CU100383 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU100383
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Ankyrin repeat family protein
Location	Chr2 : 5597058 .. 5598057 (-)
Sequence length	573

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ATACTTGGGAAATGGGTAGAGGATCACATCCATTCCTTAGATGCAGATGGTATTCGAGCTCTAATTAATGTTCTTGACCTGGAAAATCCAGATTTATGGAAGTGGTTAACAGGCCAAGAGCAACCCCCTGAAGCTTTGAAAACAAATCCTGTATTTACTGGAGTGAAAGAGAAGGTGATAGACAATCTCAACAAACATGCCTCACCTGAGACAAGAACACCACCTGGCCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAAAGGTCGAGATGGCCCCATAACAGGAAATCAGTAGCTCTTCCCTTTAACTTTATGCCTAATCTCTCTTTTAAGTATATAAGAACAGAAAAGCCCTGCTAAGGTTTCTATATAAATGGTAGATTGGGAATAAGTTAAACCAACAAAGACTTTGAAGGGAACATTATTTAGTGTCTCTCCCTTTAAACCCTTGATCTATTGTATATTAATAATTTTTTTCCTTGTATGCATTTAACGGTAACTACATTGTACCGATCTTGAACACTTTGTTGTTTTGATGTGCTTACCAATATAGATTGTATTTACTTTAACC

Library


Library category	ESTs
fruit (8DPP) library	5
gynoecious flower library	3
hermaphrodite flower library	2

Homology

[Close]

BLAST of CU100383 vs. Swiss-Prot
Match: SDAF2_ARATH (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Arabidopsis thaliana GN=SDHAF2 PE=1 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.1e-37
Identity = 66/98 (67.35%), Postives = 84/98 (85.71%), Query Frame = 1


Query: 1   ILGKWVEDHIHSLDADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVI 60
           +LG WVE++++S+D +G+++LI+VL+LENPDLWKWLT QEQPPEA+ +NPVF+ + EKV+
Sbjct: 91  VLGNWVEENVNSMDENGVKSLIHVLNLENPDLWKWLTEQEQPPEAVSSNPVFSALHEKVM 150

Query: 61  DNLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ 120
            NLNKHA+PETR   GQ WVRGWDDFK+GRD PI+GNQ
Sbjct: 151 KNLNKHAAPETRAAAGQPWVRGWDDFKRGRDAPISGNQ 188

Query: 121  180
           
Sbjct: 211  188

Query: 181  240
           
Sbjct: 271  188

Query: 241  295
           
Sbjct: 331  188

[Close]

BLAST of CU100383 vs. TrEMBL
Match: A0A0A0LKF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072460 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.4e-52
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1


Query: 1   ILGKWVEDHIHSLDADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVI 60
           ILGKWVEDHIHSLDADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVI
Sbjct: 168 ILGKWVEDHIHSLDADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVI 227

Query: 61  DNLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ 120
           DNLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ
Sbjct: 228 DNLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ 265

Query: 121  180
           
Sbjct: 288  265

Query: 181  240
           
Sbjct: 348  265

Query: 241  295
           
Sbjct: 408  265

[Close]

BLAST of CU100383 vs. TrEMBL
Match: A0A068TQT2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022341001 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.8e-40
Identity = 74/98 (75.51%), Postives = 87/98 (88.78%), Query Frame = 1


Query: 1   ILGKWVEDHIHSLDADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVI 60
           ILG+WVEDHIHS+D +GI+AL++VLDLENPDLWKWLTGQ QPPEA++ NPVF  V+++V+
Sbjct: 84  ILGRWVEDHIHSMDENGIKALVHVLDLENPDLWKWLTGQGQPPEAVRMNPVFADVQKRVV 143

Query: 61  DNLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ 120
           +NLN HASPETR  PGQ WVRGWDDFKKGRDGP  GNQ
Sbjct: 144 NNLNSHASPETRATPGQPWVRGWDDFKKGRDGPAVGNQ 181

Query: 121  180
           
Sbjct: 204  181

Query: 181  240
           
Sbjct: 264  181

Query: 241  295
           
Sbjct: 324  181

[Close]

BLAST of CU100383 vs. TrEMBL
Match: V4TAF7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032866mg PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.6e-40
Identity = 73/98 (74.49%), Postives = 90/98 (91.84%), Query Frame = 1


Query: 1   ILGKWVEDHIHSLDADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVI 60
           +LGKWVE+HIHS+D +GI+AL++VL+LENPDLWKWLTGQEQPPEA+KTNPVF+ +  KV+
Sbjct: 85  VLGKWVEEHIHSMDKNGIKALVDVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVM 144

Query: 61  DNLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ 120
           +NLN +ASPETR+ PGQ WVRGWDDFKKGRD P++GNQ
Sbjct: 145 NNLNSYASPETRSEPGQPWVRGWDDFKKGRDSPLSGNQ 182

Query: 121  180
           
Sbjct: 205  182

Query: 181  240
           
Sbjct: 265  182

Query: 241  295
           
Sbjct: 325  182

[Close]

BLAST of CU100383 vs. TrEMBL
Match: A0A067F365_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039261mg PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.6e-40
Identity = 73/98 (74.49%), Postives = 90/98 (91.84%), Query Frame = 1


Query: 1   ILGKWVEDHIHSLDADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVI 60
           +LGKWVE+HIHS+D +GI+AL++VL+LENPDLWKWLTGQEQPPEA+KTNPVF+ +  KV+
Sbjct: 85  VLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVM 144

Query: 61  DNLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ 120
           +NLN +ASPETR+ PGQ WVRGWDDFKKGRD P++GNQ
Sbjct: 145 NNLNSYASPETRSEPGQPWVRGWDDFKKGRDSPLSGNQ 182

Query: 121  180
           
Sbjct: 205  182

Query: 181  240
           
Sbjct: 265  182

Query: 241  295
           
Sbjct: 325  182

[Close]

BLAST of CU100383 vs. TrEMBL
Match: A0A0B0NMK4_GOSAR (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Gossypium arboreum GN=F383_21595 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 6.2e-40
Identity = 73/98 (74.49%), Postives = 86/98 (87.76%), Query Frame = 1


Query: 1   ILGKWVEDHIHSLDADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVI 60
           +LGKWVE+HIHS+D +GI+AL+ VLDLENPDLWKWLTGQEQPPEA+  NPVF+ V+++V+
Sbjct: 101 VLGKWVEEHIHSMDENGIKALVKVLDLENPDLWKWLTGQEQPPEAVTVNPVFSAVQQRVL 160

Query: 61  DNLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ 120
            NLN H+SPETR  PGQ WVRGWDD KKGRD PITGNQ
Sbjct: 161 KNLNNHSSPETRATPGQPWVRGWDDIKKGRDSPITGNQ 198

Query: 121  180
           
Sbjct: 221  198

Query: 181  240
           
Sbjct: 281  198

Query: 241  295
           
Sbjct: 341  198

[Close]

BLAST of CU100383 vs. NCBI nr
Match: gi|449470271|ref|XP_004152841.1| (PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Cucumis sativus])

HSP 1 Score: 216.9 bits (551), Expect = 3.2e-53
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1


Query: 1   ILGKWVEDHIHSLDADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVI 60
           ILGKWVEDHIHSLDADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVI
Sbjct: 101 ILGKWVEDHIHSLDADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVI 160

Query: 61  DNLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ 120
           DNLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ
Sbjct: 161 DNLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ 198

Query: 121  180
           
Sbjct: 221  198

Query: 181  240
           
Sbjct: 281  198

Query: 241  295
           
Sbjct: 341  198

[Close]

BLAST of CU100383 vs. NCBI nr
Match: gi|700206113|gb|KGN61232.1| (hypothetical protein Csa_2G072460 [Cucumis sativus])

HSP 1 Score: 216.9 bits (551), Expect = 3.2e-53
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1


Query: 1   ILGKWVEDHIHSLDADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVI 60
           ILGKWVEDHIHSLDADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVI
Sbjct: 168 ILGKWVEDHIHSLDADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVI 227

Query: 61  DNLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ 120
           DNLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ
Sbjct: 228 DNLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ 265

Query: 121  180
           
Sbjct: 288  265

Query: 181  240
           
Sbjct: 348  265

Query: 241  295
           
Sbjct: 408  265

[Close]

BLAST of CU100383 vs. NCBI nr
Match: gi|659082578|ref|XP_008441916.1| (PREDICTED: uncharacterized protein LOC103485912 [Cucumis melo])

HSP 1 Score: 211.5 bits (537), Expect = 1.3e-51
Identity = 95/98 (96.94%), Postives = 97/98 (98.98%), Query Frame = 1


Query: 1   ILGKWVEDHIHSLDADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVI 60
           ILGKWVEDHIHSLDADGIR LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKV+
Sbjct: 103 ILGKWVEDHIHSLDADGIRDLINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVM 162

Query: 61  DNLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ 120
           +NLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ
Sbjct: 163 NNLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ 200

Query: 121  180
           
Sbjct: 223  200

Query: 181  240
           
Sbjct: 283  200

Query: 241  295
           
Sbjct: 343  200

[Close]

BLAST of CU100383 vs. NCBI nr
Match: gi|661898327|emb|CDO98294.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 176.0 bits (445), Expect = 6.2e-41
Identity = 74/98 (75.51%), Postives = 87/98 (88.78%), Query Frame = 1


Query: 1   ILGKWVEDHIHSLDADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVI 60
           ILG+WVEDHIHS+D +GI+AL++VLDLENPDLWKWLTGQ QPPEA++ NPVF  V+++V+
Sbjct: 84  ILGRWVEDHIHSMDENGIKALVHVLDLENPDLWKWLTGQGQPPEAVRMNPVFADVQKRVV 143

Query: 61  DNLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ 120
           +NLN HASPETR  PGQ WVRGWDDFKKGRDGP  GNQ
Sbjct: 144 NNLNSHASPETRATPGQPWVRGWDDFKKGRDGPAVGNQ 181

Query: 121  180
           
Sbjct: 204  181

Query: 181  240
           
Sbjct: 264  181

Query: 241  295
           
Sbjct: 324  181

[Close]

BLAST of CU100383 vs. NCBI nr
Match: gi|641838702|gb|KDO57641.1| (hypothetical protein CISIN_1g039261mg [Citrus sinensis])

HSP 1 Score: 175.6 bits (444), Expect = 8.1e-41
Identity = 73/98 (74.49%), Postives = 90/98 (91.84%), Query Frame = 1


Query: 1   ILGKWVEDHIHSLDADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVI 60
           +LGKWVE+HIHS+D +GI+AL++VL+LENPDLWKWLTGQEQPPEA+KTNPVF+ +  KV+
Sbjct: 85  VLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVM 144

Query: 61  DNLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ 120
           +NLN +ASPETR+ PGQ WVRGWDDFKKGRD P++GNQ
Sbjct: 145 NNLNSYASPETRSEPGQPWVRGWDDFKKGRDSPLSGNQ 182

Query: 121  180
           
Sbjct: 205  182

Query: 181  240
           
Sbjct: 265  182

Query: 241  295
           
Sbjct: 325  182

The following BLAST results are available for this feature:

BLAST of CU100383 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SDAF2_ARATH	1.1e-37	67.35	Succinate dehydrogenase assembly factor 2, mitochondrial OS=Arabidopsis thaliana...	[more]

BLAST of CU100383 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKF9_CUCSA	1.4e-52	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072460 PE=4 SV=1	[more]
A0A068TQT2_COFCA	2.8e-40	75.51	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022341001 PE=4 SV=1	[more]
V4TAF7_9ROSI	3.6e-40	74.49	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032866mg PE=4 SV=1	[more]
A0A067F365_CITSI	3.6e-40	74.49	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039261mg PE=4 SV=1	[more]
A0A0B0NMK4_GOSAR	6.2e-40	74.49	Succinate dehydrogenase assembly factor 2, mitochondrial OS=Gossypium arboreum G...	[more]

BLAST of CU100383 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449470271\|ref\|XP_004152841.1\|	3.2e-53	100.00	PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Cucumis sat...	[more]
gi\|700206113\|gb\|KGN61232.1\|	3.2e-53	100.00	hypothetical protein Csa_2G072460 [Cucumis sativus]	[more]
gi\|659082578\|ref\|XP_008441916.1\|	1.3e-51	96.94	PREDICTED: uncharacterized protein LOC103485912 [Cucumis melo]	[more]
gi\|661898327\|emb\|CDO98294.1\|	6.2e-41	75.51	unnamed protein product [Coffea canephora]	[more]
gi\|641838702\|gb\|KDO57641.1\|	8.1e-41	74.49	hypothetical protein CISIN_1g039261mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR005631	SDH

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa2G072460	Csa2G072460	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02KPI2A	FKNP3UI02KPI2A	EST
FKNP3UI02MLYXV	FKNP3UI02MLYXV	EST
FKNP3UI02NDJW3	FKNP3UI02NDJW3	EST
FKNP3UI02O6AQ6	FKNP3UI02O6AQ6	EST
FKNP3UI02OG92W	FKNP3UI02OG92W	EST
G0108265	G0108265	EST
G0164334	G0164334	EST
G0178931	G0178931	EST
H0059658	H0059658	EST
H0158748	H0158748	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005631	Flavinator of succinate dehydrogenase	GENE3D	G3DSA:1.10.150.250		coord: 1..63 score: 9.1
IPR005631	Flavinator of succinate dehydrogenase	PFAM	PF03937	Sdh5	coord: 1..52 score: 1.6
IPR005631	Flavinator of succinate dehydrogenase	unknown	SSF109910	YgfY-like	coord: 1..49 score: 3.9
None	No IPR available	PANTHER	PTHR12469	PROTEIN EMI5 HOMOLOG, MITOCHONDRIAL	coord: 1..79 score: 1.8