Csa3G706170 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G706170
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 26738326 .. 26738773 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCTAAGACGGTCAAAGAACCTCCGTCAATAGCTTCCTCCCTCTATAAAAAACCCTCAAAACCTCCTTTTTCTGTATCCAATTTCACTCCCATCTTTTTCATCCATCGACTGATCAACGTTTCATCTCGCATTTTTTCATCCTCAATCCTTCACTATGACGCCGATTTTCGATACCGACGCCGGCGAGATGTTCGTCAGAATCGCCATGTTCGTCTTTATTCAGCTTCTTGTCTATTTGATTCTCTCCAAATCCTCCAATCTCTTCTCCAACGACCAGAAAGTGAGATCTCTCAGCTTTAAACCGGCTCGTTCCGTCAGTATTCGCCGGTTTCTGGCCGCTCTTTCTGACCTTCCTCCCGGTGGTGAGCTTTCTCCGTCGACAAAAGTTTCCACTCCATCGTCGGCTCGTCTCGATCGTTCCGATGATGGTGGCAGGTTGTAA

mRNA sequence

ATGGCGGCTAAGACGGTCAAAGAACCTCCGTCAATAGCTTCCTCCCTCTATAAAAAACCCTCAAAACCTCCTTTTTCTGTATCCAATTTCACTCCCATCTTTTTCATCCATCGACTGATCAACGTTTCATCTCGCATTTTTTCATCCTCAATCCTTCACTATGACGCCGATTTTCGATACCGACGCCGGCGAGATGTTCGTCAGAATCGCCATAAAGTGAGATCTCTCAGCTTTAAACCGGCTCGTTCCGTCAGTATTCGCCGGTTTCTGGCCGCTCTTTCTGACCTTCCTCCCGGTGGTGAGCTTTCTCCGTCGACAAAAGTTTCCACTCCATCGTCGGCTCGTCTCGATCGTTCCGATGATGGTGGCAGGTTGTAA

Coding sequence (CDS)

ATGGCGGCTAAGACGGTCAAAGAACCTCCGTCAATAGCTTCCTCCCTCTATAAAAAACCCTCAAAACCTCCTTTTTCTGTATCCAATTTCACTCCCATCTTTTTCATCCATCGACTGATCAACGTTTCATCTCGCATTTTTTCATCCTCAATCCTTCACTATGACGCCGATTTTCGATACCGACGCCGGCGAGATGTTCGTCAGAATCGCCATAAAGTGAGATCTCTCAGCTTTAAACCGGCTCGTTCCGTCAGTATTCGCCGGTTTCTGGCCGCTCTTTCTGACCTTCCTCCCGGTGGTGAGCTTTCTCCGTCGACAAAAGTTTCCACTCCATCGTCGGCTCGTCTCGATCGTTCCGATGATGGTGGCAGGTTGTAA

Protein sequence

MAAKTVKEPPSIASSLYKKPSKPPFSVSNFTPIFFIHRLINVSSRIFSSSILHYDADFRYRRRRDVRQNRHKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARLDRSDDGGRL*

Homology

[Close]

BLAST of Csa3G706170 vs. TrEMBL
Match: A0A0A0LD48_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G706170 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.0e-62
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   MAAKTVKEPPSIASSLYKKPSKPPFSVSNFTPIFFIHRLINVSSRIFSSSILHYDADFRY 60
           MAAKTVKEPPSIASSLYKKPSKPPFSVSNFTPIFFIHRLINVSSRIFSSSILHYDADFRY
Sbjct: 1   MAAKTVKEPPSIASSLYKKPSKPPFSVSNFTPIFFIHRLINVSSRIFSSSILHYDADFRY 60

Query: 61  RRRRDVRQNRHKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARLDRSD 120
           RRRRDVRQNRHKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARLDRSD
Sbjct: 61  RRRRDVRQNRHKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARLDRSD 120

Query: 121 DGGRL 126
           DGGRL
Sbjct: 121 DGGRL 125

[Close]

BLAST of Csa3G706170 vs. TrEMBL
Match: A0A061GTA7_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_040311 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.3e-06
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 1


Query: 70  RHKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTK 108
           ++KVRSLSFKPARSVSIRR LAA+SDLP G E SPS+K
Sbjct: 38  KNKVRSLSFKPARSVSIRRMLAAISDLPQGVEASPSSK 75

[Close]

BLAST of Csa3G706170 vs. TrEMBL
Match: M0RJ50_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.1e-06
Identity = 27/35 (77.14%), Postives = 32/35 (91.43%), Query Frame = 1


Query: 72  KVRSLSFKPARSVSIRRFLAALSDLPPGGELSPST 107
           K+RSLSF+PARSVS+RR LA LSD+PPGGE SPS+
Sbjct: 37  KLRSLSFRPARSVSVRRLLALLSDMPPGGETSPSS 71

[Close]

BLAST of Csa3G706170 vs. TrEMBL
Match: U7DUH6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0650s00210g PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.6e-06
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 1


Query: 74  RSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTP-SSARLDRSDD 122
           RS SFK ARSVSIRR LA L DLPPGGELSP++  ST   S  +++S+D
Sbjct: 42  RSSSFKTARSVSIRRILAVLQDLPPGGELSPASSKSTQVQSPTVEKSED 90

[Close]

BLAST of Csa3G706170 vs. TAIR10
Match: AT2G31945.1 (AT2G31945.1 unknown protein)

HSP 1 Score: 50.1 bits (118), Expect = 1.2e-06
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 1


Query: 74  RSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSS 114
           R+ SF+P RSVSIRR LAAL D+P G ++SPS+  S+ SS
Sbjct: 41  RAYSFRPMRSVSIRRILAALQDIPAGDDMSPSSNGSSSSS 80

[Close]

BLAST of Csa3G706170 vs. NCBI nr
Match: gi|700203499|gb|KGN58632.1| (hypothetical protein Csa_3G706170 [Cucumis sativus])

HSP 1 Score: 247.3 bits (630), Expect = 1.4e-62
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   MAAKTVKEPPSIASSLYKKPSKPPFSVSNFTPIFFIHRLINVSSRIFSSSILHYDADFRY 60
           MAAKTVKEPPSIASSLYKKPSKPPFSVSNFTPIFFIHRLINVSSRIFSSSILHYDADFRY
Sbjct: 1   MAAKTVKEPPSIASSLYKKPSKPPFSVSNFTPIFFIHRLINVSSRIFSSSILHYDADFRY 60

Query: 61  RRRRDVRQNRHKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARLDRSD 120
           RRRRDVRQNRHKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARLDRSD
Sbjct: 61  RRRRDVRQNRHKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARLDRSD 120

Query: 121 DGGRL 126
           DGGRL
Sbjct: 121 DGGRL 125

[Close]

BLAST of Csa3G706170 vs. NCBI nr
Match: gi|778682889|ref|XP_011651805.1| (PREDICTED: uncharacterized protein LOC105434941 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 1.4e-20
Identity = 55/57 (96.49%), Postives = 55/57 (96.49%), Query Frame = 1


Query: 69  NRHKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARLDRSDDGGRL 126
           N  KVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARLDRSDDGGRL
Sbjct: 39  NDQKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARLDRSDDGGRL 95

[Close]

BLAST of Csa3G706170 vs. NCBI nr
Match: gi|659123611|ref|XP_008461750.1| (PREDICTED: uncharacterized protein LOC103500281 [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 7.5e-11
Identity = 42/57 (73.68%), Postives = 44/57 (77.19%), Query Frame = 1


Query: 69  NRHKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARLDRSDDGGRL 126
           N  K+RSLSFKPARSVSIRRFLAALSDLPPGGELS       PSS R  RSDDG +L
Sbjct: 39  NDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELS-------PSSVRRGRSDDGCKL 88

[Close]

BLAST of Csa3G706170 vs. NCBI nr
Match: gi|672110920|ref|XP_008797977.1| (PREDICTED: uncharacterized protein LOC103713005 [Phoenix dactylifera])

HSP 1 Score: 67.0 bits (162), Expect = 2.7e-08
Identity = 44/106 (41.51%), Postives = 59/106 (55.66%), Query Frame = 1


Query: 16  LYKKPSKPPFSVSNFTPI-FFIHRLINVSSRIFSSSILHYDADFRYRRRRDVRQNRHKVR 75
           L+ +PS     V+ F  I   ++ +++ SS IFS++                     K+R
Sbjct: 7   LFSQPSDLLLKVAMFVLIQALVYLILSKSSNIFSTT---------------------KMR 66

Query: 76  SLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARLDRSD 121
           SLSF+  RSVSIRR LAALSDLPPGGE SPS+ +S  S+   DR D
Sbjct: 67  SLSFRTVRSVSIRRMLAALSDLPPGGEPSPSSSLSPASNRSSDRED 91

[Close]

BLAST of Csa3G706170 vs. NCBI nr
Match: gi|590583029|ref|XP_007014788.1| (Uncharacterized protein TCM_040311 [Theobroma cacao])

HSP 1 Score: 60.1 bits (144), Expect = 3.3e-06
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 1


Query: 70  RHKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTK 108
           ++KVRSLSFKPARSVSIRR LAA+SDLP G E SPS+K
Sbjct: 38  KNKVRSLSFKPARSVSIRRMLAAISDLPQGVEASPSSK 75

The following BLAST results are available for this feature:

BLAST of Csa3G706170 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LD48_CUCSA	1.0e-62	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G706170 PE=4 SV=1	[more]
A0A061GTA7_THECC	2.3e-06	78.95	Uncharacterized protein OS=Theobroma cacao GN=TCM_040311 PE=4 SV=1	[more]
M0RJ50_MUSAM	5.1e-06	77.14	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]
U7DUH6_POPTR	8.6e-06	63.27	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0650s00210g PE=4 SV=1	[more]

BLAST of Csa3G706170 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31945.1	1.2e-06	60.00	unknown protein	[more]

BLAST of Csa3G706170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700203499\|gb\|KGN58632.1\|	1.4e-62	100.00	hypothetical protein Csa_3G706170 [Cucumis sativus]	[more]
gi\|778682889\|ref\|XP_011651805.1\|	1.4e-20	96.49	PREDICTED: uncharacterized protein LOC105434941 [Cucumis sativus]	[more]
gi\|659123611\|ref\|XP_008461750.1\|	7.5e-11	73.68	PREDICTED: uncharacterized protein LOC103500281 [Cucumis melo]	[more]
gi\|672110920\|ref\|XP_008797977.1\|	2.7e-08	41.51	PREDICTED: uncharacterized protein LOC103713005 [Phoenix dactylifera]	[more]
gi\|590583029\|ref\|XP_007014788.1\|	3.3e-06	78.95	Uncharacterized protein TCM_040311 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU125829	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G706170.1	Csa3G706170.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU125829	CU125829	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34268	FAMILY NOT NAMED	coord: 66..125 score: 1.6
None	No IPR available	PANTHER	PTHR34268:SF2	SUBFAMILY NOT NAMED	coord: 66..125 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G706170	Cla017234	Watermelon (97103) v1	cuwmB193
Csa3G706170	ClCG10G012700	Watermelon (Charleston Gray)	cuwcgB190
Csa3G706170	Cla97C10G195580	Watermelon (97103) v2	cuwmbB182
Csa3G706170	Bhi11G001223	Wax gourd	cuwgoB221
Csa3G706170	CSPI03G30060	Wild cucumber (PI 183967)	cpicuB120
Csa3G706170	Cucsa.177520	Cucumber (Gy14) v1	cgycuB268
Csa3G706170	CmaCh14G010350	Cucurbita maxima (Rimu)	cmacuB241
Csa3G706170	CmaCh01G002060	Cucurbita maxima (Rimu)	cmacuB453
Csa3G706170	CmoCh14G010520	Cucurbita moschata (Rifu)	cmocuB228
Csa3G706170	Cp4.1LG02g15510	Cucurbita pepo (Zucchini)	cpecuB545
Csa3G706170	CsGy3G027880	Cucumber (Gy14) v2	cgybcuB111
Csa3G706170	Carg07303	Silver-seed gourd	carcuB0779
Csa3G706170	Carg11249	Silver-seed gourd	carcuB0829

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G706170	Melon (DHL92) v3.6.1	cumedB175
Csa3G706170	Melon (DHL92) v3.6.1	cumedB193
Csa3G706170	Silver-seed gourd	carcuB0386
Csa3G706170	Silver-seed gourd	carcuB0483
Csa3G706170	Cucumber (Chinese Long) v2	cucuB127
Csa3G706170	Cucumber (Gy14) v1	cgycuB030
Csa3G706170	Cucurbita maxima (Rimu)	cmacuB361
Csa3G706170	Cucurbita maxima (Rimu)	cmacuB452
Csa3G706170	Cucurbita maxima (Rimu)	cmacuB886
Csa3G706170	Cucurbita moschata (Rifu)	cmocuB351
Csa3G706170	Cucurbita moschata (Rifu)	cmocuB439
Csa3G706170	Cucurbita moschata (Rifu)	cmocuB440
Csa3G706170	Cucurbita moschata (Rifu)	cmocuB873
Csa3G706170	Melon (DHL92) v3.5.1	cumeB189
Csa3G706170	Melon (DHL92) v3.5.1	cumeB207
Csa3G706170	Cucurbita pepo (Zucchini)	cpecuB137
Csa3G706170	Cucurbita pepo (Zucchini)	cpecuB311
Csa3G706170	Cucurbita pepo (Zucchini)	cpecuB599
Csa3G706170	Bottle gourd (USVL1VR-Ls)	culsiB172
Csa3G706170	Bottle gourd (USVL1VR-Ls)	culsiB183
Csa3G706170	Cucumber (Gy14) v2	cgybcuB305