76%), Query Frame = 1


Query: 71  IDLSNEDSK-RQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVLDLEN 130
           I ++NE S+  +L  +LLY+SK+RG LE DL+LG +   +IH L    +R    +L   +
Sbjct: 43  IKINNEISEIEKLRKKLLYQSKERGMLENDLLLGSFATLNIHKLTESQLRDYNLLLQQPD 102

Query: 131 PDLWKWLTGQEQPPEALKT 149
           PD++ W+  + + PE  +T
Sbjct: 103 PDIFNWILKKAEVPEEFET 121

[Close]

BLAST of Cucsa.178800 vs. Swiss-Prot
Match: SDHF2_CRYNB (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CNBA4490 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.3e-06
Identity = 31/100 (31.00%), Postives = 53/100 (53.00%), Query Frame = 1


Query: 71  IDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVLDLENP 130
           +D + ED K  L  RL+Y++++RG LE DLIL  +  D + ++D + ++    +LD  + 
Sbjct: 68  LDRTGEDEKT-LRARLIYQTRKRGTLETDLILSTFARDELPNMDFEEMKQFDKLLDEPDW 127

Query: 131 DLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPE 171
           D++ W   +  PP   K  P        +++ L KHA  E
Sbjct: 128 DIFYWSVKKRDPPARWKGTP--------LLEKLQKHAKNE 158

[Close]

BLAST of Cucsa.178800 vs. Swiss-Prot
Match: SDHF2_CRYNJ (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CNA04680 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.3e-06
Identity = 31/100 (31.00%), Postives = 53/100 (53.00%), Query Frame = 1


Query: 71  IDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVLDLENP 130
           +D + ED K  L  RL+Y++++RG LE DLIL  +  D + ++D + ++    +LD  + 
Sbjct: 68  LDRTGEDEKT-LRARLIYQTRKRGTLETDLILSTFARDELPNMDFEEMKQFDKLLDEPDW 127

Query: 131 DLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPE 171
           D++ W   +  PP   K  P        +++ L KHA  E
Sbjct: 128 DIFYWSVKKRDPPARWKGTP--------LLEKLQKHAKNE 158

[Close]

BLAST of Cucsa.178800 vs. Swiss-Prot
Match: SDHF2_SCHJY (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=SJAG_01895 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.9e-06
Identity = 25/83 (30.12%), Postives = 52/83 (62.65%), Query Frame = 1


Query: 75  NEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVLDLENPDLWK 134
           ++++++ L +RL+Y+S++RG LE DLIL  + ++++   + + ++   N+L+  + D+  
Sbjct: 46  SKETEKLLRSRLVYQSRKRGILETDLILSGFAKEYLSKYNVELLKEYDNLLNEADWDILY 105

Query: 135 WLTGQEQPPEALKTNPVFTGVKE 158
           W TG+ Q PE    + V   +KE
Sbjct: 106 WCTGERQAPEHWLNSRVLRDLKE 128

[Close]

BLAST of Cucsa.178800 vs. TrEMBL
Match: A0A0A0LKF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072460 PE=4 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 8.3e-112
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1


Query: 1   MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV 60
           MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV
Sbjct: 68  MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV 127

Query: 61  HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 120
           HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA
Sbjct: 128 HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 187

Query: 121 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 180
           LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV
Sbjct: 188 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 247

Query: 181 RGWDDFKKGRDGPITGNQ 199
           RGWDDFKKGRDGPITGNQ
Sbjct: 248 RGWDDFKKGRDGPITGNQ 265

[Close]

BLAST of Cucsa.178800 vs. TrEMBL
Match: A0A068TQT2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022341001 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 9.0e-58
Identity = 111/178 (62.36%), Postives = 136/178 (76.40%), Query Frame = 1


Query: 21  PTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSVHFSSTSTNPDIDLSNEDSKR 80
           P IL S +   + T+ +   N+ R +           S   F S++   +IDLSNE+SKR
Sbjct: 13  PRILNSSNQTSIATSTMSSHNIYRPILG---------SLPCFYSSNQALNIDLSNEESKR 72

Query: 81  QLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVLDLENPDLWKWLTGQE 140
           +LFNRLLYRS+QRGFLELDLILG+WVEDHIHS+D +GI+AL++VLDLENPDLWKWLTGQ 
Sbjct: 73  RLFNRLLYRSRQRGFLELDLILGRWVEDHIHSMDENGIKALVHVLDLENPDLWKWLTGQG 132

Query: 141 QPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ 199
           QPPEA++ NPVF  V+++V++NLN HASPETR  PGQ WVRGWDDFKKGRDGP  GNQ
Sbjct: 133 QPPEAVRMNPVFADVQKRVVNNLNSHASPETRATPGQPWVRGWDDFKKGRDGPAVGNQ 181

[Close]

BLAST of Cucsa.178800 vs. TrEMBL
Match: M5WAU4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012247mg PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.0e-57
Identity = 105/150 (70.00%), Postives = 127/150 (84.67%), Query Frame = 1


Query: 49  RNQNHHGCFSSVHFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVED 108
           R Q  +G     +   T++N DIDLSN++SKR+LFNRL+YRSKQRGFLELDL+LGKWVE+
Sbjct: 29  RPQYGYGLVQRSYSIGTTSNLDIDLSNQESKRRLFNRLIYRSKQRGFLELDLVLGKWVEE 88

Query: 109 HIHSLDADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHAS 168
           HIHS+D +GI++L++VLDLENP LWKWL GQEQPPEALKTNPVFT V+ KV++NLN +A+
Sbjct: 89  HIHSMDENGIKSLVDVLDLENPYLWKWLIGQEQPPEALKTNPVFTAVRNKVLNNLNSYAA 148

Query: 169 PETRTPPGQQWVRGWDDFKKGRDGPITGNQ 199
           PETR  PGQ WVRGWDD KKG+ GPITGNQ
Sbjct: 149 PETRATPGQPWVRGWDDIKKGQGGPITGNQ 178

[Close]

BLAST of Cucsa.178800 vs. TrEMBL
Match: V4TAF7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032866mg PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.6e-57
Identity = 102/136 (75.00%), Postives = 125/136 (91.91%), Query Frame = 1


Query: 63  SSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALI 122
           S+T+ + DIDLSNE+ K++LFNRLLYRSKQRGFLELDL+LGKWVE+HIHS+D +GI+AL+
Sbjct: 47  SNTTQSLDIDLSNEEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDKNGIKALV 106

Query: 123 NVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWVRG 182
           +VL+LENPDLWKWLTGQEQPPEA+KTNPVF+ +  KV++NLN +ASPETR+ PGQ WVRG
Sbjct: 107 DVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLNSYASPETRSEPGQPWVRG 166

Query: 183 WDDFKKGRDGPITGNQ 199
           WDDFKKGRD P++GNQ
Sbjct: 167 WDDFKKGRDSPLSGNQ 182

[Close]

BLAST of Cucsa.178800 vs. TrEMBL
Match: A0A061G020_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_014776 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.6e-57
Identity = 121/198 (61.11%), Postives = 144/198 (72.73%), Query Frame = 1


Query: 1   MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV 60
           MAT  RAL  AH+         IL S ++P   T  I     Q    +R       FSS 
Sbjct: 1   MATLRRALLNAHR---------ILNSSTVPSRTTIVI---RPQYGWVSR-------FSST 60

Query: 61  HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 120
           + S+T    DIDLS+E+SKR+LFNRLLYRSKQRGFLELDL+LGKWVE+HI+S+D +GI+A
Sbjct: 61  NISNTQPL-DIDLSSEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEEHIYSMDENGIKA 120

Query: 121 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 180
           L++VLDLENPDLWKWLTGQEQPPE +  NPVF+ V+EKV+ NLN H++PETR  PGQ WV
Sbjct: 121 LVHVLDLENPDLWKWLTGQEQPPETVSINPVFSTVQEKVLKNLNSHSAPETRATPGQPWV 178

Query: 181 RGWDDFKKGRDGPITGNQ 199
           RGWDD KKGRD PITGNQ
Sbjct: 181 RGWDDIKKGRDSPITGNQ 178

[Close]

BLAST of Cucsa.178800 vs. TAIR10
Match: AT5G51040.3 (AT5G51040.3 unknown protein)

HSP 1 Score: 203.8 bits (517), Expect = 1.0e-52
Identity = 103/202 (50.99%), Postives = 140/202 (69.31%), Query Frame = 1


Query: 6   RALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSVHFSST 65
           +AL   H+++  +++  + RS  +P          N    +  RN    G       +++
Sbjct: 5   KALINVHRII--RSTAVVGRSSIIP-------AAANRSYPIIFRNGVDLGARFFCENTAS 64

Query: 66  STNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVL 125
           + N DIDLSNE++KR+  NRLLYRSKQRGFLELDL+LG WVE++++S+D +G+++LI+VL
Sbjct: 65  AQNFDIDLSNEENKRRTINRLLYRSKQRGFLELDLVLGNWVEENVNSMDENGVKSLIHVL 124

Query: 126 DL---------ENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPG 185
           +L         ENPDLWKWLT QEQPPEA+ +NPVF+ + EKV+ NLNKHA+PETR   G
Sbjct: 125 NLVESEATKLLENPDLWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAG 184

Query: 186 QQWVRGWDDFKKGRDGPITGNQ 199
           Q WVRGWDDFK+GRD PI+GNQ
Sbjct: 185 QPWVRGWDDFKRGRDAPISGNQ 197

[Close]

BLAST of Cucsa.178800 vs. NCBI nr
Match: gi|449470271|ref|XP_004152841.1| (PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Cucumis sativus])

HSP 1 Score: 411.0 bits (1055), Expect = 1.2e-111
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1


Query: 1   MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV 60
           MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV
Sbjct: 1   MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV 60

Query: 61  HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 120
           HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA
Sbjct: 61  HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 120

Query: 121 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 180
           LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV
Sbjct: 121 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 180

Query: 181 RGWDDFKKGRDGPITGNQ 199
           RGWDDFKKGRDGPITGNQ
Sbjct: 181 RGWDDFKKGRDGPITGNQ 198

[Close]

BLAST of Cucsa.178800 vs. NCBI nr
Match: gi|700206113|gb|KGN61232.1| (hypothetical protein Csa_2G072460 [Cucumis sativus])

HSP 1 Score: 411.0 bits (1055), Expect = 1.2e-111
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1


Query: 1   MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV 60
           MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV
Sbjct: 68  MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV 127

Query: 61  HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 120
           HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA
Sbjct: 128 HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 187

Query: 121 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 180
           LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV
Sbjct: 188 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 247

Query: 181 RGWDDFKKGRDGPITGNQ 199
           RGWDDFKKGRDGPITGNQ
Sbjct: 248 RGWDDFKKGRDGPITGNQ 265

[Close]

BLAST of Cucsa.178800 vs. NCBI nr
Match: gi|659082578|ref|XP_008441916.1| (PREDICTED: uncharacterized protein LOC103485912 [Cucumis melo])

HSP 1 Score: 385.2 bits (988), Expect = 7.0e-104
Identity = 184/198 (92.93%), Postives = 191/198 (96.46%), Query Frame = 1


Query: 1   MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV 60
           MATFIRAL+KAHQVLYLKASPTILRSK MP LP+ FIGL+NLQ +LTNRNQNHHGC  S+
Sbjct: 3   MATFIRALSKAHQVLYLKASPTILRSKLMPFLPSVFIGLENLQSQLTNRNQNHHGCSFSL 62

Query: 61  HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 120
           HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIR 
Sbjct: 63  HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRD 122

Query: 121 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 180
           LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKV++NLNKHASPETRTPPGQQWV
Sbjct: 123 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVMNNLNKHASPETRTPPGQQWV 182

Query: 181 RGWDDFKKGRDGPITGNQ 199
           RGWDDFKKGRDGPITGNQ
Sbjct: 183 RGWDDFKKGRDGPITGNQ 200

[Close]

BLAST of Cucsa.178800 vs. NCBI nr
Match: gi|661898327|emb|CDO98294.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 231.5 bits (589), Expect = 1.3e-57
Identity = 111/178 (62.36%), Postives = 136/178 (76.40%), Query Frame = 1


Query: 21  PTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSVHFSSTSTNPDIDLSNEDSKR 80
           P IL S +   + T+ +   N+ R +           S   F S++   +IDLSNE+SKR
Sbjct: 13  PRILNSSNQTSIATSTMSSHNIYRPILG---------SLPCFYSSNQALNIDLSNEESKR 72

Query: 81  QLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVLDLENPDLWKWLTGQE 140
           +LFNRLLYRS+QRGFLELDLILG+WVEDHIHS+D +GI+AL++VLDLENPDLWKWLTGQ 
Sbjct: 73  RLFNRLLYRSRQRGFLELDLILGRWVEDHIHSMDENGIKALVHVLDLENPDLWKWLTGQG 132

Query: 141 QPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ 199
           QPPEA++ NPVF  V+++V++NLN HASPETR  PGQ WVRGWDDFKKGRDGP  GNQ
Sbjct: 133 QPPEAVRMNPVFADVQKRVVNNLNSHASPETRATPGQPWVRGWDDFKKGRDGPAVGNQ 181

[Close]

BLAST of Cucsa.178800 vs. NCBI nr
Match: gi|595849161|ref|XP_007209673.1| (hypothetical protein PRUPE_ppa012247mg [Prunus persica])

HSP 1 Score: 230.3 bits (586), Expect = 2.9e-57
Identity = 105/150 (70.00%), Postives = 127/150 (84.67%), Query Frame = 1


Query: 49  RNQNHHGCFSSVHFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVED 108
           R Q  +G     +   T++N DIDLSN++SKR+LFNRL+YRSKQRGFLELDL+LGKWVE+
Sbjct: 29  RPQYGYGLVQRSYSIGTTSNLDIDLSNQESKRRLFNRLIYRSKQRGFLELDLVLGKWVEE 88

Query: 109 HIHSLDADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHAS 168
           HIHS+D +GI++L++VLDLENP LWKWL GQEQPPEALKTNPVFT V+ KV++NLN +A+
Sbjct: 89  HIHSMDENGIKSLVDVLDLENPYLWKWLIGQEQPPEALKTNPVFTAVRNKVLNNLNSYAA 148

Query: 169 PETRTPPGQQWVRGWDDFKKGRDGPITGNQ 199
           PETR  PGQ WVRGWDD KKG+ GPITGNQ
Sbjct: 149 PETRATPGQPWVRGWDDIKKGQGGPITGNQ 178

The following BLAST results are available for this feature:

BLAST of Cucsa.178800 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SDAF2_ARATH	8.7e-54	53.37	Succinate dehydrogenase assembly factor 2, mitochondrial OS=Arabidopsis thaliana...	[more]
SDHF2_DICDI	1.4e-06	36.71	Succinate dehydrogenase assembly factor 2, mitochondrial OS=Dictyostelium discoi...	[more]
SDHF2_CRYNB	2.3e-06	31.00	Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoform...	[more]
SDHF2_CRYNJ	2.3e-06	31.00	Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoform...	[more]
SDHF2_SCHJY	3.9e-06	30.12	Succinate dehydrogenase assembly factor 2, mitochondrial OS=Schizosaccharomyces ...	[more]

BLAST of Cucsa.178800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKF9_CUCSA	8.3e-112	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072460 PE=4 SV=1	[more]
A0A068TQT2_COFCA	9.0e-58	62.36	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022341001 PE=4 SV=1	[more]
M5WAU4_PRUPE	2.0e-57	70.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012247mg PE=4 SV=1	[more]
V4TAF7_9ROSI	2.6e-57	75.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032866mg PE=4 SV=1	[more]
A0A061G020_THECC	2.6e-57	61.11	Uncharacterized protein OS=Theobroma cacao GN=TCM_014776 PE=4 SV=1	[more]

BLAST of Cucsa.178800 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G51040.3	1.0e-52	50.99	unknown protein	[more]

BLAST of Cucsa.178800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449470271\|ref\|XP_004152841.1\|	1.2e-111	100.00	PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Cucumis sat...	[more]
gi\|700206113\|gb\|KGN61232.1\|	1.2e-111	100.00	hypothetical protein Csa_2G072460 [Cucumis sativus]	[more]
gi\|659082578\|ref\|XP_008441916.1\|	7.0e-104	92.93	PREDICTED: uncharacterized protein LOC103485912 [Cucumis melo]	[more]
gi\|661898327\|emb\|CDO98294.1\|	1.3e-57	62.36	unnamed protein product [Coffea canephora]	[more]
gi\|595849161\|ref\|XP_007209673.1\|	2.9e-57	70.00	hypothetical protein PRUPE_ppa012247mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005631	SDH
IPR005631	SDH
IPR005631	SDH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.178800.2	Cucsa.178800.2	mRNA
Cucsa.178800.3	Cucsa.178800.3	mRNA
Cucsa.178800.1	Cucsa.178800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005631	Flavinator of succinate dehydrogenase	GENE3D	G3DSA:1.10.150.250		coord: 78..163 score: 2.4
IPR005631	Flavinator of succinate dehydrogenase	PFAM	PF03937	Sdh5	coord: 84..152 score: 4.5
IPR005631	Flavinator of succinate dehydrogenase	unknown	SSF109910	YgfY-like	coord: 84..149 score: 2.09
None	No IPR available	PANTHER	PTHR12469	PROTEIN EMI5 HOMOLOG, MITOCHONDRIAL	coord: 69..179 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.178800	Csa2G072460	Cucumber (Chinese Long) v2	cgycuB274
Cucsa.178800	MELO3C008773	Melon (DHL92) v3.5.1	cgymeB320
Cucsa.178800	CSPI02G06930	Wild cucumber (PI 183967)	cgycpiB284
Cucsa.178800	MELO3C008773.2	Melon (DHL92) v3.6.1	cgymedB315
Cucsa.178800	CsaV3_2G009360	Cucumber (Chinese Long) v3	cgycucB287

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.178800	Silver-seed gourd	carcgyB0005
Cucsa.178800	Silver-seed gourd	carcgyB0204
Cucsa.178800	Watermelon (97103) v2	cgywmbB323
Cucsa.178800	Wax gourd	cgywgoB366
Cucsa.178800	Cucurbita maxima (Rimu)	cgycmaB0509
Cucsa.178800	Cucurbita maxima (Rimu)	cgycmaB0510
Cucsa.178800	Cucurbita moschata (Rifu)	cgycmoB0509
Cucsa.178800	Cucurbita moschata (Rifu)	cgycmoB0510
Cucsa.178800	Watermelon (Charleston Gray)	cgywcgB319
Cucsa.178800	Watermelon (97103) v1	cgywmB341
Cucsa.178800	Cucurbita pepo (Zucchini)	cgycpeB0491
Cucsa.178800	Cucurbita pepo (Zucchini)	cgycpeB0492
Cucsa.178800	Bottle gourd (USVL1VR-Ls)	cgylsiB300