CmaCh01G002060 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh01G002060
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_27
Location	Cma_Chr01 : 936643 .. 936930 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCCTATTTTGGAAATTGACGCCGGCGAGTTCTTCGTCAAAATCGCCATGTTCCTCTTAGTTCAACTTCTTGTTTATTTTATCCTCTCCGAATCCTCTGATCTCTTCTCTAAGGACCAGAAATTGAAATCTCTCAGCTTCAAACCGGCGAGATCCGTCAGTATTCGCCGGTTGTTAGCAGCCCTTTCCGACATGCCTTCCGGCGGCGAGCTGTCACCGTCGCCGAGAGTTCAGACTCCGTCGTCTATTCACCGGGAGCGTTCCGATAACGGCGGCAGGTTTTAG

mRNA sequence

ATGATGCCTATTTTGGAAATTGACGCCGGCGAGTTCTTCGTCAAAATCGCCATGTTCCTCTTAGTTCAACTTCTTGTTTATTTTATCCTCTCCGAATCCTCTGATCTCTTCTCTAAGGACCAGAAATTGAAATCTCTCAGCTTCAAACCGGCGAGATCCGTCAGTATTCGCCGGTTGTTAGCAGCCCTTTCCGACATGCCTTCCGGCGGCGAGCTGTCACCGTCGCCGAGAGTTCAGACTCCGTCGTCTATTCACCGGGAGCGTTCCGATAACGGCGGCAGGTTTTAG

Coding sequence (CDS)

ATGATGCCTATTTTGGAAATTGACGCCGGCGAGTTCTTCGTCAAAATCGCCATGTTCCTCTTAGTTCAACTTCTTGTTTATTTTATCCTCTCCGAATCCTCTGATCTCTTCTCTAAGGACCAGAAATTGAAATCTCTCAGCTTCAAACCGGCGAGATCCGTCAGTATTCGCCGGTTGTTAGCAGCCCTTTCCGACATGCCTTCCGGCGGCGAGCTGTCACCGTCGCCGAGAGTTCAGACTCCGTCGTCTATTCACCGGGAGCGTTCCGATAACGGCGGCAGGTTTTAG

Protein sequence

MMPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRLLAALSDMPSGGELSPSPRVQTPSSIHRERSDNGGRF

Homology

[Close]

BLAST of CmaCh01G002060 vs. TrEMBL
Match: A0A059D9L9_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_B03635 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.0e-15
Identity = 52/91 (57.14%), Postives = 64/91 (70.33%), Query Frame = 1


Query: 2  MPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRLLA 61
          M +      +   KIAMFL+VQ LVY ILS+SSD+FSKD+K +SLSFKPARS SIRR+LA
Sbjct: 12 MELFSSSLSDVLTKIAMFLVVQALVYLILSKSSDVFSKDKKPRSLSFKPARSNSIRRILA 71

Query: 62 ALSDMPSGGELSPSPRVQTPSSIHRERSDNG 93
          A+SD+P+G ELSP P         R R+D G
Sbjct: 72 AISDVPTGSELSPRP--------ERPRTDGG 94

[Close]

BLAST of CmaCh01G002060 vs. TrEMBL
Match: M5X895_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013922mg PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.2e-14
Identity = 48/75 (64.00%), Postives = 61/75 (81.33%), Query Frame = 1


Query: 1  MMPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRLL 60
          MM I+E    +  VK+AMF+L+Q LVY ILS SS++FSK  + +S SFKPARSVSIRR+L
Sbjct: 1  MMTIMESSIADVLVKVAMFILIQGLVYLILSNSSNIFSKTTR-RSHSFKPARSVSIRRIL 60

Query: 61 AALSDMPSGGELSPS 76
          AAL+D+P+GGELSPS
Sbjct: 61 AALADLPAGGELSPS 74

[Close]

BLAST of CmaCh01G002060 vs. TrEMBL
Match: B9REM2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1775700 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.8e-14
Identity = 48/76 (63.16%), Postives = 59/76 (77.63%), Query Frame = 1


Query: 2  MPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRLLA 61
          M I+E   G+  +K+AMF LVQ LVY ILS+SS++FS   K +S SFKPARSVSIRR LA
Sbjct: 1  MMIMESSLGDMLLKVAMFALVQALVYIILSKSSNIFSNTVK-RSSSFKPARSVSIRRFLA 60

Query: 62 ALSDMPSGGELSPSPR 78
          AL D+P+ GELSPSP+
Sbjct: 61 ALQDLPASGELSPSPK 75

[Close]

BLAST of CmaCh01G002060 vs. TrEMBL
Match: A0A059D594_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_B02611 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-13
Identity = 45/67 (67.16%), Postives = 54/67 (80.60%), Query Frame = 1


Query: 11  EFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRLLAALSDMPSGG 70
           +  VK+A+FL+VQ LVY ILS SSD+FSKD+KL+SLSFKPARS SIRR+LAA SD+P   
Sbjct: 61  DVLVKVAVFLVVQALVYLILSNSSDVFSKDKKLRSLSFKPARSASIRRILAAFSDVPQAT 120

Query: 71  ELSPSPR 78
              PSPR
Sbjct: 121 AGEPSPR 127

[Close]

BLAST of CmaCh01G002060 vs. TrEMBL
Match: A0A124SEI9_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_021506 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.2e-13
Identity = 43/72 (59.72%), Postives = 56/72 (77.78%), Query Frame = 1


Query: 4  ILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRLLAAL 63
          ++E    +  +K A+F++VQ LVY ILS SSD+FSK + ++S SFKPARSVSIRR+ AA+
Sbjct: 1  MVEFSLEDLLIKGAIFVIVQALVYLILSNSSDVFSKSKMMRSFSFKPARSVSIRRMFAAI 60

Query: 64 SDMPSGGELSPS 76
          SDMP GGE SPS
Sbjct: 61 SDMPPGGEQSPS 72

[Close]

BLAST of CmaCh01G002060 vs. TAIR10
Match: AT2G31945.1 (AT2G31945.1 unknown protein)

HSP 1 Score: 67.8 bits (164), Expect = 4.2e-12
Identity = 39/75 (52.00%), Postives = 54/75 (72.00%), Query Frame = 1


Query: 10 GEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLK-SLSFKPARSVSIRRLLAALSDMPS 69
          G   +K+A+F LVQ LVY IL +SS +F++   LK + SF+P RSVSIRR+LAAL D+P+
Sbjct: 6  GTMLMKVALFALVQGLVYLILLKSSRVFARSNSLKRAYSFRPMRSVSIRRILAALQDIPA 65

Query: 70 GGELSPSPRVQTPSS 84
          G ++SPS    + SS
Sbjct: 66 GDDMSPSSNGSSSSS 80

[Close]

BLAST of CmaCh01G002060 vs. TAIR10
Match: AT1G05575.1 (AT1G05575.1 unknown protein)

HSP 1 Score: 67.4 bits (163), Expect = 5.4e-12
Identity = 36/63 (57.14%), Postives = 51/63 (80.95%), Query Frame = 1


Query: 14 VKIAMFLLVQLLVYFILSESSDLFSKDQKLK-SLSFKPARSVSIRRLLAALSDMPSGGEL 73
          +K+++F L+Q LVY ILS+SS +FS  + +K + SF+ ARS+SIRR+LA L DMP+GGE+
Sbjct: 10 MKVSIFALIQGLVYLILSKSSSVFSTSKTMKRAYSFRSARSISIRRILAVLQDMPAGGEM 69

Query: 74 SPS 76
          SPS
Sbjct: 70 SPS 72

[Close]

BLAST of CmaCh01G002060 vs. NCBI nr
Match: gi|778682889|ref|XP_011651805.1| (PREDICTED: uncharacterized protein LOC105434941 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 2.5e-27
Identity = 68/94 (72.34%), Postives = 80/94 (85.11%), Query Frame = 1


Query: 1  MMPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRLL 60
          M PI + DAGE FV+IAMF+ +QLLVY ILS+SS+LFS DQK++SLSFKPARSVSIRR L
Sbjct: 1  MTPIFDTDAGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFL 60

Query: 61 AALSDMPSGGELSPSPRVQTPSSIHRERSDNGGR 95
          AALSD+P GGELSPS +V TPSS   +RSD+GGR
Sbjct: 61 AALSDLPPGGELSPSTKVSTPSSARLDRSDDGGR 94

[Close]

BLAST of CmaCh01G002060 vs. NCBI nr
Match: gi|659123611|ref|XP_008461750.1| (PREDICTED: uncharacterized protein LOC103500281 [Cucumis melo])

HSP 1 Score: 115.5 bits (288), Expect = 4.9e-23
Identity = 66/92 (71.74%), Postives = 74/92 (80.43%), Query Frame = 1


Query: 1  MMPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRLL 60
          M PI E DAGE FV+IAMF+ VQLLVY ILS+SS+LFS DQKL+SLSFKPARSVSIRR L
Sbjct: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 61 AALSDMPSGGELSPSPRVQTPSSIHRERSDNG 93
          AALSD+P GGELS       PSS+ R RSD+G
Sbjct: 61 AALSDLPPGGELS-------PSSVRRGRSDDG 85

[Close]

BLAST of CmaCh01G002060 vs. NCBI nr
Match: gi|629122616|gb|KCW87106.1| (hypothetical protein EUGRSUZ_B03635, partial [Eucalyptus grandis])

HSP 1 Score: 89.7 bits (221), Expect = 2.9e-15
Identity = 52/91 (57.14%), Postives = 64/91 (70.33%), Query Frame = 1


Query: 2  MPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRLLA 61
          M +      +   KIAMFL+VQ LVY ILS+SSD+FSKD+K +SLSFKPARS SIRR+LA
Sbjct: 12 MELFSSSLSDVLTKIAMFLVVQALVYLILSKSSDVFSKDKKPRSLSFKPARSNSIRRILA 71

Query: 62 ALSDMPSGGELSPSPRVQTPSSIHRERSDNG 93
          A+SD+P+G ELSP P         R R+D G
Sbjct: 72 AISDVPTGSELSPRP--------ERPRTDGG 94

[Close]

BLAST of CmaCh01G002060 vs. NCBI nr
Match: gi|1009105980|ref|XP_015901100.1| (PREDICTED: uncharacterized protein LOC107434156 [Ziziphus jujuba])

HSP 1 Score: 87.4 bits (215), Expect = 1.4e-14
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = 1


Query: 4  ILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRLLAAL 63
          +LE    +  +K+ +F LVQ LVY ILS+SS +FSK  K +S SFKPARSVS+RR LAAL
Sbjct: 2  VLESGFSDMLIKVGLFFLVQALVYLILSKSSSIFSKSTK-RSHSFKPARSVSVRRFLAAL 61

Query: 64 SDMPSGGELSPSPR--VQTPS 83
          SDMP+GGELSPSP+  +Q+P+
Sbjct: 62 SDMPAGGELSPSPKEHLQSPT 81

[Close]

BLAST of CmaCh01G002060 vs. NCBI nr
Match: gi|802795800|ref|XP_012092598.1| (PREDICTED: uncharacterized protein LOC105650327 [Jatropha curcas])

HSP 1 Score: 87.0 bits (214), Expect = 1.9e-14
Identity = 49/83 (59.04%), Postives = 62/83 (74.70%), Query Frame = 1


Query: 1  MMPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRLL 60
          MM I+E   G+  +KI MF +VQ LVY ILS+SS++FSK  K ++ SF+PARSVSIRR+L
Sbjct: 1  MMTIMESSLGDMLLKIVMFAVVQALVYIILSKSSNIFSKTVK-RTYSFRPARSVSIRRIL 60

Query: 61 AALSDMPSGGELSPSPRVQTPSS 84
          A L DMP+GGELSP P+    SS
Sbjct: 61 AVLEDMPAGGELSPPPKNSLSSS 82

The following BLAST results are available for this feature:

BLAST of CmaCh01G002060 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh01G002060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A059D9L9_EUCGR	2.0e-15	57.14	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_B03635 PE=4 ...	[more]
M5X895_PRUPE	2.2e-14	64.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013922mg PE=4 SV=1	[more]
B9REM2_RICCO	3.8e-14	63.16	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1775700 PE=4 SV=1	[more]
A0A059D594_EUCGR	1.4e-13	67.16	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_B02611 PE=4 ...	[more]
A0A124SEI9_CYNCS	3.2e-13	59.72	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_021506 PE=4 ...	[more]

BLAST of CmaCh01G002060 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31945.1	4.2e-12	52.00	unknown protein	[more]
AT1G05575.1	5.4e-12	57.14	unknown protein	[more]

BLAST of CmaCh01G002060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778682889\|ref\|XP_011651805.1\|	2.5e-27	72.34	PREDICTED: uncharacterized protein LOC105434941 [Cucumis sativus]	[more]
gi\|659123611\|ref\|XP_008461750.1\|	4.9e-23	71.74	PREDICTED: uncharacterized protein LOC103500281 [Cucumis melo]	[more]
gi\|629122616\|gb\|KCW87106.1\|	2.9e-15	57.14	hypothetical protein EUGRSUZ_B03635, partial [Eucalyptus grandis]	[more]
gi\|1009105980\|ref\|XP_015901100.1\|	1.4e-14	60.49	PREDICTED: uncharacterized protein LOC107434156 [Ziziphus jujuba]	[more]
gi\|802795800\|ref\|XP_012092598.1\|	1.9e-14	59.04	PREDICTED: uncharacterized protein LOC105650327 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G002060.1	CmaCh01G002060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34268	FAMILY NOT NAMED	coord: 1..95 score: 4.3
None	No IPR available	PANTHER	PTHR34268:SF2	SUBFAMILY NOT NAMED	coord: 1..95 score: 4.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh01G002060	Cucsa.177520	Cucumber (Gy14) v1	cgycmaB0499
CmaCh01G002060	Cla017234	Watermelon (97103) v1	cmawmB416
CmaCh01G002060	Cla015284	Watermelon (97103) v1	cmawmB408
CmaCh01G002060	Csa3G706170	Cucumber (Chinese Long) v2	cmacuB453
CmaCh01G002060	ClCG09G003700	Watermelon (Charleston Gray)	cmawcgB378
CmaCh01G002060	ClCG10G012700	Watermelon (Charleston Gray)	cmawcgB387
CmaCh01G002060	CSPI03G30060	Wild cucumber (PI 183967)	cmacpiB456
CmaCh01G002060	CmoCh14G010520	Cucurbita moschata (Rifu)	cmacmoB462
CmaCh01G002060	CmoCh17G008950	Cucurbita moschata (Rifu)	cmacmoB466
CmaCh01G002060	Lsi02G026240	Bottle gourd (USVL1VR-Ls)	cmalsiB418
CmaCh01G002060	Cp4.1LG02g15510	Cucurbita pepo (Zucchini)	cmacpeB491
CmaCh01G002060	Cla97C09G165950	Watermelon (97103) v2	cmawmbB509
CmaCh01G002060	Cla97C10G195580	Watermelon (97103) v2	cmawmbB445
CmaCh01G002060	Bhi11G001223	Wax gourd	cmawgoB0553
CmaCh01G002060	CsGy3G027880	Cucumber (Gy14) v2	cgybcmaB366
CmaCh01G002060	Carg11249	Silver-seed gourd	carcmaB1134
CmaCh01G002060	Carg07303	Silver-seed gourd	carcmaB1059
CmaCh01G002060	Carg18711	Silver-seed gourd	carcmaB0498

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh01G002060	CmaCh14G010350	Cucurbita maxima (Rimu)	cmacmaB255

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh01G002060	Cucumber (Chinese Long) v3	cmacucB0545
CmaCh01G002060	Cucumber (Chinese Long) v3	cmacucB0595
CmaCh01G002060	Cucurbita maxima (Rimu)	cmacmaB360
CmaCh01G002060	Cucurbita maxima (Rimu)	cmacmaB440
CmaCh01G002060	Cucurbita moschata (Rifu)	cmacmoB468
CmaCh01G002060	Cucurbita moschata (Rifu)	cmacmoB490
CmaCh01G002060	Melon (DHL92) v3.5.1	cmameB426
CmaCh01G002060	Cucurbita pepo (Zucchini)	cmacpeB465
CmaCh01G002060	Cucurbita pepo (Zucchini)	cmacpeB472
CmaCh01G002060	Cucurbita pepo (Zucchini)	cmacpeB494
CmaCh01G002060	Bottle gourd (USVL1VR-Ls)	cmalsiB422
CmaCh01G002060	Bottle gourd (USVL1VR-Ls)	cmalsiB439
CmaCh01G002060	Cucumber (Gy14) v2	cgybcmaB938
CmaCh01G002060	Melon (DHL92) v3.6.1	cmamedB461
CmaCh01G002060	Melon (DHL92) v3.6.1	cmamedB489
CmaCh01G002060	Silver-seed gourd	carcmaB0626