Cucsa.153330 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.153330
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Oxidoreductase/transition metal ion-binding protein
Location	scaffold01124 : 486566 .. 486874 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTGTGTGTTTGTTGTGATCCTTTTGGTGGTGATGGCCTTTTCATGGTACTTCTTCTACTATTCATTTCTTGAAGATTTTATCTTCCAACTCAAGCTCTTCCTTCTCACTGTCCCCTTGCTTCTCCTCCTCCTCCTCCACCTCCTCTCTTTCGGCTTCTCCTTtCTCCTCCCTTTACCCGAGCAGGACTCCCTCCATCGTGCTGGTGGCTCACCCTGGGGCGTCGCCATCCTCCTCGTCTTCTTTCTCTATGTTATCTCTCACCAGTCTCATTACCACCAACGTTGGTTTCCTTTCGGATATAGATAA

mRNA sequence

CTTTGTGTGTTTGTTGTGATCCTTTTGGTGGTGATGGCCTTTTCATGGTACTTCTTCTACTATTCATTTCTTGAAGATTTTATCTTCCAACTCAAGCTCTTCCTTCTCACTGTCCCCTTGcttctcctcctcctcctccacctcctcTCTTTCGGCTTCTCCTTTCTCCTCCCTTTACCCGAGCAGGACTCCCTCCATCGTGCTGGTGGCTCACCCTGGGGCGTCGCCATCCTCCTCGTCTTCTTTCTCTATGTTATCTCTCACCAGTCTCATTACCACCAACGTTGGTTTCCTTTCGGATATAGATAA

Coding sequence (CDS)

CTTTGTGTGTTTGTTGTGATCCTTTTGGTGGTGATGGCCTTTTCATGGTACTTCTTCTACTATTCATTTCTTGAAGATTTTATCTTCCAACTCAAGCTCTTCCTTCTCACTGTCCCCTTGCTTCTCCTCCTCCTCCTCCACCTCCTCTCTTTCGGCTTCTCCTTtCTCCTCCCTTTACCCGAGCAGGACTCCCTCCATCGTGCTGGTGGCTCACCCTGGGGCGTCGCCATCCTCCTCGTCTTCTTTCTCTATGTTATCTCTCACCAGTCTCATTACCACCAACGTTGGTTTCCTTTCGGATATAGATAA

Protein sequence

LCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTVPLLLLLLLHLLSFGFSFLLPLPEQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRWFPFGYR*

Homology

[Close]

BLAST of Cucsa.153330 vs. TrEMBL
Match: A0A0A0KZ55_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G280660 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.0e-52
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   LCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTVPLLLLLLLHLLSFGFSFLLPLP 60
           LCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTVPLLLLLLLHLLSFGFSFLLPLP
Sbjct: 23  LCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTVPLLLLLLLHLLSFGFSFLLPLP 82

Query: 61  EQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRWFPFGYR 103
           EQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRWFPFGYR
Sbjct: 83  EQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRWFPFGYR 124

[Close]

BLAST of Cucsa.153330 vs. TrEMBL
Match: A0A061GR99_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_040264 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 8.3e-31
Identity = 65/100 (65.00%), Postives = 76/100 (76.00%), Query Frame = 1


Query: 1   LCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTVPLLLLLLLHLLSFGFSFLLPLP 60
           LC FV IL  V+ FSWY  Y S  EDFI QLK FL+  P++LLLL+H  S    FL+PLP
Sbjct: 20  LCFFVSILFFVLGFSWYINYESMFEDFINQLKFFLMLSPVVLLLLIHCFSGSVPFLIPLP 79

Query: 61  EQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRWFPFG 101
           EQDSLHR GGSPWGVA+LLVF LY+IS+QS +H+RWFP G
Sbjct: 80  EQDSLHRTGGSPWGVALLLVFLLYMISYQSSFHERWFPLG 119

[Close]

BLAST of Cucsa.153330 vs. TrEMBL
Match: A0A0D2VJW7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G248300 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.7e-29
Identity = 62/100 (62.00%), Postives = 77/100 (77.00%), Query Frame = 1


Query: 1   LCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTVPLLLLLLLHLLSFGFSFLLPLP 60
           LC F+ IL  V+ FSWY  Y S LEDF+ QLK FL+  P++LLLLLH  S     L+P P
Sbjct: 20  LCFFISILFFVLGFSWYLNYESVLEDFMNQLKFFLMLAPIVLLLLLHCFSGRVPSLIPEP 79

Query: 61  EQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRWFPFG 101
           E+DSLHRAGGSPWGVA++LV  LY+IS+QS++H+RWFPFG
Sbjct: 80  EKDSLHRAGGSPWGVALVLVLLLYMISYQSYFHERWFPFG 119

[Close]

BLAST of Cucsa.153330 vs. TrEMBL
Match: M5WKK9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013462mg PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 3.5e-29
Identity = 60/98 (61.22%), Postives = 77/98 (78.57%), Query Frame = 1


Query: 1   LCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTVPLLLLLLLHLLSFGFSFLLPLP 60
           LC F+ IL+ ++ F+WY  Y S  ED + Q+KLFL+ VPLLLLL++H LS G SF LP P
Sbjct: 20  LCFFISILVFILGFTWYINYESMFEDLMTQVKLFLMLVPLLLLLVVHCLSGGLSFFLPFP 79

Query: 61  EQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRWFP 99
           E+DSLHRAGGSPWGV ++LVF L +IS+QS +H+RWFP
Sbjct: 80  EKDSLHRAGGSPWGVGLVLVFLLIMISYQSSFHERWFP 117

[Close]

BLAST of Cucsa.153330 vs. TrEMBL
Match: A0A0B2RVZ3_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_004241 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.3e-28
Identity = 64/103 (62.14%), Postives = 81/103 (78.64%), Query Frame = 1


Query: 1   LCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTVPLLLLLLLHLLSFGFSFLLPLP 60
           L  FV+IL  V+AFSWY  Y S LED + Q+K+FL  VPLLLLLL+H LS G SF +PLP
Sbjct: 22  LIFFVLILFFVLAFSWYINYESLLEDLLVQVKIFLALVPLLLLLLVHCLSSGASFPIPLP 81

Query: 61  EQ-DSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRWFPFGYR 103
           E+ +SLHRAGGSPWGVA+LL+F L+++++QS +HQRWFP   R
Sbjct: 82  EERESLHRAGGSPWGVALLLLFVLFMMAYQSSFHQRWFPLATR 124

[Close]

BLAST of Cucsa.153330 vs. TAIR10
Match: AT5G19875.1 (AT5G19875.1 unknown protein)

HSP 1 Score: 119.4 bits (298), Expect = 1.3e-27
Identity = 51/100 (51.00%), Postives = 71/100 (71.00%), Query Frame = 1


Query: 1   LCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTVPLLLLLLLHLLSFGFSFLLPLP 60
           LC   +++  V++F+WY  + S +ED +  LKL  +  PL LLLL+H  S G SF +P P
Sbjct: 22  LCFLFIVVFFVLSFTWYLNFESIIEDTLDHLKLVFIFTPLFLLLLVHFFSGGLSFYVPWP 81

Query: 61  EQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRWFPFG 101
           EQDS+HRAG SPWGVA +LV  L+++S+QS + +RWFPFG
Sbjct: 82  EQDSIHRAGSSPWGVAAVLVLILFMVSYQSDFQERWFPFG 121

[Close]

BLAST of Cucsa.153330 vs. TAIR10
Match: AT2G31940.1 (AT2G31940.1 unknown protein)

HSP 1 Score: 105.9 bits (263), Expect = 1.5e-23
Identity = 51/104 (49.04%), Postives = 71/104 (68.27%), Query Frame = 1


Query: 1   LCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTVPLLLLLLLHLLSFG------FS 60
           LCVFV+ILL+ +  SWY  Y   +E F +Q KL L+  PLLLLL +H LS         +
Sbjct: 15  LCVFVLILLMFVTISWYASYEPVIEGFTYQFKLALMASPLLLLLAVHFLSDDQGVGGMMT 74

Query: 61  FLLPLPEQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRWFP 99
            L+ L E++SL+RAGG+PWGVA +LVF  +++S+QS + +RWFP
Sbjct: 75  SLIHLNERESLYRAGGTPWGVAFMLVFLFFMVSYQSQFQERWFP 118

[Close]

BLAST of Cucsa.153330 vs. TAIR10
Match: AT2G21180.1 (AT2G21180.1 unknown protein)

HSP 1 Score: 47.4 bits (111), Expect = 6.3e-06
Identity = 30/105 (28.57%), Postives = 46/105 (43.81%), Query Frame = 1


Query: 3   VFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTVPLLLLLLLHLLS-----------F 62
           + + +  V +  SWYF      E    Q+   LL +PL L++L+  LS           F
Sbjct: 25  LILAVASVFLLSSWYFSLEEAAESAEEQINFALLLIPLFLIVLVRWLSSMENPDALLGMF 84

Query: 63  GFSFLLPLPEQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRW 97
             S         +    G SPWGVA L+V  L ++ +QS + + W
Sbjct: 85  SSSRRTTYVSPGAGGDGGSSPWGVAALIVLLLVLLQYQSSFLEMW 129

[Close]

BLAST of Cucsa.153330 vs. NCBI nr
Match: gi|700198931|gb|KGN54089.1| (hypothetical protein Csa_4G280660 [Cucumis sativus])

HSP 1 Score: 213.8 bits (543), Expect = 1.4e-52
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   LCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTVPLLLLLLLHLLSFGFSFLLPLP 60
           LCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTVPLLLLLLLHLLSFGFSFLLPLP
Sbjct: 23  LCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTVPLLLLLLLHLLSFGFSFLLPLP 82

Query: 61  EQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRWFPFGYR 103
           EQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRWFPFGYR
Sbjct: 83  EQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRWFPFGYR 124

[Close]

BLAST of Cucsa.153330 vs. NCBI nr
Match: gi|590582936|ref|XP_007014761.1| (Uncharacterized protein TCM_040264 [Theobroma cacao])

HSP 1 Score: 141.0 bits (354), Expect = 1.2e-30
Identity = 65/100 (65.00%), Postives = 76/100 (76.00%), Query Frame = 1


Query: 1   LCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTVPLLLLLLLHLLSFGFSFLLPLP 60
           LC FV IL  V+ FSWY  Y S  EDFI QLK FL+  P++LLLL+H  S    FL+PLP
Sbjct: 20  LCFFVSILFFVLGFSWYINYESMFEDFINQLKFFLMLSPVVLLLLIHCFSGSVPFLIPLP 79

Query: 61  EQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRWFPFG 101
           EQDSLHR GGSPWGVA+LLVF LY+IS+QS +H+RWFP G
Sbjct: 80  EQDSLHRTGGSPWGVALLLVFLLYMISYQSSFHERWFPLG 119

[Close]

BLAST of Cucsa.153330 vs. NCBI nr
Match: gi|823259654|ref|XP_012462541.1| (PREDICTED: uncharacterized protein LOC105782384 [Gossypium raimondii])

HSP 1 Score: 136.0 bits (341), Expect = 3.8e-29
Identity = 62/100 (62.00%), Postives = 77/100 (77.00%), Query Frame = 1


Query: 1   LCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTVPLLLLLLLHLLSFGFSFLLPLP 60
           LC F+ IL  V+ FSWY  Y S LEDF+ QLK FL+  P++LLLLLH  S     L+P P
Sbjct: 20  LCFFISILFFVLGFSWYLNYESVLEDFMNQLKFFLMLAPIVLLLLLHCFSGRVPSLIPEP 79

Query: 61  EQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRWFPFG 101
           E+DSLHRAGGSPWGVA++LV  LY+IS+QS++H+RWFPFG
Sbjct: 80  EKDSLHRAGGSPWGVALVLVLLLYMISYQSYFHERWFPFG 119

[Close]

BLAST of Cucsa.153330 vs. NCBI nr
Match: gi|1009124038|ref|XP_015878858.1| (PREDICTED: uncharacterized protein LOC107415088 [Ziziphus jujuba])

HSP 1 Score: 135.6 bits (340), Expect = 5.0e-29
Identity = 62/100 (62.00%), Postives = 79/100 (79.00%), Query Frame = 1


Query: 1   LCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTVPLLLLLLLHLLSFG-FSFLLPL 60
           LC F+VIL  V+ F+WY  Y S  ED I Q+KLFL+ +P+LLLLL+H LS G   FL P 
Sbjct: 22  LCFFIVILFTVLGFTWYINYESKFEDLITQVKLFLMLLPVLLLLLVHCLSSGSIPFLAPW 81

Query: 61  PEQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRWFPF 100
           PE+DSLHRAGGSPWGV +LLVF +++IS+QS++H+RWFPF
Sbjct: 82  PEKDSLHRAGGSPWGVGVLLVFLIFMISYQSYFHERWFPF 121

[Close]

BLAST of Cucsa.153330 vs. NCBI nr
Match: gi|595830851|ref|XP_007206151.1| (hypothetical protein PRUPE_ppa013462mg [Prunus persica])

HSP 1 Score: 135.6 bits (340), Expect = 5.0e-29
Identity = 60/98 (61.22%), Postives = 77/98 (78.57%), Query Frame = 1


Query: 1   LCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTVPLLLLLLLHLLSFGFSFLLPLP 60
           LC F+ IL+ ++ F+WY  Y S  ED + Q+KLFL+ VPLLLLL++H LS G SF LP P
Sbjct: 20  LCFFISILVFILGFTWYINYESMFEDLMTQVKLFLMLVPLLLLLVVHCLSGGLSFFLPFP 79

Query: 61  EQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRWFP 99
           E+DSLHRAGGSPWGV ++LVF L +IS+QS +H+RWFP
Sbjct: 80  EKDSLHRAGGSPWGVGLVLVFLLIMISYQSSFHERWFP 117

The following BLAST results are available for this feature:

BLAST of Cucsa.153330 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZ55_CUCSA	1.0e-52	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G280660 PE=4 SV=1	[more]
A0A061GR99_THECC	8.3e-31	65.00	Uncharacterized protein OS=Theobroma cacao GN=TCM_040264 PE=4 SV=1	[more]
A0A0D2VJW7_GOSRA	2.7e-29	62.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G248300 PE=4 SV=1	[more]
M5WKK9_PRUPE	3.5e-29	61.22	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013462mg PE=4 SV=1	[more]
A0A0B2RVZ3_GLYSO	1.3e-28	62.14	Uncharacterized protein OS=Glycine soja GN=glysoja_004241 PE=4 SV=1	[more]

BLAST of Cucsa.153330 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G19875.1	1.3e-27	51.00	unknown protein	[more]
AT2G31940.1	1.5e-23	49.04	unknown protein	[more]
AT2G21180.1	6.3e-06	28.57	unknown protein	[more]

BLAST of Cucsa.153330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198931\|gb\|KGN54089.1\|	1.4e-52	100.00	hypothetical protein Csa_4G280660 [Cucumis sativus]	[more]
gi\|590582936\|ref\|XP_007014761.1\|	1.2e-30	65.00	Uncharacterized protein TCM_040264 [Theobroma cacao]	[more]
gi\|823259654\|ref\|XP_012462541.1\|	3.8e-29	62.00	PREDICTED: uncharacterized protein LOC105782384 [Gossypium raimondii]	[more]
gi\|1009124038\|ref\|XP_015878858.1\|	5.0e-29	62.00	PREDICTED: uncharacterized protein LOC107415088 [Ziziphus jujuba]	[more]
gi\|595830851\|ref\|XP_007206151.1\|	5.0e-29	61.22	hypothetical protein PRUPE_ppa013462mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.153330.1	Cucsa.153330.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33306	FAMILY NOT NAMED	coord: 1..102 score: 1.3
None	No IPR available	PANTHER	PTHR33306:SF3	SUBFAMILY NOT NAMED	coord: 1..102 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.153330	Cla003181	Watermelon (97103) v1	cgywmB272
Cucsa.153330	Csa4G280660	Cucumber (Chinese Long) v2	cgycuB220
Cucsa.153330	MELO3C014664	Melon (DHL92) v3.5.1	cgymeB257
Cucsa.153330	ClCG02G023860	Watermelon (Charleston Gray)	cgywcgB258
Cucsa.153330	CSPI04G13170	Wild cucumber (PI 183967)	cgycpiB225
Cucsa.153330	CmaCh20G000440	Cucurbita maxima (Rimu)	cgycmaB0423
Cucsa.153330	CmoCh20G000460	Cucurbita moschata (Rifu)	cgycmoB0423
Cucsa.153330	Lsi10G009850	Bottle gourd (USVL1VR-Ls)	cgylsiB245
Cucsa.153330	Cp4.1LG16g09130	Cucurbita pepo (Zucchini)	cgycpeB0409
Cucsa.153330	MELO3C014664.2	Melon (DHL92) v3.6.1	cgymedB255
Cucsa.153330	Cla97C02G050010	Watermelon (97103) v2	cgywmbB259
Cucsa.153330	Bhi10G000330	Wax gourd	cgywgoB298
Cucsa.153330	Carg06937	Silver-seed gourd	carcgyB0603

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.153330	Silver-seed gourd	carcgyB1040
Cucsa.153330	Cucumber (Chinese Long) v3	cgycucB231
Cucsa.153330	Cucumber (Gy14) v1	cgycgyB094
Cucsa.153330	Cucurbita maxima (Rimu)	cgycmaB0424
Cucsa.153330	Cucurbita moschata (Rifu)	cgycmoB0424
Cucsa.153330	Cucurbita pepo (Zucchini)	cgycpeB0410