Cucsa.177520 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.177520
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	At2g31940/F20M17.2
Location	scaffold01225 : 1503693 .. 1504299 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCATTTTTCTGTATCCAATTTCACTCCCATCTTTTTCATCCATCGACTGATCAACGTTTCATCTCGCATTTTTTCATCCTCAATCCTTCACTATGACGCCGATTTTCGATACCGACGCCGGCGAGATGTTCGTCAGAATCGCCATGTTCGTCTTTATTCAGCTTCTTGTCTATTTGATTCTCTCCAAATCCTCCAATCTCTTCTCCAAAGACCAGAAAGTGAGATCTCTCAGCTTTAAACCGGCTCGTTCCGTCAGTATTCGCCGGTTTCTGGCCGCTCTTTCTGACCTTCCTCCCGGTGGTGAGCTTTCTCCGTCGACAAAAGTTTCCACTCCATCGTCGGCTCGTCGCGATCGTTCCGATGATGGTGGCAGGTTGTAAGGAGACGAATGGATGGGATCGAATTGAATTGGTTCCGATTGACCTGTTCTGGGTTTAGTCTTAGTCATGTAAAGTGAGAAAAGAGTAGGGGTGATTTGATTTTATGTTATTTGTTAAAGTTAGAAGGGTTGGTTTTGTGAATTTTGATTATTTGTATTTGTTATTTGAATGATTCTTTTGTTCTTTGGTAATGGTAATGGAAATTATTTGATCAATTGATCCATTT

mRNA sequence

CTCATTTTTCTGTATCCAATTTCACTCCCATCTTTTTCATCCATCGACTGATCAACGTTTCATCTCGCATTTTTTCATCCTCAATCCTTCACTATGACGCCGATTTTCGATACCGACGCCGGCGAGATGTTCGTCAGAATCGCCATGTTCGTCTTTATTCAGCTTCTTGTCTATTTGATTCTCTCCAAATCCTCCAATCTCTTCTCCAAAGACCAGAAAGTGAGATCTCTCAGCTTTAAACCGGCTCGTTCCGTCAGTATTCGCCGGTTTCTGGCCGCTCTTTCTGACCTTCCTCCCGGTGGTGAGCTTTCTCCGTCGACAAAAGTTTCCACTCCATCGTCGGCTCGTCGCGATCGTTCCGATGATGGTGGCAGGTTGTAAGGAGACGAATGGATGGGATCGAATTGAATTGGTTCCGATTGACCTGTTCTGGGTTTAGTCTTAGTCATGTAAAGTGAGAAAAGAGTAGGGGTGATTTGATTTTATGTTATTTGTTAAAGTTAGAAGGGTTGGTTTTGTGAATTTTGATTATTTGTATTTGTTATTTGAATGATTCTTTTGTTCTTTGGTAATGGTAATGGAAATTATTTGATCAATTGATCCATTT

Coding sequence (CDS)

ATGACGCCGATTTTCGATACCGACGCCGGCGAGATGTTCGTCAGAATCGCCATGTTCGTCTTTATTCAGCTTCTTGTCTATTTGATTCTCTCCAAATCCTCCAATCTCTTCTCCAAAGACCAGAAAGTGAGATCTCTCAGCTTTAAACCGGCTCGTTCCGTCAGTATTCGCCGGTTTCTGGCCGCTCTTTCTGACCTTCCTCCCGGTGGTGAGCTTTCTCCGTCGACAAAAGTTTCCACTCCATCGTCGGCTCGTCGCGATCGTTCCGATGATGGTGGCAGGTTGTAA

Protein sequence

MTPIFDTDAGEMFVRIAMFVFIQLLVYLILSKSSNLFSKDQKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARRDRSDDGGRL*

Homology

[Close]

BLAST of Cucsa.177520 vs. TrEMBL
Match: A0A0A0LD48_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G706170 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.0e-19
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 1


Query: 42  KVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARRDRSDDGGRL 96
           KVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSAR DRSDDGGRL
Sbjct: 72  KVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARLDRSDDGGRL 125

[Close]

BLAST of Cucsa.177520 vs. TrEMBL
Match: U7DUH6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0650s00210g PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-17
Identity = 51/89 (57.30%), Postives = 66/89 (74.16%), Query Frame = 1


Query: 4  IFDTDAGEMFVRIAMFVFIQLLVYLILSKSSNLFSKDQKVRSLSFKPARSVSIRRFLAAL 63
          + ++  G++ +++AMFV +Q LVYLILSKSSN+FSK    RS SFK ARSVSIRR LA L
Sbjct: 2  MMESSLGDVLLKVAMFVIVQGLVYLILSKSSNIFSKTNDKRSSSFKTARSVSIRRILAVL 61

Query: 64 SDLPPGGELSPSTKVSTP-SSARRDRSDD 92
           DLPPGGELSP++  ST   S   ++S+D
Sbjct: 62 QDLPPGGELSPASSKSTQVQSPTVEKSED 90

[Close]

BLAST of Cucsa.177520 vs. TrEMBL
Match: U5G004_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s02920g PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.8e-17
Identity = 48/77 (62.34%), Postives = 60/77 (77.92%), Query Frame = 1


Query: 4  IFDTDAGEMFVRIAMFVFIQLLVYLILSKSSNLFSKDQKVRSLSFKPARSVSIRRFLAAL 63
          + ++  G++ +++AMFV +Q LVYLILSKSSN+FSK    RS SFK ARSVSIRR LA L
Sbjct: 2  MMESSLGDVLLKVAMFVIVQGLVYLILSKSSNIFSKTNDKRSSSFKTARSVSIRRILAVL 61

Query: 64 SDLPPGGELSPSTKVST 81
           DLPPGGELSP++  ST
Sbjct: 62 QDLPPGGELSPASSKST 78

[Close]

BLAST of Cucsa.177520 vs. TrEMBL
Match: F6HPS7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0156g00150 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.3e-17
Identity = 49/77 (63.64%), Postives = 59/77 (76.62%), Query Frame = 1


Query: 5  FDTDAGEMFVRIAMFVFIQLLVYLILSKSSNLFSKDQKVRSLSFKPARSVSIRRFLAALS 64
          F++   +M +++ MFV +Q LVYLILSKSSN+FSK+ K RS  FKPARSVSIRR LA L+
Sbjct: 3  FESSLADMVLKVGMFVLVQALVYLILSKSSNIFSKNPK-RSHRFKPARSVSIRRVLACLA 62

Query: 65 DLPPGGELSPSTKVSTP 82
          DLPPGGELSPS     P
Sbjct: 63 DLPPGGELSPSPSPKGP 78

[Close]

BLAST of Cucsa.177520 vs. TrEMBL
Match: B9REM2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1775700 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 8.3e-17
Identity = 49/74 (66.22%), Postives = 58/74 (78.38%), Query Frame = 1


Query: 4  IFDTDAGEMFVRIAMFVFIQLLVYLILSKSSNLFSKDQKVRSLSFKPARSVSIRRFLAAL 63
          I ++  G+M +++AMF  +Q LVY+ILSKSSN+FS   K RS SFKPARSVSIRRFLAAL
Sbjct: 3  IMESSLGDMLLKVAMFALVQALVYIILSKSSNIFSNTVK-RSSSFKPARSVSIRRFLAAL 62

Query: 64 SDLPPGGELSPSTK 78
           DLP  GELSPS K
Sbjct: 63 QDLPASGELSPSPK 75

[Close]

BLAST of Cucsa.177520 vs. TAIR10
Match: AT2G31945.1 (AT2G31945.1 unknown protein)

HSP 1 Score: 77.4 bits (189), Expect = 5.3e-15
Identity = 40/79 (50.63%), Postives = 56/79 (70.89%), Query Frame = 1


Query: 6  DTDAGEMFVRIAMFVFIQLLVYLILSKSSNLFSKDQKV-RSLSFKPARSVSIRRFLAALS 65
          D   G M +++A+F  +Q LVYLIL KSS +F++   + R+ SF+P RSVSIRR LAAL 
Sbjct: 2  DGGLGTMLMKVALFALVQGLVYLILLKSSRVFARSNSLKRAYSFRPMRSVSIRRILAALQ 61

Query: 66 DLPPGGELSPSTKVSTPSS 84
          D+P G ++SPS+  S+ SS
Sbjct: 62 DIPAGDDMSPSSNGSSSSS 80

[Close]

BLAST of Cucsa.177520 vs. TAIR10
Match: AT1G05575.1 (AT1G05575.1 unknown protein)

HSP 1 Score: 73.2 bits (178), Expect = 1.0e-13
Identity = 37/65 (56.92%), Postives = 51/65 (78.46%), Query Frame = 1


Query: 12 MFVRIAMFVFIQLLVYLILSKSSNLFSKDQKV-RSLSFKPARSVSIRRFLAALSDLPPGG 71
          M +++++F  IQ LVYLILSKSS++FS  + + R+ SF+ ARS+SIRR LA L D+P GG
Sbjct: 8  MLMKVSIFALIQGLVYLILSKSSSVFSTSKTMKRAYSFRSARSISIRRILAVLQDMPAGG 67

Query: 72 ELSPS 76
          E+SPS
Sbjct: 68 EMSPS 72

[Close]

BLAST of Cucsa.177520 vs. NCBI nr
Match: gi|778682889|ref|XP_011651805.1| (PREDICTED: uncharacterized protein LOC105434941 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-42
Identity = 93/95 (97.89%), Postives = 93/95 (97.89%), Query Frame = 1


Query: 1  MTPIFDTDAGEMFVRIAMFVFIQLLVYLILSKSSNLFSKDQKVRSLSFKPARSVSIRRFL 60
          MTPIFDTDAGEMFVRIAMFVFIQLLVYLILSKSSNLFS DQKVRSLSFKPARSVSIRRFL
Sbjct: 1  MTPIFDTDAGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSTKVSTPSSARRDRSDDGGRL 96
          AALSDLPPGGELSPSTKVSTPSSAR DRSDDGGRL
Sbjct: 61 AALSDLPPGGELSPSTKVSTPSSARLDRSDDGGRL 95

[Close]

BLAST of Cucsa.177520 vs. NCBI nr
Match: gi|659123611|ref|XP_008461750.1| (PREDICTED: uncharacterized protein LOC103500281 [Cucumis melo])

HSP 1 Score: 147.1 bits (370), Expect = 1.5e-32
Identity = 79/95 (83.16%), Postives = 83/95 (87.37%), Query Frame = 1


Query: 1  MTPIFDTDAGEMFVRIAMFVFIQLLVYLILSKSSNLFSKDQKVRSLSFKPARSVSIRRFL 60
          MTPI +TDAGEMFVRIAMFVF+QLLVYLILSKSSNLFS DQK+RSLSFKPARSVSIRRFL
Sbjct: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSTKVSTPSSARRDRSDDGGRL 96
          AALSDLPPGGELS       PSS RR RSDDG +L
Sbjct: 61 AALSDLPPGGELS-------PSSVRRGRSDDGCKL 88

[Close]

BLAST of Cucsa.177520 vs. NCBI nr
Match: gi|700203499|gb|KGN58632.1| (hypothetical protein Csa_3G706170 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-19
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 1


Query: 42  KVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARRDRSDDGGRL 96
           KVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSAR DRSDDGGRL
Sbjct: 72  KVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARLDRSDDGGRL 125

[Close]

BLAST of Cucsa.177520 vs. NCBI nr
Match: gi|672110920|ref|XP_008797977.1| (PREDICTED: uncharacterized protein LOC103713005 [Phoenix dactylifera])

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-17
Identity = 52/80 (65.00%), Postives = 63/80 (78.75%), Query Frame = 1


Query: 11 EMFVRIAMFVFIQLLVYLILSKSSNLFSKDQKVRSLSFKPARSVSIRRFLAALSDLPPGG 70
          ++ +++AMFV IQ LVYLILSKSSN+FS   K+RSLSF+  RSVSIRR LAALSDLPPGG
Sbjct: 13 DLLLKVAMFVLIQALVYLILSKSSNIFSTT-KMRSLSFRTVRSVSIRRMLAALSDLPPGG 72

Query: 71 ELSPSTKVSTPSSARRDRSD 91
          E SPS+ +S  S+   DR D
Sbjct: 73 EPSPSSSLSPASNRSSDRED 91

[Close]

BLAST of Cucsa.177520 vs. NCBI nr
Match: gi|566255179|ref|XP_006387711.1| (hypothetical protein POPTR_0650s00210g [Populus trichocarpa])

HSP 1 Score: 96.7 bits (239), Expect = 2.4e-17
Identity = 51/89 (57.30%), Postives = 66/89 (74.16%), Query Frame = 1


Query: 4  IFDTDAGEMFVRIAMFVFIQLLVYLILSKSSNLFSKDQKVRSLSFKPARSVSIRRFLAAL 63
          + ++  G++ +++AMFV +Q LVYLILSKSSN+FSK    RS SFK ARSVSIRR LA L
Sbjct: 2  MMESSLGDVLLKVAMFVIVQGLVYLILSKSSNIFSKTNDKRSSSFKTARSVSIRRILAVL 61

Query: 64 SDLPPGGELSPSTKVSTP-SSARRDRSDD 92
           DLPPGGELSP++  ST   S   ++S+D
Sbjct: 62 QDLPPGGELSPASSKSTQVQSPTVEKSED 90

The following BLAST results are available for this feature:

BLAST of Cucsa.177520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LD48_CUCSA	1.0e-19	98.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G706170 PE=4 SV=1	[more]
U7DUH6_POPTR	1.7e-17	57.30	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0650s00210g PE=4 SV=1	[more]
U5G004_POPTR	2.8e-17	62.34	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s02920g PE=4 SV=1	[more]
F6HPS7_VITVI	6.3e-17	63.64	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0156g00150 PE=4 SV=...	[more]
B9REM2_RICCO	8.3e-17	66.22	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1775700 PE=4 SV=1	[more]

BLAST of Cucsa.177520 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31945.1	5.3e-15	50.63	unknown protein	[more]
AT1G05575.1	1.0e-13	56.92	unknown protein	[more]

BLAST of Cucsa.177520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778682889\|ref\|XP_011651805.1\|	2.8e-42	97.89	PREDICTED: uncharacterized protein LOC105434941 [Cucumis sativus]	[more]
gi\|659123611\|ref\|XP_008461750.1\|	1.5e-32	83.16	PREDICTED: uncharacterized protein LOC103500281 [Cucumis melo]	[more]
gi\|700203499\|gb\|KGN58632.1\|	1.5e-19	98.15	hypothetical protein Csa_3G706170 [Cucumis sativus]	[more]
gi\|672110920\|ref\|XP_008797977.1\|	1.1e-17	65.00	PREDICTED: uncharacterized protein LOC103713005 [Phoenix dactylifera]	[more]
gi\|566255179\|ref\|XP_006387711.1\|	2.4e-17	57.30	hypothetical protein POPTR_0650s00210g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.177520.1	Cucsa.177520.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34268	FAMILY NOT NAMED	coord: 1..95 score: 1.4
None	No IPR available	PANTHER	PTHR34268:SF2	SUBFAMILY NOT NAMED	coord: 1..95 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.177520	Cla017234	Watermelon (97103) v1	cgywmB334
Cucsa.177520	Csa3G706170	Cucumber (Chinese Long) v2	cgycuB268
Cucsa.177520	ClCG10G012700	Watermelon (Charleston Gray)	cgywcgB312
Cucsa.177520	CSPI03G30060	Wild cucumber (PI 183967)	cgycpiB278
Cucsa.177520	CmaCh14G010350	Cucurbita maxima (Rimu)	cgycmaB0497
Cucsa.177520	CmaCh01G002060	Cucurbita maxima (Rimu)	cgycmaB0499
Cucsa.177520	CmoCh14G010520	Cucurbita moschata (Rifu)	cgycmoB0499
Cucsa.177520	Cp4.1LG02g15510	Cucurbita pepo (Zucchini)	cgycpeB0487
Cucsa.177520	Cla97C10G195580	Watermelon (97103) v2	cgywmbB317
Cucsa.177520	Bhi11G001223	Wax gourd	cgywgoB360
Cucsa.177520	Carg07303	Silver-seed gourd	carcgyB0858
Cucsa.177520	Carg11249	Silver-seed gourd	carcgyB0928

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.177520	Cucurbita pepo (Zucchini)	cgycpeB0489
Cucsa.177520	Bottle gourd (USVL1VR-Ls)	cgylsiB297
Cucsa.177520	Melon (DHL92) v3.6.1	cgymedB311
Cucsa.177520	Melon (DHL92) v3.6.1	cgymedB312
Cucsa.177520	Cucumber (Chinese Long) v3	cgycucB281
Cucsa.177520	Cucurbita moschata (Rifu)	cgycmoB0501
Cucsa.177520	Melon (DHL92) v3.5.1	cgymeB316
Cucsa.177520	Melon (DHL92) v3.5.1	cgymeB317