Csa2G072460 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G072460
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionSuccinate dehydrogenase assembly factor 2, mitochondrial; contains IPR005631 (Protein of unknown function DUF339)
LocationChr2 : 5597053 .. 5602617 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTGTAAAGAGGTTAGTAGAATGTGTAAAGTGACCAGGTAAGTAGTGTCAAGACTAAGTCATACATGTATGAGGTGAAAAGTGTGAGTAGGAGGTGTCATCACCAAATGCAAGGATTAATATAAATAAGGAAACTTTGGAGAAGGAATGCTACAAACTACTCGTTCATATGCTTCATTCCACTTTCACAATCTCCTAAATTGTGTCTAATAACAAGGGTAGGGCTTCTAGATCACAAGGAATGGAGAAAGAAGGTCAACAACATTTATGGGTGAAATTTTTAGTTGGAAGTGCACTTTTAGGTTTTTAGGATATATTGAAATTTTTATAGAATTTTATGAAGGATATTTTGCAAGTGTTTTAAAGTAGAACCTTCATGCTTTTATCTAAACTCACGAAGCTAGCACACATTTTTTAGAGAGTCAATGCCAAACACATATTCTACAAACACCCTGTAGAACACGTGGAAAGGGACATGTTAATTTTTTTTTAATATTATTTTCTAGGCAAAATGCACTTTTGATCCTTAAGGTTTAGTGTTATTGTCTATTTGGTATCTGAGGTTTCAAAAGTGACACTTGAATTTTCGAGATTTGGAAAATAGTTCTAAATAGTCCCTATGTTAAAGTTGACCAACGAAAAAAATGATATGATTCGTCATCTTCTTCCTCAACAAACTTGTCTCCGCCGTCCGTACCTTGTTTGATTCCGACATCAAAATCAATGTATTTTCTCCTCATCTTTTCAAATTCAATCACCAAATTAAATATTTTTTCTTCATTTTCTAGAAAAAAAAAATGGGCCAAAGAAAAAGAAGAATGAAAAGCTCGGTTCTAAGCTATGTTCTTTGGTTCCTTGAATCTCATTCCAATTCCTCATTAATGAATCCTAACACAAAATTCCCAATCGAAACAAACCAAATCTCATTCTCCCATTTACCCCTAAAAAAGGATTCCAAGAAATCAGATAACCAAAAAGACAAAAAAGAAAGGAAACCCCATTTATCTATAGGTGATGAAAAACAAAGCAATCCCCAAAAAGAAAAAACTTTGTGATCATGAACTTACATCTTTATATACCGTTAATGGCGAATAAAAAGTAACTAAAATTATTGCTATTAGCCTATTTTAGTACCACGTCCTTTCTTTTGGCTAGTCGACTAACTATCCACTTTAACAAAGACACCATTTAAAATTATTTTTTAAGTTTAGAAACGGTGAAACGAATAAATAACAACAAACCTCTCAACCACCCAAAGTCCCTTCTCTCGAAATCAAACCCTGAGCACTCTTCACTCTCCTCTAGTTCTCTCCAATTTTCAGTTCGGTTCCTCCCCTCCGATCAGAAGACGCCGGCGACCACCGCTTACCCTCTCCGATCAGACGACGACGGCGACTGAAACTCCGATCAGACCAGCCACGCTCTATCTCCGTTTTGGTTACTTGCTGTATCGGTCTAGAGGTTTTTATCTTTTCTTTTCTTTTCTTTAATGTGTATCAATGTTTGAGGAATGTTTCAACTGCTTTGACCGAACATATATATATATATATATATATATATATATNNNNNNNNNNNATATATATATATATGCTTTTTTATTCCTTACTTCGTATTAATATATAGTCCCAACGGAGATGTTGAAATTTATAAGAAACATTGCTTTTCGGGTGCGTTTAGAAAAAAATATGTATTTTTGTATTTATTTAATGTGGAGTTTGTTCTTATATGGTTTGAGTTTTTGGAATATTATCTGAATTTTTGGTATGGTTTTATCAGATTTGAGAGACATGATGCGTTCTTTGGAATGTTTTTGTTTTGAGAACATTTTCTTAATGAATTCATTCTATTCTTTATACTAGATGGCATCTTCCTCCTCGTCTACATCTACCAATAGTAGTCAATCATCCTCGTTTTTACATTTTGTTTTGGATGAAAGTGTGGTCTCTATTTAGGATTTTGTATTTGTATTGTAGTTTGGAACTAGTTTGATGGATTCAGACAGCTAATGCACTCTTTATTTATGTTTTAAAGAAATATTGCTGTGCTCTACCATATATGAGTTTATCTACAAATATTATCACAAAAGTTATTTTTTTAAAAAATTATGATGTGTCGTGTCCTAGTTTCTAGAAATTGGGCATGTCGTGCTGTGTTGTGTCGCGTGCTTCGTAGATCTAGATTAGTGGGAAAATCTAAAATGAGGTGCCACACATTGGGATATCTCTTTGGCAAGACCAATGGTTGGATAGTTCTAATTTGGGTTCTGTTCTCTACTCCCAAGTCTCCTTGGAATTGTAACTAATCCTAATGGTTCAGTACTGGAGCAATGAGGTGCAACTACTCTATCTTGGTTTGTCTCTTTTAGACAGTTTTTAAGGATGAAGAAGCTTTGGATTTTCATATTTTATTGGGTTCTTTAGAAGGCTGAAGAGTTCTTCACTCGGATTCAAGAAGTTGAAAGTTGTAGTATTTAGGCTTGTTTTTCAGTTAAATCTCTTACAAGCATTTGTTGGCATCTACTCCAATTGATAAATTTCTTTACATGGAAATTAAAATGGCCTCGTCAAGTAAACATCATTATTTGGGTTATGATTTTTGGAGCTCTCAACCACTCTCTTACAATCCAAAGAAAACTTCCTGCTCACTATTTGTTACCTTCAATTTGCCCTCTATGCTTGGCAGATGATGAGAGGTCTCAACATCTCTTCTTTTGATTGTCGCTATTCAAAGACATGTTGGTGGAAGTTGTTTTCAACGTTCAATCTTCCATGGGTTTTTATTGATTGGTCCAAGGACAGTGTGTTTTTGGCTTTGAGTGAGTCCTCCCTTGAAGTTGAAGCCTCTCTCTCAAATTTTATGGTCTAAAGTCCAGTTATAGCTTTTCTCTCCAAAATTTGATTTGAAATAAAGCAATGCATTTTTCAAGACAAGTCTCTAGCATGGTCCGATCATTTTGAGTTGCTCAAGTTAAGGCTTCATCTTGGTGTTCTCTCTCCCTGCCTTATGCAGATTATTCCATTTAAGTATATGGTTAAATTGGAATGCATTTATTTTACCAACATAATTTTCTAATATTGTTTGCATCTTCGCTCTAATCCAGATCACATGCTATGAAGCTGTGCGTTTGCAAGTTGTATGTGGAATTGCTTCTTTCTGGAGTTTGGTTTTGTGCAGCTCATTTGAAAGTTATTGGGGACCTGATCGGGAAGTTCCTCCTCCATCAGTCTTTTGGTGGGAAATGTCGCTTTTTGGGGTTTGTGGGGGTGTGGGTTAGGATACCATCTAATAAGAATACTTGATAAACACAAACAACATCAAGAGGGTTCTCTCTCCCAAAGCTCCATGATAGAAACCCTCACCCCCTCCCTCTGGTGTTCAACTTGTCTTATTTATAGCCAAGATGCCACTAGTTAATGACCCATGATACCCCTTGCTAATAAGTAATACCCTACAAATCTTACCCCTATACCCCTTTAACTAGTACTCTCACAGCTTGCTCTGTTATGGGATCGTTGGGGGAGAAATAACTGAGTTTTTAAAGGTGTGGAGATAGGTCCTAATGATGTGTGTCCTTTGGTGAGGTTTCATGTTTCTTTTTCTGCTCCAATTTCTCTGTAGTTGCTTTATAGACAATATTTCTTATTTGCAACCCCATTCTGTAGCGTGTGTATGCTTTTGTATACCTTCGTTTTGTTTTTTTTTAGTAAAAACAGTTGTTTCTATTAGAAAAAATCATTGTGGAAGTGACTTTAATCATAGGCTATCAAATTATGGAAGTGTTGTATTCTTTCATTTTTTTTCTGAATGAAATTTGTTTTTTTTATCCCAAAAAGGGCTATCGAATTGTTTGAGTTGTGTTTTTCTATGTTGTTTATCAATATATTGTTGTTTAAATTGTTTCTTGTGATATTTGATGCTTTGCAAACTATGTTGTTTTTCTATGGTTCTATGTTTCTCATGTAAACTAATTACTGATACATGCCTATGTTAAACAGAACATTGTTGCGTATAAACACGAGTCAAGTGGTCTTAGGCATTAGTTTATTTTAGTGGTATTTATAGAGAGCAATTTCCCTTTAAATATTATTCTTTTTTGATCAACTTGTTTCAATCCAGTATTATCATTTTGAAAGGCAAATGGCGACTTTTATAAGGGCTCTTAACAAAGCTCATCAAGTTCTATACTTGAAAGCTTCCCCCACCATTTTGAGAAGCAAATCGATGCCCCTTTTGCCTACTGCTTTCATTGGGTTGAAGAATCTCCAAAGAGAACTAACAAATCGCAATCAGAATCACCATGGTTGTTTCTCTAGTGTCCATTTCTCTTCGACAAGTACAAATCCTGACATCGATCTCTCAAATGAAGATAGCAAGAGGCAATTATTCAATAGGTTCGTTCTTCCTTCATTTTGTTAATTAATTTTCGCATCCCTCTCGCTCTGTGTTTCTCTCAATTATTGACTCATTTGTTTTGATTGACAAGTCGTTTTGTTTGGTTGTTGGACTTAACAGGTTGCTGTACCGGAGCAAACAACGAGGGTTTTTGGAATTGGATTTGATACTTGGGAAATGGGTAGAGGATCACATCCATTCCTTAGATGCAGATGGTATTCGAGCTCTAATTAATGTTCTTGACCTGGTAATTTAGTCTTGTACTGCTGACAGACTGCGACTCACTATTTTTTCCCCCCCTTTTCTATCTTTTCTTCCTTTTTTATCTTTGCTTTTTTCTATTTTTTTCCCATTATTGTTATATATATACGGGTGAATATTTCACAATGTGTCCAAATATGCACAAATATATATATATATATATTTATATGTATATATTAGAAAAATGTATCTCCAACATGTCATGTCGTTTTGAAAATTGACATGTTGTCGTTGTGCTGTATTCAATGTCTGTTTCTTAGCTCGCAACTATCCCATAAAAATGAAAAATAGTAGAGATGCAACAAAGACTCAATAATTCTTCTACTCTTGCAGGAAAATCCAGATTTATGGAAGTGGTTAACAGGCCAAGAGCAACCCCCTGAAGCTTTGAAAACAAATCCTGTGAGCATCCAAGCATGGCATTAATTACCGAACCTTTTATCTTGATTAAATATGTGGTTTACAATTAAAGTATTGTATCATTGTAGGTATTTACTGGAGTGAAAGAGAAGGTGATAGACAATCTCAACAAACATGCCTCACCTGAGACAAGAACACCACCTGGCCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAAAGGTCGAGATGGCCCCATAACAGGAAATCAGTAGCTCTTCCCTTTAACTTTATGCCTAATCTCTCTTTTAAGTATATAAGAACAGAAAAGCCCTGCTAAGGTTTCTATATAAATGGTAGATTGGGAATAAGTTAAACCAACAAAGACTTTGAAGGGAACATTGTTTAGTATGTCTCTCCCTTTAAACCCTTGATCTATTGTATATTAATAATTTTTTTCCTTGTATGCATTTAACGGTAACTACATTGTACCGATCTTGAACACTTTGTTGTTTTGATGTGCTTACCAATATAGATTGTATTTCTTTA

mRNA sequence

ATGAGGTGTAAAGAGGTTAGTAGAATGTGTAAAGTGACCAGTTCGGTTCCTCCCCTCCGATCAGAAGACGCCGGCGACCACCGCTTACCCTCTCCGATCAGACGACGACGGCGACTGAAACTCCGATCAGACCAGCCACGCTCTATCTCCGTTTTGGTTACTTGCTGTATCGGTCTAGAGTATTATCATTTTGAAAGGCAAATGGCGACTTTTATAAGGGCTCTTAACAAAGCTCATCAAGTTCTATACTTGAAAGCTTCCCCCACCATTTTGAGAAGCAAATCGATGCCCCTTTTGCCTACTGCTTTCATTGGGTTGAAGAATCTCCAAAGAGAACTAACAAATCGCAATCAGAATCACCATGGTTGTTTCTCTAGTGTCCATTTCTCTTCGACAAGTACAAATCCTGACATCGATCTCTCAAATGAAGATAGCAAGAGGCAATTATTCAATAGGTTGCTGTACCGGAGCAAACAACGAGGGTTTTTGGAATTGGATTTGATACTTGGGAAATGGGTAGAGGATCACATCCATTCCTTAGATGCAGATGGTATTCGAGCTCTAATTAATGTTCTTGACCTGGAAAATCCAGATTTATGGAAGTGGTTAACAGGCCAAGAGCAACCCCCTGAAGCTTTGAAAACAAATCCTGTATTTACTGGAGTGAAAGAGAAGGTGATAGACAATCTCAACAAACATGCCTCACCTGAGACAAGAACACCACCTGGCCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAAAGGTCGAGATGGCCCCATAACAGGAAATCAGTAG

Coding sequence (CDS)

ATGAGGTGTAAAGAGGTTAGTAGAATGTGTAAAGTGACCAGTTCGGTTCCTCCCCTCCGATCAGAAGACGCCGGCGACCACCGCTTACCCTCTCCGATCAGACGACGACGGCGACTGAAACTCCGATCAGACCAGCCACGCTCTATCTCCGTTTTGGTTACTTGCTGTATCGGTCTAGAGTATTATCATTTTGAAAGGCAAATGGCGACTTTTATAAGGGCTCTTAACAAAGCTCATCAAGTTCTATACTTGAAAGCTTCCCCCACCATTTTGAGAAGCAAATCGATGCCCCTTTTGCCTACTGCTTTCATTGGGTTGAAGAATCTCCAAAGAGAACTAACAAATCGCAATCAGAATCACCATGGTTGTTTCTCTAGTGTCCATTTCTCTTCGACAAGTACAAATCCTGACATCGATCTCTCAAATGAAGATAGCAAGAGGCAATTATTCAATAGGTTGCTGTACCGGAGCAAACAACGAGGGTTTTTGGAATTGGATTTGATACTTGGGAAATGGGTAGAGGATCACATCCATTCCTTAGATGCAGATGGTATTCGAGCTCTAATTAATGTTCTTGACCTGGAAAATCCAGATTTATGGAAGTGGTTAACAGGCCAAGAGCAACCCCCTGAAGCTTTGAAAACAAATCCTGTATTTACTGGAGTGAAAGAGAAGGTGATAGACAATCTCAACAAACATGCCTCACCTGAGACAAGAACACCACCTGGCCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAAAGGTCGAGATGGCCCCATAACAGGAAATCAGTAG

Protein sequence

MRCKEVSRMCKVTSSVPPLRSEDAGDHRLPSPIRRRRRLKLRSDQPRSISVLVTCCIGLEYYHFERQMATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSVHFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ*
Homology
[Close]
BLAST of Csa2G072460 vs. Swiss-Prot
Match: SDAF2_ARATH (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Arabidopsis thaliana GN=SDHAF2 PE=1 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.2e-53
Identity = 103/193 (53.37%), Postives = 138/193 (71.50%), Query Frame = 1 

Query: 73  RALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSVHFSST 132
           +AL   H+++  +++  + RS  +P          N    +  RN    G       +++
Sbjct: 5   KALINVHRII--RSTAVVGRSSIIP-------AAANRSYPIIFRNGVDLGARFFCENTAS 64

Query: 133 STNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVL 192
           + N DIDLSNE++KR+  NRLLYRSKQRGFLELDL+LG WVE++++S+D +G+++LI+VL
Sbjct: 65  AQNFDIDLSNEENKRRTINRLLYRSKQRGFLELDLVLGNWVEENVNSMDENGVKSLIHVL 124

Query: 193 DLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWVRGWDD 252
           +LENPDLWKWLT QEQPPEA+ +NPVF+ + EKV+ NLNKHA+PETR   GQ WVRGWDD
Sbjct: 125 NLENPDLWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAGQPWVRGWDD 184

Query: 253 FKKGRDGPITGNQ 266
           FK+GRD PI+GNQ
Sbjct: 185 FKRGRDAPISGNQ 188

[Close]
BLAST of Csa2G072460 vs. Swiss-Prot
Match: SDHF2_DICDI (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Dictyostelium discoideum GN=DDB_G0293946 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.8e-06
Identity = 29/79 (36.71%), Postives = 47/79 (59.49%), Query Frame = 1 

Query: 138 IDLSNEDSK-RQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVLDLEN 197
           I ++NE S+  +L  +LLY+SK+RG LE DL+LG +   +IH L    +R    +L   +
Sbjct: 43  IKINNEISEIEKLRKKLLYQSKERGMLENDLLLGSFATLNIHKLTESQLRDYNLLLQQPD 102

Query: 198 PDLWKWLTGQEQPPEALKT 216
           PD++ W+  + + PE  +T
Sbjct: 103 PDIFNWILKKAEVPEEFET 121

[Close]
BLAST of Csa2G072460 vs. Swiss-Prot
Match: SDHF2_CRYNJ (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CNA04680 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.1e-06
Identity = 31/100 (31.00%), Postives = 51/100 (51.00%), Query Frame = 1 

Query: 138 IDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVLDLENP 197
           +D + ED K  L  RL+Y++++RG LE DLIL  +  D + ++D + ++    +LD  + 
Sbjct: 68  LDRTGEDEKT-LRARLIYQTRKRGTLETDLILSTFARDELPNMDFEEMKQFDKLLDEPDW 127

Query: 198 DLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPE 238
           D++ W   +  PP   K  P        +++ L KHA  E
Sbjct: 128 DIFYWSVKKRDPPARWKGTP--------LLEKLQKHAKNE 158

[Close]
BLAST of Csa2G072460 vs. Swiss-Prot
Match: SDHF2_CRYNB (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CNBA4490 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.1e-06
Identity = 31/100 (31.00%), Postives = 51/100 (51.00%), Query Frame = 1 

Query: 138 IDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVLDLENP 197
           +D + ED K  L  RL+Y++++RG LE DLIL  +  D + ++D + ++    +LD  + 
Sbjct: 68  LDRTGEDEKT-LRARLIYQTRKRGTLETDLILSTFARDELPNMDFEEMKQFDKLLDEPDW 127

Query: 198 DLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPE 238
           D++ W   +  PP   K  P        +++ L KHA  E
Sbjct: 128 DIFYWSVKKRDPPARWKGTP--------LLEKLQKHAKNE 158

[Close]
BLAST of Csa2G072460 vs. Swiss-Prot
Match: SDHF2_SCHJY (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=SJAG_01895 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.3e-06
Identity = 25/83 (30.12%), Postives = 50/83 (60.24%), Query Frame = 1 

Query: 142 NEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVLDLENPDLWK 201
           ++++++ L +RL+Y+S++RG LE DLIL  + ++++   + + ++   N+L+  + D+  
Sbjct: 46  SKETEKLLRSRLVYQSRKRGILETDLILSGFAKEYLSKYNVELLKEYDNLLNEADWDILY 105

Query: 202 WLTGQEQPPEALKTNPVFTGVKE 225
           W TG+ Q PE    + V   +KE
Sbjct: 106 WCTGERQAPEHWLNSRVLRDLKE 128

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BLAST of Csa2G072460 vs. TrEMBL
Match: A0A0A0LKF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072460 PE=4 SV=1)

HSP 1 Score: 547.4 bits (1409), Expect = 9.9e-153
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 1 

Query: 1   MRCKEVSRMCKVTSSVPPLRSEDAGDHRLPSPIRRRRRLKLRSDQPRSISVLVTCCIGLE 60
           MRCKEVSRMCKVTSSVPPLRSEDAGDHRLPSPIRRRRRLKLRSDQPRSISVLVTCCIGLE
Sbjct: 1   MRCKEVSRMCKVTSSVPPLRSEDAGDHRLPSPIRRRRRLKLRSDQPRSISVLVTCCIGLE 60

Query: 61  YYHFERQMATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNH 120
           YYHFERQMATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNH
Sbjct: 61  YYHFERQMATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNH 120

Query: 121 HGCFSSVHFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSL 180
           HGCFSSVHFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSL
Sbjct: 121 HGCFSSVHFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSL 180

Query: 181 DADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRT 240
           DADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRT
Sbjct: 181 DADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRT 240

Query: 241 PPGQQWVRGWDDFKKGRDGPITGNQ 266
           PPGQQWVRGWDDFKKGRDGPITGNQ
Sbjct: 241 PPGQQWVRGWDDFKKGRDGPITGNQ 265

[Close]
BLAST of Csa2G072460 vs. TrEMBL
Match: A0A068TQT2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022341001 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.2e-57
Identity = 111/178 (62.36%), Postives = 136/178 (76.40%), Query Frame = 1 

Query: 88  PTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSVHFSSTSTNPDIDLSNEDSKR 147
           P IL S +   + T+ +   N+ R +           S   F S++   +IDLSNE+SKR
Sbjct: 13  PRILNSSNQTSIATSTMSSHNIYRPILG---------SLPCFYSSNQALNIDLSNEESKR 72

Query: 148 QLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVLDLENPDLWKWLTGQE 207
           +LFNRLLYRS+QRGFLELDLILG+WVEDHIHS+D +GI+AL++VLDLENPDLWKWLTGQ 
Sbjct: 73  RLFNRLLYRSRQRGFLELDLILGRWVEDHIHSMDENGIKALVHVLDLENPDLWKWLTGQG 132

Query: 208 QPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ 266
           QPPEA++ NPVF  V+++V++NLN HASPETR  PGQ WVRGWDDFKKGRDGP  GNQ
Sbjct: 133 QPPEAVRMNPVFADVQKRVVNNLNSHASPETRATPGQPWVRGWDDFKKGRDGPAVGNQ 181

[Close]
BLAST of Csa2G072460 vs. TrEMBL
Match: M5WAU4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012247mg PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.7e-57
Identity = 105/150 (70.00%), Postives = 127/150 (84.67%), Query Frame = 1 

Query: 116 RNQNHHGCFSSVHFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVED 175
           R Q  +G     +   T++N DIDLSN++SKR+LFNRL+YRSKQRGFLELDL+LGKWVE+
Sbjct: 29  RPQYGYGLVQRSYSIGTTSNLDIDLSNQESKRRLFNRLIYRSKQRGFLELDLVLGKWVEE 88

Query: 176 HIHSLDADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHAS 235
           HIHS+D +GI++L++VLDLENP LWKWL GQEQPPEALKTNPVFT V+ KV++NLN +A+
Sbjct: 89  HIHSMDENGIKSLVDVLDLENPYLWKWLIGQEQPPEALKTNPVFTAVRNKVLNNLNSYAA 148

Query: 236 PETRTPPGQQWVRGWDDFKKGRDGPITGNQ 266
           PETR  PGQ WVRGWDD KKG+ GPITGNQ
Sbjct: 149 PETRATPGQPWVRGWDDIKKGQGGPITGNQ 178

[Close]
BLAST of Csa2G072460 vs. TrEMBL
Match: V4TAF7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032866mg PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 3.5e-57
Identity = 102/136 (75.00%), Postives = 125/136 (91.91%), Query Frame = 1 

Query: 130 SSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALI 189
           S+T+ + DIDLSNE+ K++LFNRLLYRSKQRGFLELDL+LGKWVE+HIHS+D +GI+AL+
Sbjct: 47  SNTTQSLDIDLSNEEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDKNGIKALV 106

Query: 190 NVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWVRG 249
           +VL+LENPDLWKWLTGQEQPPEA+KTNPVF+ +  KV++NLN +ASPETR+ PGQ WVRG
Sbjct: 107 DVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLNSYASPETRSEPGQPWVRG 166

Query: 250 WDDFKKGRDGPITGNQ 266
           WDDFKKGRD P++GNQ
Sbjct: 167 WDDFKKGRDSPLSGNQ 182

[Close]
BLAST of Csa2G072460 vs. TrEMBL
Match: A0A061G020_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_014776 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 3.5e-57
Identity = 121/198 (61.11%), Postives = 144/198 (72.73%), Query Frame = 1 

Query: 68  MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV 127
           MAT  RAL  AH+         IL S ++P   T  I     Q    +R       FSS 
Sbjct: 1   MATLRRALLNAHR---------ILNSSTVPSRTTIVI---RPQYGWVSR-------FSST 60

Query: 128 HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 187
           + S+T    DIDLS+E+SKR+LFNRLLYRSKQRGFLELDL+LGKWVE+HI+S+D +GI+A
Sbjct: 61  NISNTQPL-DIDLSSEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEEHIYSMDENGIKA 120

Query: 188 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 247
           L++VLDLENPDLWKWLTGQEQPPE +  NPVF+ V+EKV+ NLN H++PETR  PGQ WV
Sbjct: 121 LVHVLDLENPDLWKWLTGQEQPPETVSINPVFSTVQEKVLKNLNSHSAPETRATPGQPWV 178

Query: 248 RGWDDFKKGRDGPITGNQ 266
           RGWDD KKGRD PITGNQ
Sbjct: 181 RGWDDIKKGRDSPITGNQ 178

[Close]
BLAST of Csa2G072460 vs. TAIR10
Match: AT5G51040.3 (AT5G51040.3 unknown protein)

HSP 1 Score: 203.8 bits (517), Expect = 1.4e-52
Identity = 103/202 (50.99%), Postives = 138/202 (68.32%), Query Frame = 1 

Query: 73  RALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSVHFSST 132
           +AL   H+++  +++  + RS  +P          N    +  RN    G       +++
Sbjct: 5   KALINVHRII--RSTAVVGRSSIIP-------AAANRSYPIIFRNGVDLGARFFCENTAS 64

Query: 133 STNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVL 192
           + N DIDLSNE++KR+  NRLLYRSKQRGFLELDL+LG WVE++++S+D +G+++LI+VL
Sbjct: 65  AQNFDIDLSNEENKRRTINRLLYRSKQRGFLELDLVLGNWVEENVNSMDENGVKSLIHVL 124

Query: 193 DL---------ENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPG 252
           +L         ENPDLWKWLT QEQPPEA+ +NPVF+ + EKV+ NLNKHA+PETR   G
Sbjct: 125 NLVESEATKLLENPDLWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAG 184

Query: 253 QQWVRGWDDFKKGRDGPITGNQ 266
           Q WVRGWDDFK+GRD PI+GNQ
Sbjct: 185 QPWVRGWDDFKRGRDAPISGNQ 197

[Close]
BLAST of Csa2G072460 vs. NCBI nr
Match: gi|700206113|gb|KGN61232.1| (hypothetical protein Csa_2G072460 [Cucumis sativus])

HSP 1 Score: 547.4 bits (1409), Expect = 1.4e-152
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 1 

Query: 1   MRCKEVSRMCKVTSSVPPLRSEDAGDHRLPSPIRRRRRLKLRSDQPRSISVLVTCCIGLE 60
           MRCKEVSRMCKVTSSVPPLRSEDAGDHRLPSPIRRRRRLKLRSDQPRSISVLVTCCIGLE
Sbjct: 1   MRCKEVSRMCKVTSSVPPLRSEDAGDHRLPSPIRRRRRLKLRSDQPRSISVLVTCCIGLE 60

Query: 61  YYHFERQMATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNH 120
           YYHFERQMATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNH
Sbjct: 61  YYHFERQMATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNH 120

Query: 121 HGCFSSVHFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSL 180
           HGCFSSVHFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSL
Sbjct: 121 HGCFSSVHFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSL 180

Query: 181 DADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRT 240
           DADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRT
Sbjct: 181 DADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRT 240

Query: 241 PPGQQWVRGWDDFKKGRDGPITGNQ 266
           PPGQQWVRGWDDFKKGRDGPITGNQ
Sbjct: 241 PPGQQWVRGWDDFKKGRDGPITGNQ 265

[Close]
BLAST of Csa2G072460 vs. NCBI nr
Match: gi|449470271|ref|XP_004152841.1| (PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Cucumis sativus])

HSP 1 Score: 411.0 bits (1055), Expect = 1.6e-111
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1 

Query: 68  MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV 127
           MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV
Sbjct: 1   MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV 60

Query: 128 HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 187
           HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA
Sbjct: 61  HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 120

Query: 188 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 247
           LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV
Sbjct: 121 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 180

Query: 248 RGWDDFKKGRDGPITGNQ 266
           RGWDDFKKGRDGPITGNQ
Sbjct: 181 RGWDDFKKGRDGPITGNQ 198

[Close]
BLAST of Csa2G072460 vs. NCBI nr
Match: gi|659082578|ref|XP_008441916.1| (PREDICTED: uncharacterized protein LOC103485912 [Cucumis melo])

HSP 1 Score: 387.1 bits (993), Expect = 2.5e-104
Identity = 185/199 (92.96%), Postives = 192/199 (96.48%), Query Frame = 1 

Query: 67  QMATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSS 126
           QMATFIRAL+KAHQVLYLKASPTILRSK MP LP+ FIGL+NLQ +LTNRNQNHHGC  S
Sbjct: 2   QMATFIRALSKAHQVLYLKASPTILRSKLMPFLPSVFIGLENLQSQLTNRNQNHHGCSFS 61

Query: 127 VHFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIR 186
           +HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIR
Sbjct: 62  LHFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIR 121

Query: 187 ALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQW 246
            LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKV++NLNKHASPETRTPPGQQW
Sbjct: 122 DLINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVMNNLNKHASPETRTPPGQQW 181

Query: 247 VRGWDDFKKGRDGPITGNQ 266
           VRGWDDFKKGRDGPITGNQ
Sbjct: 182 VRGWDDFKKGRDGPITGNQ 200

[Close]
BLAST of Csa2G072460 vs. NCBI nr
Match: gi|661898327|emb|CDO98294.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 231.5 bits (589), Expect = 1.7e-57
Identity = 111/178 (62.36%), Postives = 136/178 (76.40%), Query Frame = 1 

Query: 88  PTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSVHFSSTSTNPDIDLSNEDSKR 147
           P IL S +   + T+ +   N+ R +           S   F S++   +IDLSNE+SKR
Sbjct: 13  PRILNSSNQTSIATSTMSSHNIYRPILG---------SLPCFYSSNQALNIDLSNEESKR 72

Query: 148 QLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVLDLENPDLWKWLTGQE 207
           +LFNRLLYRS+QRGFLELDLILG+WVEDHIHS+D +GI+AL++VLDLENPDLWKWLTGQ 
Sbjct: 73  RLFNRLLYRSRQRGFLELDLILGRWVEDHIHSMDENGIKALVHVLDLENPDLWKWLTGQG 132

Query: 208 QPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ 266
           QPPEA++ NPVF  V+++V++NLN HASPETR  PGQ WVRGWDDFKKGRDGP  GNQ
Sbjct: 133 QPPEAVRMNPVFADVQKRVVNNLNSHASPETRATPGQPWVRGWDDFKKGRDGPAVGNQ 181

[Close]
BLAST of Csa2G072460 vs. NCBI nr
Match: gi|595849161|ref|XP_007209673.1| (hypothetical protein PRUPE_ppa012247mg [Prunus persica])

HSP 1 Score: 230.3 bits (586), Expect = 3.8e-57
Identity = 105/150 (70.00%), Postives = 127/150 (84.67%), Query Frame = 1 

Query: 116 RNQNHHGCFSSVHFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVED 175
           R Q  +G     +   T++N DIDLSN++SKR+LFNRL+YRSKQRGFLELDL+LGKWVE+
Sbjct: 29  RPQYGYGLVQRSYSIGTTSNLDIDLSNQESKRRLFNRLIYRSKQRGFLELDLVLGKWVEE 88

Query: 176 HIHSLDADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHAS 235
           HIHS+D +GI++L++VLDLENP LWKWL GQEQPPEALKTNPVFT V+ KV++NLN +A+
Sbjct: 89  HIHSMDENGIKSLVDVLDLENPYLWKWLIGQEQPPEALKTNPVFTAVRNKVLNNLNSYAA 148

Query: 236 PETRTPPGQQWVRGWDDFKKGRDGPITGNQ 266
           PETR  PGQ WVRGWDD KKG+ GPITGNQ
Sbjct: 149 PETRATPGQPWVRGWDDIKKGQGGPITGNQ 178

The following BLAST results are available for this feature:
BLAST of Csa2G072460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SDAF2_ARATH1.2e-5353.37Succinate dehydrogenase assembly factor 2, mitochondrial OS=Arabidopsis thaliana... [more]
SDHF2_DICDI1.8e-0636.71Succinate dehydrogenase assembly factor 2, mitochondrial OS=Dictyostelium discoi... [more]
SDHF2_CRYNJ3.1e-0631.00Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoform... [more]
SDHF2_CRYNB3.1e-0631.00Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoform... [more]
SDHF2_SCHJY5.3e-0630.12Succinate dehydrogenase assembly factor 2, mitochondrial OS=Schizosaccharomyces ... [more]
BLAST of Csa2G072460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKF9_CUCSA9.9e-153100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072460 PE=4 SV=1[more]
A0A068TQT2_COFCA1.2e-5762.36Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022341001 PE=4 SV=1[more]
M5WAU4_PRUPE2.7e-5770.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012247mg PE=4 SV=1[more]
V4TAF7_9ROSI3.5e-5775.00Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032866mg PE=4 SV=1[more]
A0A061G020_THECC3.5e-5761.11Uncharacterized protein OS=Theobroma cacao GN=TCM_014776 PE=4 SV=1[more]
BLAST of Csa2G072460 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G51040.31.4e-5250.99 unknown protein[more]
BLAST of Csa2G072460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206113|gb|KGN61232.1|1.4e-152100.00hypothetical protein Csa_2G072460 [Cucumis sativus][more]
gi|449470271|ref|XP_004152841.1|1.6e-111100.00PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Cucumis sat... [more]
gi|659082578|ref|XP_008441916.1|2.5e-10492.96PREDICTED: uncharacterized protein LOC103485912 [Cucumis melo][more]
gi|661898327|emb|CDO98294.1|1.7e-5762.36unnamed protein product [Coffea canephora][more]
gi|595849161|ref|XP_007209673.1|3.8e-5770.00hypothetical protein PRUPE_ppa012247mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005631SDH
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0080022 primary root development
cellular_component GO:0005575 cellular_component
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003674 molecular_function
molecular_function GO:0008177 succinate dehydrogenase (ubiquinone) activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU100383cucumber EST collection version 3.0transcribed_cluster
CU167276cucumber EST collection version 3.0transcribed_cluster
CU169266cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G072460.1Csa2G072460.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU100383CU100383transcribed_cluster
CU169266CU169266transcribed_cluster
CU167276CU167276transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005631Flavinator of succinate dehydrogenaseGENE3DG3DSA:1.10.150.250coord: 145..230
score: 4.5
IPR005631Flavinator of succinate dehydrogenasePFAMPF03937Sdh5coord: 151..219
score: 8.1
IPR005631Flavinator of succinate dehydrogenaseunknownSSF109910YgfY-likecoord: 151..216
score: 3.79
NoneNo IPR availablePANTHERPTHR12469PROTEIN EMI5 HOMOLOG, MITOCHONDRIALcoord: 136..246
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G072460MELO3C008773Melon (DHL92) v3.5.1cumeB133
Csa2G072460MELO3C008773.2Melon (DHL92) v3.6.1cumedB132
Csa2G072460CSPI02G06930Wild cucumber (PI 183967)cpicuB065
Csa2G072460Cucsa.178800Cucumber (Gy14) v1cgycuB274
Csa2G072460CsGy2G007150Cucumber (Gy14) v2cgybcuB056
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G072460Cucurbita maxima (Rimu)cmacuB165
Csa2G072460Cucurbita maxima (Rimu)cmacuB786
Csa2G072460Cucurbita moschata (Rifu)cmocuB150
Csa2G072460Cucurbita moschata (Rifu)cmocuB779
Csa2G072460Watermelon (Charleston Gray)cuwcgB103
Csa2G072460Watermelon (97103) v1cuwmB163
Csa2G072460Cucurbita pepo (Zucchini)cpecuB098
Csa2G072460Cucurbita pepo (Zucchini)cpecuB811
Csa2G072460Bottle gourd (USVL1VR-Ls)culsiB098
Csa2G072460Silver-seed gourdcarcuB0005
Csa2G072460Silver-seed gourdcarcuB0184
Csa2G072460Watermelon (97103) v2cuwmbB109