Cucsa.178800.3 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.178800.3
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Succinate dehydrogenase assembly factor 2, mitochondrial
Location	scaffold01227 : 1158826 .. 1163370 (+)
Sequence length	1082

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCCTTCTCTCGAAATCAAACCCTGAGCACTCTTCACTCTCCTCTAGTTCTCTCCAATTTTCAGTTCGGTTCCTCCCCTCCGATCAGAAGACGCCGGCGACCACCGCTTACCCTCTCCGATCAGACGACGACGGCGACTGAAACTCCGATCAGACCAGCCACGCTCTATCTCCGTTTTGGTTACTTGCTGTATCGGTCTAGAGGTTTTTATCTTTTCTTTTCTTTTCTTTAATGTGTATCAATGTTTGAGGAATGTTTCAACTGCTTTGACCGAACATATATATATATATATATATATATATATATATATgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtACcGAACATATATATATATATATATATATATATATATATATGCTTTTTTATtCCTTAcTTCGTATTAATATATAGTCCCAACGGAGATGTTGAAATTTATAAGAAACATTGCTTTTCGGGTGCGTTTAGAAAAAAaTATGTATTTTTGTATTTATTTAATGTGGAGTTTGTTCTTATATGGTTTGAGTTTTTGGAATATTATCTGAATTTTTGGTATGGTTTTATCAGATTTGAGAGACATGATGCGTTCTTTGGAATGTTTTTGTTTTGAGAACATTTTCTTAATGAATTCATTCTATTCTTTATACTAGATGGCATCTTCCTCCTCGTCTACATCTACCAATAGTAGTCAATCATCCTCGTTTTTACATTTTGTTTTGGATGAAAGTGTGGTCTCTATTTAGGATTTTGTATTTGTATTGTAGTTTGGAACTAGTTTGATGGATTCAGACAGCTAATGCACTCTTTATTTATGTTTTAAAGAAATATTGCTGTGCTCTACCATATATGAGTTTATCTACAAATATTATCACAAAAGTTATTTTTTtAAAAAATTATGATGTGTCGTGTCCTAGTTTCTAGAAATTGGGCATGTCGTGCTGTGTTGTGTCGCGTGCTTCGTAGATCTAGATTAGTGGGAAAATCTAAAATGAGGTGCCACACATTGGGATATCTCTTTGGCAAGACCAATGGTTGGATAGTTCTAATTTGGGTTCTGTTCTCTACTCCCAAGTCTCCTTGGAATTGTAACTAATCCTAATGGTTCAGTACTGGAGCAATGAGGTGCAACTACTCTATCTTGGTTTGTCTCTTTTAGACAGTTTTTAAGGATGAAGAAGCTTTGGATTTTCATATTTTATTGGGTTCTTTAGAAGGCTGAAGAGTTCTTCACTCGGATTCAAGAAGTTGAAAGTTGTAGTATTTAGGCTTGTTTTTCAGTTAAATCTCTTACAAGCATTTGTTGGCATCTACTCCAATTGATAAATTTCTTTACATGGAAATTAAAATGGCCTCGTCAAGTAAACATCATTATTTGGGTTATGATTTTTGGAGCTCTCAACCACTCTCTTACAATCCAAAGAAAACTTCCTGCTCACTATTTGTTACCTTCAATTTGCCCTCTATGCTTGGCAGATGATGAGAGGTCTCAACATCTCTTCTTTTGATTGTCGCTATTCAAAGACATGTTGGTGGAAGTTGTTTTCAACGTTCAATCTTCCATGGGTTTTtATTGATTGGTCCAAGGACAGTGTGTTTTTGGCTTTGAGTGAGTCCTCCCTTGAAGTTGAAGCCTCTCTCTCAAATTTTATGGTCTAAAGTCCAGTTATAGCTTTTCTCTCCAAAATTTGATTTGAAATAAAGCAATGCATTTTTCAAGACAAGTCTCTAGCATGGTCCGATCATTTTGAGTTGCTCAAGTTAAGGCTTCATCTTGGTGTTCTCTCTCCCTGCCTTATGCAGATTATTCCATTTAAGTATATGGTTAAATTGGAATGCATTTATTTTACCAACATAATTTTCTAATATTGTTTGCATCTTCGCTCTAATCCAGATCACATGCTATGAAGCTGTGCGTTTGCAAGTTGTATGTGGAATTGCTTCTTTCTGGAGTTTGGTTTTGTGCAGCTCATTTGAAAGTTATTGGGGACCTGATCGGGAAGTTCCTCCTCCATCAGTCTTTTGGTGGGAAATGTCGCTTTTTGGGGTTTGTGGGGGTGTGGGTTAGGATACCATCTAATAAGAATACTTGATAAACACAAACAACATCAAGAGGGTTCTCTCTCCCAAAGCTCCATGATAGAAACCCTCACCCCCTCCCTCTGGTGTTCAACTTGTCTTATTTATAGCCAAGATGCCACTAGTTAATGACCCATGATACCCCTTGCTAATAAGTAATACCCTACAAATCTTACCCCTATACCCCTTTAACTAGTACTCTCACAGCTTGCTCTGTTATGGGATCGTTGGGGGAGAAATAACTGAGTTTTTAAAGGTGTGGAGATAGGTCCTAATGATGTGTGTCCTTTGGTGAGGTTTCATGTTTCTTTTTCTGCTCCAATTTCTCTGTAGTTGCTTTATAGACAATATTTCTTATTTGCAACCCCATTCTGTAGCGTGTGTATGCTTTTGTATACCTTCGTTTTGTTTTTTTTtAGTAAAAACAGTTGTTTCTATTAGAAAAAATCATTGTGGAAGTGACTTTAATCATAGGCTATCAAATTATGGAAGTGTTGTATTCTTTCATTTTTTTtCTGAATGAAATTtGTTTTTTTtATCCCAAAAAGGGCTATCGAATTGTTTGAGTTGTGTTTTTCTATGTTGTTTATCAATATATTGTTGTTTAAATTGTTTCTTGTGATATTTGATGCTTTGCAAACTATGTTGTTTTTCTATGGTTCTATGTTTCTCATGTAAACTAATTACTGATACATGCCTATGTTAAACAGAACATTGTTGCGTATAAACACGAGTCAAGTGGTCTTAGGCATTAGTTTATTTTAGTGGTATTTATAGAGAGCAATTTCCCTTTAAATATTATTCTTTTTTGATCAACTTGTTTCAATCCAGTATTATCATTTTGAAAGGCAAATGGCGACTTTTATAAGGGCTCTTAACAAAGCTCATCAAGTTCTATACTTGAAAGCTTCCCCCACCATTTTGAGAAGCAAATCGATGCCCCTTTTGCCTACTGCTTTCATTGGGTTGAAGAATCTCCAAAGAGAACTAACAAATCGCAATCAGAATCACCATGGTTGTTTCTCTAGTGTCCATTTCTCTTCGACAAGTACAAATCCTGACATCGATCTCTCAAATGAAGATAGCAAGAGGCAATTATTCAATAGGTTCGTTCTTCCTTCATTTTGTTAATTAATTTTCGCATCCCTCTCGCTCTGTGTTTCTCTCAATTATTGACTCATTTGTTTTGATTGACAAGTCGTTTTGTTTGGTTGTTGGACTTAACAGGTTGCTGTACCGGAGCAAACAACGAGGGTTTTtGGAATTGGATTTGATACTTGGGAAATGGGTAGAGGATCACATCCATTCCTTAGATGCAGATGGTATTCGAGCTCTAATTAATGTTCTTGACCTGGTAATTTAGTCTTGTACTGCTGACAGACTGCGACTCACTATTTTTtCCCCCCcTTTTCTATCTTTtCTTCCTTTTTtATCTTTGCTTTTTtCTATTTTTTtCCCATTATTGTTATATATATACGGGTGAATATTTCACAATGTGTCCAAATATGCACAAATATATATATATATATATTTATATGTATATATTAGAAAAATGTATCTCCAACATGTCATGTCGTTTTGAAAATTGACATGTTGTCGTTGTGCTGTATTCAATGTCTGTTTCTTAGCTCGCAACTATCCCATAAAAATGAAAAATAGTAGAGATGCAACAAAGACTCAATAATTCTTCTACTCTTGCAGGAAAATCCAGATTTATGGAAGTGGTTAACAGGCCAAGAGCAACCCCCTGAAGCTTTGAAAACAAATCCTGTGAGCATCCAAGCATGGCATTAATTACCGAACCTTTTATCTTGATTAAATATGTGGTTTACAATTAAAGTATTGTATCATTGTAGGTATTTACTGGAGTGAAAGAGAAGGTGATAGACAATCTCAACAAACATGCCTCACCTGAGACAAGAACACCACCTGGCCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAAAGGTCGAGATGGCCCCATAACAGGAAATCAGTAGCTCTTCCCTTTAACTTTATGCCTAATCTCTCTTTTAAGTATATAAGAACAGAAAAGCCCTGCTAAGGTTTCTATATAAATGGTAGATTGGGAATAAGTTAAACCAACAAAGACTTTGAAGGGAACATTGTTTAGTATGTCTCTCCCTTTAAACCCTTGATCTATTGTATATTAATAATTTTTTtCCTTGTATGCATTTAACGGTAACTACATTGTACCGATCTTGAACACTTTGTTGTTTTGATGTGCTTACCAATATAGATTGTATTTCTTTACAA

mRNA sequence

GTCCCTTCTCTCGAAATCAAACCCTGAGCACTCTTCACTCTCCTCTAGTTCTCTCCAATTTTCAGTTCGGTTCCTCCCCTCCGATCAGAAGACGCCGGCGACCACCGCTTACCCTCTCCGATCAGACGACGACGGCGACTGAAACTCCGATCAGACCAGCCACGCTCTATCTCCGTTTTGGTTACTTGCTGTATCGGTCTAGAGGCAAATGGCGACTTTTATAAGGGCTCTTAACAAAGCTCATCAAGTTCTATACTTGAAAGCTTCCCCCACCATTTTGAGAAGCAAATCGATGCCCCTTTTGCCTACTGCTTTCATTGGGTTGAAGAATCTCCAAAGAGAACTAACAAATCGCAATCAGAATCACCATGGTTGTTTCTCTAGTGTCCATTTCTCTTCGACAAGTACAAATCCTGACATCGATCTCTCAAATGAAGATAGCAAGAGGCAATTATTCAATAGGTTGCTGTACCGGAGCAAACAACGAGGGTTTTTGGAATTGGATTTGATACTTGGGAAATGGGTAGAGGATCACATCCATTCCTTAGATGCAGATGGTATTCGAGCTCTAATTAATGTTCTTGACCTGGAAAATCCAGATTTATGGAAGTGGTTAACAGGCCAAGAGCAACCCCCTGAAGCTTTGAAAACAAATCCTGTATTTACTGGAGTGAAAGAGAAGGTGATAGACAATCTCAACAAACATGCCTCACCTGAGACAAGAACACCACCTGGCCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAAAGGTCGAGATGGCCCCATAACAGGAAATCAGTAGCTCTTCCCTTTAACTTTATGCCTAATCTCTCTTTTAAGTATATAAGAACAGAAAAGCCCTGCTAAGGTTTCTATATAAATGGTAGATTGGGAATAAGTTAAACCAACAAAGACTTTGAAGGGAACATTGTTTAGTATGTCTCTCCCTTTAAACCCTTGATCTATTGTATATTAATAATTTTTTTCCTTGTATGCATTTAACGGTAACTACATTGTACCGATCTTGAACACTTTGTTGTTTTGATGTGCTTACCAATATAGATTGTATTTCTTTACAA

Coding sequence (CDS)

ATGGCGACTTTTATAAGGGCTCTTAACAAAGCTCATCAAGTTCTATACTTGAAAGCTTCCCCCACCATTTTGAGAAGCAAATCGATGCCCCTTTTGCCTACTGCTTTCATTGGGTTGAAGAATCTCCAAAGAGAACTAACAAATCGCAATCAGAATCACCATGGTTGTTTCTCTAGTGTCCATTTCTCTTCGACAAGTACAAATCCTGACATCGATCTCTCAAATGAAGATAGCAAGAGGCAATTATTCAATAGGTTGCTGTACCGGAGCAAACAACGAGGGTTTTtGGAATTGGATTTGATACTTGGGAAATGGGTAGAGGATCACATCCATTCCTTAGATGCAGATGGTATTCGAGCTCTAATTAATGTTCTTGACCTGGAAAATCCAGATTTATGGAAGTGGTTAACAGGCCAAGAGCAACCCCCTGAAGCTTTGAAAACAAATCCTGTATTTACTGGAGTGAAAGAGAAGGTGATAGACAATCTCAACAAACATGCCTCACCTGAGACAAGAACACCACCTGGCCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAAAGGTCGAGATGGCCCCATAACAGGAAATCAGTAG

Protein sequence

MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSVHFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ*

Homology

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BLAST of Cucsa.178800.3 vs. Swiss-Prot
Match: SDAF2_ARATH (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Arabidopsis thaliana GN=SDHAF2 PE=1 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 8.7e-54
Identity = 103/193 (53.37%), Postives = 140/193 (72.54%), Query Frame = 1


Query: 6   RALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSVHFSST 65
           +AL   H+++  +++  + RS  +P          N    +  RN    G       +++
Sbjct: 5   KALINVHRII--RSTAVVGRSSIIP-------AAANRSYPIIFRNGVDLGARFFCENTAS 64

Query: 66  STNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVL 125
           + N DIDLSNE++KR+  NRLLYRSKQRGFLELDL+LG WVE++++S+D +G+++LI+VL
Sbjct: 65  AQNFDIDLSNEENKRRTINRLLYRSKQRGFLELDLVLGNWVEENVNSMDENGVKSLIHVL 124

Query: 126 DLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWVRGWDD 185
           +LENPDLWKWLT QEQPPEA+ +NPVF+ + EKV+ NLNKHA+PETR   GQ WVRGWDD
Sbjct: 125 NLENPDLWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAGQPWVRGWDD 184

Query: 186 FKKGRDGPITGNQ 199
           FK+GRD PI+GNQ
Sbjct: 185 FKRGRDAPISGNQ 188

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BLAST of Cucsa.178800.3 vs. Swiss-Prot
Match: SDHF2_DICDI (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Dictyostelium discoideum GN=DDB_G0293946 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-06
Identity = 29/79 (36.71%), Postives = 48/79 (60.76%), Query Frame = 1


Query: 71  IDLSNEDSK-RQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVLDLEN 130
           I ++NE S+  +L  +LLY+SK+RG LE DL+LG +   +IH L    +R    +L   +
Sbjct: 43  IKINNEISEIEKLRKKLLYQSKERGMLENDLLLGSFATLNIHKLTESQLRDYNLLLQQPD 102

Query: 131 PDLWKWLTGQEQPPEALKT 149
           PD++ W+  + + PE  +T
Sbjct: 103 PDIFNWILKKAEVPEEFET 121

[Close]

BLAST of Cucsa.178800.3 vs. Swiss-Prot
Match: SDHF2_CRYNB (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CNBA4490 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.3e-06
Identity = 31/100 (31.00%), Postives = 53/100 (53.00%), Query Frame = 1


Query: 71  IDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVLDLENP 130
           +D + ED K  L  RL+Y++++RG LE DLIL  +  D + ++D + ++    +LD  + 
Sbjct: 68  LDRTGEDEKT-LRARLIYQTRKRGTLETDLILSTFARDELPNMDFEEMKQFDKLLDEPDW 127

Query: 131 DLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPE 171
           D++ W   +  PP   K  P        +++ L KHA  E
Sbjct: 128 DIFYWSVKKRDPPARWKGTP--------LLEKLQKHAKNE 158

[Close]

BLAST of Cucsa.178800.3 vs. Swiss-Prot
Match: SDHF2_CRYNJ (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CNA04680 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.3e-06
Identity = 31/100 (31.00%), Postives = 53/100 (53.00%), Query Frame = 1


Query: 71  IDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVLDLENP 130
           +D + ED K  L  RL+Y++++RG LE DLIL  +  D + ++D + ++    +LD  + 
Sbjct: 68  LDRTGEDEKT-LRARLIYQTRKRGTLETDLILSTFARDELPNMDFEEMKQFDKLLDEPDW 127

Query: 131 DLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPE 171
           D++ W   +  PP   K  P        +++ L KHA  E
Sbjct: 128 DIFYWSVKKRDPPARWKGTP--------LLEKLQKHAKNE 158

[Close]

BLAST of Cucsa.178800.3 vs. Swiss-Prot
Match: SDHF2_SCHJY (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=SJAG_01895 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.9e-06
Identity = 25/83 (30.12%), Postives = 52/83 (62.65%), Query Frame = 1


Query: 75  NEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVLDLENPDLWK 134
           ++++++ L +RL+Y+S++RG LE DLIL  + ++++   + + ++   N+L+  + D+  
Sbjct: 46  SKETEKLLRSRLVYQSRKRGILETDLILSGFAKEYLSKYNVELLKEYDNLLNEADWDILY 105

Query: 135 WLTGQEQPPEALKTNPVFTGVKE 158
           W TG+ Q PE    + V   +KE
Sbjct: 106 WCTGERQAPEHWLNSRVLRDLKE 128

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BLAST of Cucsa.178800.3 vs. TrEMBL
Match: A0A0A0LKF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072460 PE=4 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 8.3e-112
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1


Query: 1   MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV 60
           MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV
Sbjct: 68  MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV 127

Query: 61  HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 120
           HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA
Sbjct: 128 HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 187

Query: 121 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 180
           LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV
Sbjct: 188 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 247

Query: 181 RGWDDFKKGRDGPITGNQ 199
           RGWDDFKKGRDGPITGNQ
Sbjct: 248 RGWDDFKKGRDGPITGNQ 265

[Close]

BLAST of Cucsa.178800.3 vs. TrEMBL
Match: A0A068TQT2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022341001 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 9.0e-58
Identity = 111/178 (62.36%), Postives = 136/178 (76.40%), Query Frame = 1


Query: 21  PTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSVHFSSTSTNPDIDLSNEDSKR 80
           P IL S +   + T+ +   N+ R +           S   F S++   +IDLSNE+SKR
Sbjct: 13  PRILNSSNQTSIATSTMSSHNIYRPILG---------SLPCFYSSNQALNIDLSNEESKR 72

Query: 81  QLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVLDLENPDLWKWLTGQE 140
           +LFNRLLYRS+QRGFLELDLILG+WVEDHIHS+D +GI+AL++VLDLENPDLWKWLTGQ 
Sbjct: 73  RLFNRLLYRSRQRGFLELDLILGRWVEDHIHSMDENGIKALVHVLDLENPDLWKWLTGQG 132

Query: 141 QPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ 199
           QPPEA++ NPVF  V+++V++NLN HASPETR  PGQ WVRGWDDFKKGRDGP  GNQ
Sbjct: 133 QPPEAVRMNPVFADVQKRVVNNLNSHASPETRATPGQPWVRGWDDFKKGRDGPAVGNQ 181

[Close]

BLAST of Cucsa.178800.3 vs. TrEMBL
Match: M5WAU4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012247mg PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.0e-57
Identity = 105/150 (70.00%), Postives = 127/150 (84.67%), Query Frame = 1


Query: 49  RNQNHHGCFSSVHFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVED 108
           R Q  +G     +   T++N DIDLSN++SKR+LFNRL+YRSKQRGFLELDL+LGKWVE+
Sbjct: 29  RPQYGYGLVQRSYSIGTTSNLDIDLSNQESKRRLFNRLIYRSKQRGFLELDLVLGKWVEE 88

Query: 109 HIHSLDADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHAS 168
           HIHS+D +GI++L++VLDLENP LWKWL GQEQPPEALKTNPVFT V+ KV++NLN +A+
Sbjct: 89  HIHSMDENGIKSLVDVLDLENPYLWKWLIGQEQPPEALKTNPVFTAVRNKVLNNLNSYAA 148

Query: 169 PETRTPPGQQWVRGWDDFKKGRDGPITGNQ 199
           PETR  PGQ WVRGWDD KKG+ GPITGNQ
Sbjct: 149 PETRATPGQPWVRGWDDIKKGQGGPITGNQ 178

[Close]

BLAST of Cucsa.178800.3 vs. TrEMBL
Match: V4TAF7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032866mg PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.6e-57
Identity = 102/136 (75.00%), Postives = 125/136 (91.91%), Query Frame = 1


Query: 63  SSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALI 122
           S+T+ + DIDLSNE+ K++LFNRLLYRSKQRGFLELDL+LGKWVE+HIHS+D +GI+AL+
Sbjct: 47  SNTTQSLDIDLSNEEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDKNGIKALV 106

Query: 123 NVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWVRG 182
           +VL+LENPDLWKWLTGQEQPPEA+KTNPVF+ +  KV++NLN +ASPETR+ PGQ WVRG
Sbjct: 107 DVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLNSYASPETRSEPGQPWVRG 166

Query: 183 WDDFKKGRDGPITGNQ 199
           WDDFKKGRD P++GNQ
Sbjct: 167 WDDFKKGRDSPLSGNQ 182

[Close]

BLAST of Cucsa.178800.3 vs. TrEMBL
Match: A0A061G020_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_014776 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.6e-57
Identity = 121/198 (61.11%), Postives = 144/198 (72.73%), Query Frame = 1


Query: 1   MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV 60
           MAT  RAL  AH+         IL S ++P   T  I     Q    +R       FSS 
Sbjct: 1   MATLRRALLNAHR---------ILNSSTVPSRTTIVI---RPQYGWVSR-------FSST 60

Query: 61  HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 120
           + S+T    DIDLS+E+SKR+LFNRLLYRSKQRGFLELDL+LGKWVE+HI+S+D +GI+A
Sbjct: 61  NISNTQPL-DIDLSSEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEEHIYSMDENGIKA 120

Query: 121 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 180
           L++VLDLENPDLWKWLTGQEQPPE +  NPVF+ V+EKV+ NLN H++PETR  PGQ WV
Sbjct: 121 LVHVLDLENPDLWKWLTGQEQPPETVSINPVFSTVQEKVLKNLNSHSAPETRATPGQPWV 178

Query: 181 RGWDDFKKGRDGPITGNQ 199
           RGWDD KKGRD PITGNQ
Sbjct: 181 RGWDDIKKGRDSPITGNQ 178

[Close]

BLAST of Cucsa.178800.3 vs. TAIR10
Match: AT5G51040.3 (AT5G51040.3 unknown protein)

HSP 1 Score: 203.8 bits (517), Expect = 1.0e-52
Identity = 103/202 (50.99%), Postives = 140/202 (69.31%), Query Frame = 1


Query: 6   RALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSVHFSST 65
           +AL   H+++  +++  + RS  +P          N    +  RN    G       +++
Sbjct: 5   KALINVHRII--RSTAVVGRSSIIP-------AAANRSYPIIFRNGVDLGARFFCENTAS 64

Query: 66  STNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVL 125
           + N DIDLSNE++KR+  NRLLYRSKQRGFLELDL+LG WVE++++S+D +G+++LI+VL
Sbjct: 65  AQNFDIDLSNEENKRRTINRLLYRSKQRGFLELDLVLGNWVEENVNSMDENGVKSLIHVL 124

Query: 126 DL---------ENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPG 185
           +L         ENPDLWKWLT QEQPPEA+ +NPVF+ + EKV+ NLNKHA+PETR   G
Sbjct: 125 NLVESEATKLLENPDLWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAG 184

Query: 186 QQWVRGWDDFKKGRDGPITGNQ 199
           Q WVRGWDDFK+GRD PI+GNQ
Sbjct: 185 QPWVRGWDDFKRGRDAPISGNQ 197

[Close]

BLAST of Cucsa.178800.3 vs. NCBI nr
Match: gi|449470271|ref|XP_004152841.1| (PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Cucumis sativus])

HSP 1 Score: 411.0 bits (1055), Expect = 1.2e-111
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1


Query: 1   MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV 60
           MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV
Sbjct: 1   MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV 60

Query: 61  HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 120
           HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA
Sbjct: 61  HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 120

Query: 121 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 180
           LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV
Sbjct: 121 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 180

Query: 181 RGWDDFKKGRDGPITGNQ 199
           RGWDDFKKGRDGPITGNQ
Sbjct: 181 RGWDDFKKGRDGPITGNQ 198

[Close]

BLAST of Cucsa.178800.3 vs. NCBI nr
Match: gi|700206113|gb|KGN61232.1| (hypothetical protein Csa_2G072460 [Cucumis sativus])

HSP 1 Score: 411.0 bits (1055), Expect = 1.2e-111
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1


Query: 1   MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV 60
           MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV
Sbjct: 68  MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV 127

Query: 61  HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 120
           HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA
Sbjct: 128 HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 187

Query: 121 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 180
           LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV
Sbjct: 188 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 247

Query: 181 RGWDDFKKGRDGPITGNQ 199
           RGWDDFKKGRDGPITGNQ
Sbjct: 248 RGWDDFKKGRDGPITGNQ 265

[Close]

BLAST of Cucsa.178800.3 vs. NCBI nr
Match: gi|659082578|ref|XP_008441916.1| (PREDICTED: uncharacterized protein LOC103485912 [Cucumis melo])

HSP 1 Score: 385.2 bits (988), Expect = 7.0e-104
Identity = 184/198 (92.93%), Postives = 191/198 (96.46%), Query Frame = 1


Query: 1   MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV 60
           MATFIRAL+KAHQVLYLKASPTILRSK MP LP+ FIGL+NLQ +LTNRNQNHHGC  S+
Sbjct: 3   MATFIRALSKAHQVLYLKASPTILRSKLMPFLPSVFIGLENLQSQLTNRNQNHHGCSFSL 62

Query: 61  HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 120
           HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIR 
Sbjct: 63  HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRD 122

Query: 121 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 180
           LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKV++NLNKHASPETRTPPGQQWV
Sbjct: 123 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVMNNLNKHASPETRTPPGQQWV 182

Query: 181 RGWDDFKKGRDGPITGNQ 199
           RGWDDFKKGRDGPITGNQ
Sbjct: 183 RGWDDFKKGRDGPITGNQ 200

[Close]

BLAST of Cucsa.178800.3 vs. NCBI nr
Match: gi|661898327|emb|CDO98294.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 231.5 bits (589), Expect = 1.3e-57
Identity = 111/178 (62.36%), Postives = 136/178 (76.40%), Query Frame = 1


Query: 21  PTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSVHFSSTSTNPDIDLSNEDSKR 80
           P IL S +   + T+ +   N+ R +           S   F S++   +IDLSNE+SKR
Sbjct: 13  PRILNSSNQTSIATSTMSSHNIYRPILG---------SLPCFYSSNQALNIDLSNEESKR 72

Query: 81  QLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVLDLENPDLWKWLTGQE 140
           +LFNRLLYRS+QRGFLELDLILG+WVEDHIHS+D +GI+AL++VLDLENPDLWKWLTGQ 
Sbjct: 73  RLFNRLLYRSRQRGFLELDLILGRWVEDHIHSMDENGIKALVHVLDLENPDLWKWLTGQG 132

Query: 141 QPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ 199
           QPPEA++ NPVF  V+++V++NLN HASPETR  PGQ WVRGWDDFKKGRDGP  GNQ
Sbjct: 133 QPPEAVRMNPVFADVQKRVVNNLNSHASPETRATPGQPWVRGWDDFKKGRDGPAVGNQ 181

[Close]

BLAST of Cucsa.178800.3 vs. NCBI nr
Match: gi|595849161|ref|XP_007209673.1| (hypothetical protein PRUPE_ppa012247mg [Prunus persica])

HSP 1 Score: 230.3 bits (586), Expect = 2.9e-57
Identity = 105/150 (70.00%), Postives = 127/150 (84.67%), Query Frame = 1


Query: 49  RNQNHHGCFSSVHFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVED 108
           R Q  +G     +   T++N DIDLSN++SKR+LFNRL+YRSKQRGFLELDL+LGKWVE+
Sbjct: 29  RPQYGYGLVQRSYSIGTTSNLDIDLSNQESKRRLFNRLIYRSKQRGFLELDLVLGKWVEE 88

Query: 109 HIHSLDADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHAS 168
           HIHS+D +GI++L++VLDLENP LWKWL GQEQPPEALKTNPVFT V+ KV++NLN +A+
Sbjct: 89  HIHSMDENGIKSLVDVLDLENPYLWKWLIGQEQPPEALKTNPVFTAVRNKVLNNLNSYAA 148

Query: 169 PETRTPPGQQWVRGWDDFKKGRDGPITGNQ 199
           PETR  PGQ WVRGWDD KKG+ GPITGNQ
Sbjct: 149 PETRATPGQPWVRGWDDIKKGQGGPITGNQ 178

The following BLAST results are available for this feature:

BLAST of Cucsa.178800.3 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SDAF2_ARATH	8.7e-54	53.37	Succinate dehydrogenase assembly factor 2, mitochondrial OS=Arabidopsis thaliana...	[more]
SDHF2_DICDI	1.4e-06	36.71	Succinate dehydrogenase assembly factor 2, mitochondrial OS=Dictyostelium discoi...	[more]
SDHF2_CRYNB	2.3e-06	31.00	Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoform...	[more]
SDHF2_CRYNJ	2.3e-06	31.00	Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoform...	[more]
SDHF2_SCHJY	3.9e-06	30.12	Succinate dehydrogenase assembly factor 2, mitochondrial OS=Schizosaccharomyces ...	[more]

BLAST of Cucsa.178800.3 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKF9_CUCSA	8.3e-112	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072460 PE=4 SV=1	[more]
A0A068TQT2_COFCA	9.0e-58	62.36	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022341001 PE=4 SV=1	[more]
M5WAU4_PRUPE	2.0e-57	70.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012247mg PE=4 SV=1	[more]
V4TAF7_9ROSI	2.6e-57	75.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032866mg PE=4 SV=1	[more]
A0A061G020_THECC	2.6e-57	61.11	Uncharacterized protein OS=Theobroma cacao GN=TCM_014776 PE=4 SV=1	[more]

BLAST of Cucsa.178800.3 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G51040.3	1.0e-52	50.99	unknown protein	[more]

BLAST of Cucsa.178800.3 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449470271\|ref\|XP_004152841.1\|	1.2e-111	100.00	PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Cucumis sat...	[more]
gi\|700206113\|gb\|KGN61232.1\|	1.2e-111	100.00	hypothetical protein Csa_2G072460 [Cucumis sativus]	[more]
gi\|659082578\|ref\|XP_008441916.1\|	7.0e-104	92.93	PREDICTED: uncharacterized protein LOC103485912 [Cucumis melo]	[more]
gi\|661898327\|emb\|CDO98294.1\|	1.3e-57	62.36	unnamed protein product [Coffea canephora]	[more]
gi\|595849161\|ref\|XP_007209673.1\|	2.9e-57	70.00	hypothetical protein PRUPE_ppa012247mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005631	SDH

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.178800	Cucsa.178800	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.178800.3	Cucsa.178800.3-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.178800.3.five_prime_UTR.1	Cucsa.178800.3.five_prime_UTR.1	five_prime_UTR
Cucsa.178800.3.five_prime_UTR.2	Cucsa.178800.3.five_prime_UTR.2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.178800.3.CDS.1	Cucsa.178800.3.CDS.1	CDS
Cucsa.178800.3.CDS.2	Cucsa.178800.3.CDS.2	CDS
Cucsa.178800.3.CDS.3	Cucsa.178800.3.CDS.3	CDS
Cucsa.178800.3.CDS.4	Cucsa.178800.3.CDS.4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.178800.3.three_prime_UTR.1	Cucsa.178800.3.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005631	Flavinator of succinate dehydrogenase	GENE3D	G3DSA:1.10.150.250		coord: 78..163 score: 2.4
IPR005631	Flavinator of succinate dehydrogenase	PFAM	PF03937	Sdh5	coord: 84..152 score: 4.5
IPR005631	Flavinator of succinate dehydrogenase	unknown	SSF109910	YgfY-like	coord: 84..149 score: 2.09
None	No IPR available	PANTHER	PTHR12469	PROTEIN EMI5 HOMOLOG, MITOCHONDRIAL	coord: 69..179 score: 1.7