Carg07303 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07303
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Velvet complex subunit B like
Location	Cucurbita_argyrosperma_scaffold_019 : 29896 .. 30183 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCCTATTTTGGAAATTGACGCCGGCGAGTTCTTCGTCAAAATCGCTATGTTCCTCTTAGTTCAACTTCTTGTTTATTTTATCCTCTCCGAATCCTCTGATCTCTTCTCTAAGGACCAGAAATTGAAATCTCTCAGCTTCAAACCGGCGAGATCCGTCAGTATTCGCCGGTTTTTAGCAGCTCTTTCCGACATGCCTTCCGGTGGCGAGCTGTCACCGTCGTCGAGAGTTCGGACTCCGTCGCCTATTCACCGGGAGCATTCCGATGACGGCGGCAGGTTTTAG

mRNA sequence

ATGATGCCTATTTTGGAAATTGACGCCGGCGAGTTCTTCGTCAAAATCGCTATGTTCCTCTTAGTTCAACTTCTTGTTTATTTTATCCTCTCCGAATCCTCTGATCTCTTCTCTAAGGACCAGAAATTGAAATCTCTCAGCTTCAAACCGGCGAGATCCGTCAGTATTCGCCGGTTTTTAGCAGCTCTTTCCGACATGCCTTCCGGTGGCGAGCTGTCACCGTCGTCGAGAGTTCGGACTCCGTCGCCTATTCACCGGGAGCATTCCGATGACGGCGGCAGGTTTTAG

Coding sequence (CDS)

ATGATGCCTATTTTGGAAATTGACGCCGGCGAGTTCTTCGTCAAAATCGCTATGTTCCTCTTAGTTCAACTTCTTGTTTATTTTATCCTCTCCGAATCCTCTGATCTCTTCTCTAAGGACCAGAAATTGAAATCTCTCAGCTTCAAACCGGCGAGATCCGTCAGTATTCGCCGGTTTTTAGCAGCTCTTTCCGACATGCCTTCCGGTGGCGAGCTGTCACCGTCGTCGAGAGTTCGGACTCCGTCGCCTATTCACCGGGAGCATTCCGATGACGGCGGCAGGTTTTAG

Protein sequence

MMPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRFLAALSDMPSGGELSPSSRVRTPSPIHREHSDDGGRF

Homology

[Close]

BLAST of Carg07303 vs. NCBI nr
Match: XP_011651805.1 (PREDICTED: uncharacterized protein LOC105434941 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 2.2e-27
Identity = 68/94 (72.34%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 1  MMPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRFL 60
          M PI + DAGE FV+IAMF+ +QLLVY ILS+SS+LFS DQK++SLSFKPARSVSIRRFL
Sbjct: 1  MTPIFDTDAGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFL 60

Query: 61 AALSDMPSGGELSPSSRVRTPSPIHREHSDDGGR 95
          AALSD+P GGELSPS++V TPS    + SDDGGR
Sbjct: 61 AALSDLPPGGELSPSTKVSTPSSARLDRSDDGGR 94

[Close]

BLAST of Carg07303 vs. NCBI nr
Match: XP_008461750.1 (PREDICTED: uncharacterized protein LOC103500281 [Cucumis melo])

HSP 1 Score: 118.2 bits (295), Expect = 1.5e-23
Identity = 67/92 (72.83%), Postives = 74/92 (80.43%), Query Frame = 0


Query: 1  MMPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRFL 60
          M PI E DAGE FV+IAMF+ VQLLVY ILS+SS+LFS DQKL+SLSFKPARSVSIRRFL
Sbjct: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 61 AALSDMPSGGELSPSSRVRTPSPIHREHSDDG 93
          AALSD+P GGELSPSS       + R  SDDG
Sbjct: 61 AALSDLPPGGELSPSS-------VRRGRSDDG 85

[Close]

BLAST of Carg07303 vs. NCBI nr
Match: OWM73423.1 (hypothetical protein CDL15_Pgr026522 [Punica granatum] >PKI43140.1 hypothetical protein CRG98_036446 [Punica granatum])

HSP 1 Score: 94.0 bits (232), Expect = 3.0e-16
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 10 GEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRFLAALSDMPSG 69
          G+  +K+ MF+LVQ LVY ILS+SSD+FSKD+  KSLSF+P RSVSIRRF+AALSDMP+G
Sbjct: 10 GDVLLKVGMFVLVQALVYLILSKSSDVFSKDKAKKSLSFRPVRSVSIRRFMAALSDMPAG 69

Query: 70 GELSPSSRVRTPSPIHREHSD 91
          GE SPS   R+P  +   H D
Sbjct: 70 GEPSPSP--RSPPSLTTTHED 88

[Close]

BLAST of Carg07303 vs. NCBI nr
Match: XP_015901100.1 (uncharacterized protein LOC107434156 [Ziziphus jujuba])

HSP 1 Score: 89.0 bits (219), Expect = 9.6e-15
Identity = 49/80 (61.25%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 4  ILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRFLAAL 63
          +LE    +  +K+ +F LVQ LVY ILS+SS +FSK  K +S SFKPARSVS+RRFLAAL
Sbjct: 2  VLESGFSDMLIKVGLFFLVQALVYLILSKSSSIFSKSTK-RSHSFKPARSVSVRRFLAAL 61

Query: 64 SDMPSGGELSPSSRVRTPSP 84
          SDMP+GGELSPS +    SP
Sbjct: 62 SDMPAGGELSPSPKEHLQSP 80

[Close]

BLAST of Carg07303 vs. NCBI nr
Match: KZM81978.1 (hypothetical protein DCAR_029591 [Daucus carota subsp. sativus])

HSP 1 Score: 89.0 bits (219), Expect = 9.6e-15
Identity = 51/84 (60.71%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 4  ILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRFLAAL 63
          + E D G+  VKIA+FLLVQ LVY ILS SS+LFS        +F+PARSVSIRRFLAAL
Sbjct: 4  LTEYDLGDMLVKIALFLLVQALVYCILSNSSNLFSNSPPRSPGNFRPARSVSIRRFLAAL 63

Query: 64 SDMPSGGELSPSS--RVRTPSPIH 86
          SDMP+GGELSP++       SP+H
Sbjct: 64 SDMPAGGELSPTTPKNQEQSSPVH 87

[Close]

BLAST of Carg07303 vs. TAIR10
Match: AT1G05575.1 (unknown protein)

HSP 1 Score: 67.4 bits (163), Expect = 5.4e-12
Identity = 36/64 (56.25%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 14 VKIAMFLLVQLLVYFILSESSDLFSKDQKLK-SLSFKPARSVSIRRFLAALSDMPSGGEL 73
          +K+++F L+Q LVY ILS+SS +FS  + +K + SF+ ARS+SIRR LA L DMP+GGE+
Sbjct: 10 MKVSIFALIQGLVYLILSKSSSVFSTSKTMKRAYSFRSARSISIRRILAVLQDMPAGGEM 69

Query: 74 SPSS 77
          SPS+
Sbjct: 70 SPSA 73

[Close]

BLAST of Carg07303 vs. TAIR10
Match: AT2G31945.1 (unknown protein)

HSP 1 Score: 61.2 bits (147), Expect = 3.9e-10
Identity = 34/64 (53.12%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 10 GEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLK-SLSFKPARSVSIRRFLAALSDMPS 69
          G   +K+A+F LVQ LVY IL +SS +F++   LK + SF+P RSVSIRR LAAL D+P+
Sbjct: 6  GTMLMKVALFALVQGLVYLILLKSSRVFARSNSLKRAYSFRPMRSVSIRRILAALQDIPA 65

Query: 70 GGEL 73
          G ++
Sbjct: 66 GDDM 69

[Close]

BLAST of Carg07303 vs. TrEMBL
Match: tr|A0A1S3CFW1|A0A1S3CFW1_CUCME (uncharacterized protein LOC103500281 OS=Cucumis melo OX=3656 GN=LOC103500281 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 9.8e-24
Identity = 67/92 (72.83%), Postives = 74/92 (80.43%), Query Frame = 0


Query: 1  MMPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRFL 60
          M PI E DAGE FV+IAMF+ VQLLVY ILS+SS+LFS DQKL+SLSFKPARSVSIRRFL
Sbjct: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 61 AALSDMPSGGELSPSSRVRTPSPIHREHSDDG 93
          AALSD+P GGELSPSS       + R  SDDG
Sbjct: 61 AALSDLPPGGELSPSS-------VRRGRSDDG 85

[Close]

BLAST of Carg07303 vs. TrEMBL
Match: tr|A0A218WLF6|A0A218WLF6_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr026522 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-16
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 10 GEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRFLAALSDMPSG 69
          G+  +K+ MF+LVQ LVY ILS+SSD+FSKD+  KSLSF+P RSVSIRRF+AALSDMP+G
Sbjct: 10 GDVLLKVGMFVLVQALVYLILSKSSDVFSKDKAKKSLSFRPVRSVSIRRFMAALSDMPAG 69

Query: 70 GELSPSSRVRTPSPIHREHSD 91
          GE SPS   R+P  +   H D
Sbjct: 70 GEPSPSP--RSPPSLTTTHED 88

[Close]

BLAST of Carg07303 vs. TrEMBL
Match: tr|A0A175YFL8|A0A175YFL8_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_029591 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.4e-15
Identity = 51/84 (60.71%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 4  ILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRFLAAL 63
          + E D G+  VKIA+FLLVQ LVY ILS SS+LFS        +F+PARSVSIRRFLAAL
Sbjct: 4  LTEYDLGDMLVKIALFLLVQALVYCILSNSSNLFSNSPPRSPGNFRPARSVSIRRFLAAL 63

Query: 64 SDMPSGGELSPSS--RVRTPSPIH 86
          SDMP+GGELSP++       SP+H
Sbjct: 64 SDMPAGGELSPTTPKNQEQSSPVH 87

[Close]

BLAST of Carg07303 vs. TrEMBL
Match: tr|M5X895|M5X895_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G002500 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.9e-14
Identity = 53/92 (57.61%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 1  MMPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRFL 60
          MM I+E    +  VK+AMF+L+Q LVY ILS SS++FSK  + +S SFKPARSVSIRR L
Sbjct: 1  MMTIMESSIADVLVKVAMFILIQGLVYLILSNSSNIFSKTTR-RSHSFKPARSVSIRRIL 60

Query: 61 AALSDMPSGGELSPS---SRVRTPSPIHREHS 90
          AAL+D+P+GGELSPS   SR    SP  +E++
Sbjct: 61 AALADLPAGGELSPSSNYSRDNLQSPPSQENA 91

[Close]

BLAST of Carg07303 vs. TrEMBL
Match: tr|A0A059D9L9|A0A059D9L9_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03635 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.2e-14
Identity = 47/73 (64.38%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 2  MPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRFLA 61
          M +      +   KIAMFL+VQ LVY ILS+SSD+FSKD+K +SLSFKPARS SIRR LA
Sbjct: 12 MELFSSSLSDVLTKIAMFLVVQALVYLILSKSSDVFSKDKKPRSLSFKPARSNSIRRILA 71

Query: 62 ALSDMPSGGELSP 75
          A+SD+P+G ELSP
Sbjct: 72 AISDVPTGSELSP 84

The following BLAST results are available for this feature:

BLAST of Carg07303 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651805.1	2.2e-27	72.34	PREDICTED: uncharacterized protein LOC105434941 [Cucumis sativus]	[more]
XP_008461750.1	1.5e-23	72.83	PREDICTED: uncharacterized protein LOC103500281 [Cucumis melo]	[more]
OWM73423.1	3.0e-16	62.96	hypothetical protein CDL15_Pgr026522 [Punica granatum] >PKI43140.1 hypothetical ...	[more]
XP_015901100.1	9.6e-15	61.25	uncharacterized protein LOC107434156 [Ziziphus jujuba]	[more]
KZM81978.1	9.6e-15	60.71	hypothetical protein DCAR_029591 [Daucus carota subsp. sativus]	[more]

BLAST of Carg07303 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G05575.1	5.4e-12	56.25	unknown protein	[more]
AT2G31945.1	3.9e-10	53.13	unknown protein	[more]

BLAST of Carg07303 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg07303 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CFW1\|A0A1S3CFW1_CUCME	9.8e-24	72.83	uncharacterized protein LOC103500281 OS=Cucumis melo OX=3656 GN=LOC103500281 PE=...	[more]
tr\|A0A218WLF6\|A0A218WLF6_PUNGR	2.0e-16	62.96	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr026522 PE=4 SV=1	[more]
tr\|A0A175YFL8\|A0A175YFL8_DAUCA	6.4e-15	60.71	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_029591 ...	[more]
tr\|M5X895\|M5X895_PRUPE	1.9e-14	57.61	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G002500 PE=4 SV=1	[more]
tr\|A0A059D9L9\|A0A059D9L9_EUCGR	3.2e-14	64.38	Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07303-RA	Carg07303-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..95
None	No IPR available	PANTHER	PTHR34268	FAMILY NOT NAMED	coord: 5..85

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg07303	Cla017234	Watermelon (97103) v1	carwmB0759
Carg07303	Csa3G706170	Cucumber (Chinese Long) v2	carcuB0779
Carg07303	ClCG10G012700	Watermelon (Charleston Gray)	carwcgB0738
Carg07303	CSPI03G30060	Wild cucumber (PI 183967)	carcpiB0797
Carg07303	Cucsa.177520	Cucumber (Gy14) v1	carcgyB0858
Carg07303	CmaCh14G010350	Cucurbita maxima (Rimu)	carcmaB1057
Carg07303	CmaCh01G002060	Cucurbita maxima (Rimu)	carcmaB1059
Carg07303	CmoCh17G008950	Cucurbita moschata (Rifu)	carcmoB1032
Carg07303	CmoCh14G010520	Cucurbita moschata (Rifu)	carcmoB1031
Carg07303	Lsi02G026240	Bottle gourd (USVL1VR-Ls)	carlsiB697
Carg07303	Cp4.1LG02g15510	Cucurbita pepo (Zucchini)	carcpeB1072
Carg07303	CsGy3G027880	Cucumber (Gy14) v2	carcgybB0756
Carg07303	Cla97C10G195580	Watermelon (97103) v2	carwmbB0794
Carg07303	Bhi11G001223	Wax gourd	carwgoB0894

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg07303	Carg18711	Silver-seed gourd	carcarB382
Carg07303	Carg11249	Silver-seed gourd	carcarB605

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07303	Cucurbita moschata (Rifu)	carcmoB1033
Carg07303	Cucurbita pepo (Zucchini)	carcpeB1073
Carg07303	Cucumber (Chinese Long) v3	carcucB0800
Carg07303	Bottle gourd (USVL1VR-Ls)	carlsiB699
Carg07303	Melon (DHL92) v3.5.1	carmeB0755
Carg07303	Melon (DHL92) v3.6.1	carmedB0770