Cla97C02G050010 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C02G050010
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Oxidoreductase/transition metal ion-binding protein
Location	Cla97Chr02 : 37325464 .. 37325844 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGATACAACAACTACTACTACTACAGGTACCCTTACTTGGAGTACTTGACATTGCCTCCATTGCAGCTTTGTGTGTTTGGGATGATCCTTCTGCTGGTGATGGCCTTTTCATGGTACATTTTCTATGACTCCTTTCTTGAGGATTTCATCTTCCAACTCAAGCTCTTCCTCCTCACTGTCCCCTTGCTTCTCCTCCTCCTCCTACACATTCTCTCCCTCGGCCTCCCCTTTCTCGTCCCCTTGCCCCAGCAGGACTACCTCCACCGTGCCGGTGGCTCACCCTGGGGCGTCGCCCTCCTCCTTGTCTTCCTTCTCTATGTCATCTCTCACCAGTCTCACTACCACCAACGTTGGTTCCCTTTCGGGTATAGATAA

mRNA sequence

ATGGCGAGATACAACAACTACTACTACTACAGGTACCCTTACTTGGAGTACTTGACATTGCCTCCATTGCAGCTTTGTGTGTTTGGGATGATCCTTCTGCTGGTGATGGCCTTTTCATGGTACATTTTCTATGACTCCTTTCTTGAGGATTTCATCTTCCAACTCAAGCTCTTCCTCCTCACTGTCCCCTTGCTTCTCCTCCTCCTCCTACACATTCTCTCCCTCGGCCTCCCCTTTCTCGTCCCCTTGCCCCAGCAGGACTACCTCCACCGTGCCGGTGGCTCACCCTGGGGCGTCGCCCTCCTCCTTGTCTTCCTTCTCTATGTCATCTCTCACCAGTCTCACTACCACCAACGTTGGTTCCCTTTCGGGTATAGATAA

Coding sequence (CDS)

ATGGCGAGATACAACAACTACTACTACTACAGGTACCCTTACTTGGAGTACTTGACATTGCCTCCATTGCAGCTTTGTGTGTTTGGGATGATCCTTCTGCTGGTGATGGCCTTTTCATGGTACATTTTCTATGACTCCTTTCTTGAGGATTTCATCTTCCAACTCAAGCTCTTCCTCCTCACTGTCCCCTTGCTTCTCCTCCTCCTCCTACACATTCTCTCCCTCGGCCTCCCCTTTCTCGTCCCCTTGCCCCAGCAGGACTACCTCCACCGTGCCGGTGGCTCACCCTGGGGCGTCGCCCTCCTCCTTGTCTTCCTTCTCTATGTCATCTCTCACCAGTCTCACTACCACCAACGTTGGTTCCCTTTCGGGTATAGATAA

Protein sequence

MARYNNYYYYRYPYLEYLTLPPLQLCVFGMILLLVMAFSWYIFYDSFLEDFIFQLKLFLLTVPLLLLLLLHILSLGLPFLVPLPQQDYLHRAGGSPWGVALLLVFLLYVISHQSHYHQRWFPFGYR

Homology

[Close]

BLAST of Cla97C02G050010 vs. NCBI nr
Match: XP_022756288.1 (uncharacterized protein LOC111304026 [Durio zibethinus])

HSP 1 Score: 149.8 bits (377), Expect = 6.1e-33
Identity = 73/114 (64.04%), Postives = 91/114 (79.82%), Query Frame = 0


Query: 9   YYRYPYLEYLTLPPLQLCVFGMILLLVMAFSWYIFYDSFLEDFIFQLKLFLLTVPLLLXX 68
           YYRY +L+YL+ PP+ LC+F  IL  V+ FSWYI Y+S  EDFI QLK FL+  PL+L  
Sbjct: 4   YYRYSFLDYLSPPPVHLCLFVFILFFVLGFSWYINYESMFEDFINQLKFFLMLTPLVLLV 63

Query: 69  XLHILSLGLPFLVPLPQQDYLHRAGGSPWGVALLLVFLLYVISHQSHYHQRWFP 123
            +H LS  +PFL+PLP+QD LHRAGGSPWGVAL+LVFLLY+IS+QS +H+RWFP
Sbjct: 64  LVHCLSGRVPFLIPLPEQDSLHRAGGSPWGVALVLVFLLYMISYQSSFHERWFP 117

[Close]

BLAST of Cla97C02G050010 vs. NCBI nr
Match: XP_007014761.1 (PREDICTED: uncharacterized protein LOC18589643 [Theobroma cacao] >EOY32380.1 Uncharacterized protein TCM_040264 [Theobroma cacao])

HSP 1 Score: 147.9 bits (372), Expect = 2.3e-32
Identity = 73/116 (62.93%), Postives = 89/116 (76.72%), Query Frame = 0


Query: 9   YYRYPYLEYLTLPPLQLCVFGMILLLVMAFSWYIFYDSFLEDFIFQLKLFLLTVPLLLXX 68
           YYR  +L+YL+LPPL LC F  IL  V+ FSWYI Y+S  EDFI QLK FL+  P++L  
Sbjct: 4   YYRDSFLDYLSLPPLHLCFFVSILFFVLGFSWYINYESMFEDFINQLKFFLMLSPVVLLL 63

Query: 69  XLHILSLGLPFLVPLPQQDYLHRAGGSPWGVALLLVFLLYVISHQSHYHQRWFPFG 125
            +H  S  +PFL+PLP+QD LHR GGSPWGVALLLVFLLY+IS+QS +H+RWFP G
Sbjct: 64  LIHCFSGSVPFLIPLPEQDSLHRTGGSPWGVALLLVFLLYMISYQSSFHERWFPLG 119

[Close]

BLAST of Cla97C02G050010 vs. NCBI nr
Match: XP_021278994.1 (uncharacterized protein LOC110412707 [Herrania umbratica])

HSP 1 Score: 146.7 bits (369), Expect = 5.2e-32
Identity = 73/116 (62.93%), Postives = 90/116 (77.59%), Query Frame = 0


Query: 9   YYRYPYLEYLTLPPLQLCVFGMILLLVMAFSWYIFYDSFLEDFIFQLKLFLLTVPLLLXX 68
           YYR  +L+YL+LPPL LCVF  IL  V+ FSWYI Y+S  EDFI QLK FL+  P++L  
Sbjct: 4   YYRDSFLDYLSLPPLHLCVFVSILFFVLGFSWYINYESMFEDFINQLKFFLMLSPVVLLL 63

Query: 69  XLHILSLGLPFLVPLPQQDYLHRAGGSPWGVALLLVFLLYVISHQSHYHQRWFPFG 125
            +H  S  +PFL+PLP+QD LHRAGGSPWGVAL+LVFLLY+IS+QS + +RWFP G
Sbjct: 64  LVHCFSGSVPFLIPLPEQDSLHRAGGSPWGVALVLVFLLYMISYQSSFQERWFPLG 119

[Close]

BLAST of Cla97C02G050010 vs. NCBI nr
Match: XP_012462541.1 (PREDICTED: uncharacterized protein LOC105782384 [Gossypium raimondii] >XP_016734953.1 PREDICTED: uncharacterized protein LOC107945445 [Gossypium hirsutum] >XP_017605397.1 PREDICTED: uncharacterized protein LOC108452152 [Gossypium arboreum] >KJB83454.1 hypothetical protein B456_013G248300 [Gossypium raimondii] >PPE01034.1 hypothetical protein GOBAR_DD01999 [Gossypium barbadense])

HSP 1 Score: 142.9 bits (359), Expect = 7.4e-31
Identity = 70/116 (60.34%), Postives = 90/116 (77.59%), Query Frame = 0


Query: 9   YYRYPYLEYLTLPPLQLCVFGMILLLVMAFSWYIFYDSFLEDFIFQLKLFLLTVPLLLXX 68
           YYR  Y++YL+LPPL LC F  IL  V+ FSWY+ Y+S LEDF+ QLK FL+  P++L  
Sbjct: 4   YYRDSYMDYLSLPPLHLCFFISILFFVLGFSWYLNYESVLEDFMNQLKFFLMLAPIVLLL 63

Query: 69  XLHILSLGLPFLVPLPQQDYLHRAGGSPWGVALLLVFLLYVISHQSHYHQRWFPFG 125
            LH  S  +P L+P P++D LHRAGGSPWGVAL+LV LLY+IS+QS++H+RWFPFG
Sbjct: 64  LLHCFSGRVPSLIPEPEKDSLHRAGGSPWGVALVLVLLLYMISYQSYFHERWFPFG 119

[Close]

BLAST of Cla97C02G050010 vs. NCBI nr
Match: XP_022731911.1 (uncharacterized protein LOC111286288 [Durio zibethinus])

HSP 1 Score: 139.8 bits (351), Expect = 6.3e-30
Identity = 70/111 (63.06%), Postives = 86/111 (77.48%), Query Frame = 0


Query: 9   YYRYPYLEYLTLPPLQLCVFGMILLLVMAFSWYIFYDSFLEDFIFQLKLFLLTVPLLLXX 68
           YYRY YL+YL+ PPL LC F  IL  V+  SWYI Y+S  EDFI QLK FL+  P++L  
Sbjct: 4   YYRYSYLDYLSPPPLHLCFFVFILFFVLGLSWYINYESMFEDFINQLKFFLILSPIVLLL 63

Query: 69  XLHILSLGLPFLVPLPQQDYLHRAGGSPWGVALLLVFLLYVISHQSHYHQR 120
            +H LS  +PFL+PLP+QD LHRAGGSPWGVAL+LVFLLY+IS+QS +H+R
Sbjct: 64  LVHCLSGSVPFLIPLPEQDSLHRAGGSPWGVALVLVFLLYMISYQSSFHER 114

[Close]

BLAST of Cla97C02G050010 vs. TrEMBL
Match: tr|A0A061GR99|A0A061GR99_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_040264 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.5e-32
Identity = 73/116 (62.93%), Postives = 89/116 (76.72%), Query Frame = 0


Query: 9   YYRYPYLEYLTLPPLQLCVFGMILLLVMAFSWYIFYDSFLEDFIFQLKLFLLTVPLLLXX 68
           YYR  +L+YL+LPPL LC F  IL  V+ FSWYI Y+S  EDFI QLK FL+  P++L  
Sbjct: 4   YYRDSFLDYLSLPPLHLCFFVSILFFVLGFSWYINYESMFEDFINQLKFFLMLSPVVLLL 63

Query: 69  XLHILSLGLPFLVPLPQQDYLHRAGGSPWGVALLLVFLLYVISHQSHYHQRWFPFG 125
            +H  S  +PFL+PLP+QD LHR GGSPWGVALLLVFLLY+IS+QS +H+RWFP G
Sbjct: 64  LIHCFSGSVPFLIPLPEQDSLHRTGGSPWGVALLLVFLLYMISYQSSFHERWFPLG 119

[Close]

BLAST of Cla97C02G050010 vs. TrEMBL
Match: tr|A0A1U8NAK9|A0A1U8NAK9_GOSHI (uncharacterized protein LOC107945445 OS=Gossypium hirsutum OX=3635 GN=LOC107945445 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 4.9e-31
Identity = 70/116 (60.34%), Postives = 90/116 (77.59%), Query Frame = 0


Query: 9   YYRYPYLEYLTLPPLQLCVFGMILLLVMAFSWYIFYDSFLEDFIFQLKLFLLTVPLLLXX 68
           YYR  Y++YL+LPPL LC F  IL  V+ FSWY+ Y+S LEDF+ QLK FL+  P++L  
Sbjct: 4   YYRDSYMDYLSLPPLHLCFFISILFFVLGFSWYLNYESVLEDFMNQLKFFLMLAPIVLLL 63

Query: 69  XLHILSLGLPFLVPLPQQDYLHRAGGSPWGVALLLVFLLYVISHQSHYHQRWFPFG 125
            LH  S  +P L+P P++D LHRAGGSPWGVAL+LV LLY+IS+QS++H+RWFPFG
Sbjct: 64  LLHCFSGRVPSLIPEPEKDSLHRAGGSPWGVALVLVLLLYMISYQSYFHERWFPFG 119

[Close]

BLAST of Cla97C02G050010 vs. TrEMBL
Match: tr|A0A0D2VJW7|A0A0D2VJW7_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G248300 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 4.9e-31
Identity = 70/116 (60.34%), Postives = 90/116 (77.59%), Query Frame = 0


Query: 9   YYRYPYLEYLTLPPLQLCVFGMILLLVMAFSWYIFYDSFLEDFIFQLKLFLLTVPLLLXX 68
           YYR  Y++YL+LPPL LC F  IL  V+ FSWY+ Y+S LEDF+ QLK FL+  P++L  
Sbjct: 4   YYRDSYMDYLSLPPLHLCFFISILFFVLGFSWYLNYESVLEDFMNQLKFFLMLAPIVLLL 63

Query: 69  XLHILSLGLPFLVPLPQQDYLHRAGGSPWGVALLLVFLLYVISHQSHYHQRWFPFG 125
            LH  S  +P L+P P++D LHRAGGSPWGVAL+LV LLY+IS+QS++H+RWFPFG
Sbjct: 64  LLHCFSGRVPSLIPEPEKDSLHRAGGSPWGVALVLVLLLYMISYQSYFHERWFPFG 119

[Close]

BLAST of Cla97C02G050010 vs. TrEMBL
Match: tr|A0A2P5SPS7|A0A2P5SPS7_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD01999 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 4.9e-31
Identity = 70/116 (60.34%), Postives = 90/116 (77.59%), Query Frame = 0


Query: 9   YYRYPYLEYLTLPPLQLCVFGMILLLVMAFSWYIFYDSFLEDFIFQLKLFLLTVPLLLXX 68
           YYR  Y++YL+LPPL LC F  IL  V+ FSWY+ Y+S LEDF+ QLK FL+  P++L  
Sbjct: 4   YYRDSYMDYLSLPPLHLCFFISILFFVLGFSWYLNYESVLEDFMNQLKFFLMLAPIVLLL 63

Query: 69  XLHILSLGLPFLVPLPQQDYLHRAGGSPWGVALLLVFLLYVISHQSHYHQRWFPFG 125
            LH  S  +P L+P P++D LHRAGGSPWGVAL+LV LLY+IS+QS++H+RWFPFG
Sbjct: 64  LLHCFSGRVPSLIPEPEKDSLHRAGGSPWGVALVLVLLLYMISYQSYFHERWFPFG 119

[Close]

BLAST of Cla97C02G050010 vs. TrEMBL
Match: tr|A0A2P5F6Z2|A0A2P5F6Z2_9ROSA (Transmembrane protein OS=Trema orientalis OX=63057 GN=TorRG33x02_105310 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.5e-29
Identity = 74/123 (60.16%), Postives = 93/123 (75.61%), Query Frame = 0


Query: 1   MARYNNYYYYRYPYLEYLTLPPLQLCVFGMILLLVMAFSWYIFYDSFLEDFIFQLKLFLL 60
           MARY N Y   Y Y +Y ++ PL LC F +IL  ++ FSWYI Y++  ED I Q+KLFL+
Sbjct: 1   MARYYNNY---YSYWDYFSI-PLHLCFFMLILFFMLGFSWYINYENKFEDLITQVKLFLM 60

Query: 61  TVPLLLXXXLHILSL-GLPFLVPLPQQDYLHRAGGSPWGVALLLVFLLYVISHQSHYHQR 120
            VPLLL   +H LS  G+PFL+PLP+QD LHRAGGSPWGV LLLVFLL++IS+QS +H+R
Sbjct: 61  IVPLLLLLVVHCLSSGGVPFLIPLPEQDSLHRAGGSPWGVGLLLVFLLFMISYQSSFHER 119

Query: 121 WFP 123
           WFP
Sbjct: 121 WFP 119

[Close]

BLAST of Cla97C02G050010 vs. TAIR10
Match: AT5G19875.1 (unknown protein)

HSP 1 Score: 114.4 bits (285), Expect = 5.1e-26
Identity = 55/116 (47.41%), Postives = 80/116 (68.97%), Query Frame = 0


Query: 9   YYRYPYLEYLTLPPLQLCVFGMILLLVMAFSWYIFYDSFLEDFIFQLKLFLLTVPLLLXX 68
           YY   YL+YL+LP   LC   +++  V++F+WY+ ++S +ED +  LKL  +  PL L  
Sbjct: 6   YYGSSYLDYLSLPNPHLCFLFIVVFFVLSFTWYLNFESIIEDTLDHLKLVFIFTPLFLLL 65

Query: 69  XLHILSLGLPFLVPLPQQDYLHRAGGSPWGVALLLVFLLYVISHQSHYHQRWFPFG 125
            +H  S GL F VP P+QD +HRAG SPWGVA +LV +L+++S+QS + +RWFPFG
Sbjct: 66  LVHFFSGGLSFYVPWPEQDSIHRAGSSPWGVAAVLVLILFMVSYQSDFQERWFPFG 121

[Close]

BLAST of Cla97C02G050010 vs. TAIR10
Match: AT2G31940.1 (unknown protein)

HSP 1 Score: 94.7 bits (234), Expect = 4.2e-20
Identity = 50/107 (46.73%), Postives = 73/107 (68.22%), Query Frame = 0


Query: 22  PLQLCVFGMILLLVMAFSWYIFYDSFLEDFIFQLKLFLLTVPLLLXXXLHILS----LG- 81
           PL LCVF +ILL+ +  SWY  Y+  +E F +Q KL L+  PLLL   +H LS    +G 
Sbjct: 12  PLHLCVFVLILLMFVTISWYASYEPVIEGFTYQFKLALMASPLLLLLAVHFLSDDQGVGG 71

Query: 82  -LPFLVPLPQQDYLHRAGGSPWGVALLLVFLLYVISHQSHYHQRWFP 123
            +  L+ L +++ L+RAGG+PWGVA +LVFL +++S+QS + +RWFP
Sbjct: 72  MMTSLIHLNERESLYRAGGTPWGVAFMLVFLFFMVSYQSQFQERWFP 118

The following BLAST results are available for this feature:

BLAST of Cla97C02G050010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022756288.1	6.1e-33	64.04	uncharacterized protein LOC111304026 [Durio zibethinus]	[more]
XP_007014761.1	2.3e-32	62.93	PREDICTED: uncharacterized protein LOC18589643 [Theobroma cacao] >EOY32380.1 Unc...	[more]
XP_021278994.1	5.2e-32	62.93	uncharacterized protein LOC110412707 [Herrania umbratica]	[more]
XP_012462541.1	7.4e-31	60.34	PREDICTED: uncharacterized protein LOC105782384 [Gossypium raimondii] >XP_016734...	[more]
XP_022731911.1	6.3e-30	63.06	uncharacterized protein LOC111286288 [Durio zibethinus]	[more]

BLAST of Cla97C02G050010 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A061GR99\|A0A061GR99_THECC	1.5e-32	62.93	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_040264 PE=4 SV=1	[more]
tr\|A0A1U8NAK9\|A0A1U8NAK9_GOSHI	4.9e-31	60.34	uncharacterized protein LOC107945445 OS=Gossypium hirsutum OX=3635 GN=LOC1079454...	[more]
tr\|A0A0D2VJW7\|A0A0D2VJW7_GOSRA	4.9e-31	60.34	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G248300 PE=4 ...	[more]
tr\|A0A2P5SPS7\|A0A2P5SPS7_GOSBA	4.9e-31	60.34	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD01999 PE=4 SV...	[more]
tr\|A0A2P5F6Z2\|A0A2P5F6Z2_9ROSA	3.5e-29	60.16	Transmembrane protein OS=Trema orientalis OX=63057 GN=TorRG33x02_105310 PE=4 SV=...	[more]

BLAST of Cla97C02G050010 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C02G050010 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G19875.1	5.1e-26	47.41	unknown protein	[more]
AT2G31940.1	4.2e-20	46.73	unknown protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006979	response to oxidative stress
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G050010.1	Cla97C02G050010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33306	FAMILY NOT NAMED	coord: 1..124
None	No IPR available	PANTHER	PTHR33306:SF10	SUBFAMILY NOT NAMED	coord: 1..124

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C02G050010	Cla003181	Watermelon (97103) v1	wmwmbB316
Cla97C02G050010	Csa4G280660	Cucumber (Chinese Long) v2	cuwmbB287
Cla97C02G050010	MELO3C014664	Melon (DHL92) v3.5.1	mewmbB377
Cla97C02G050010	ClCG02G023860	Watermelon (Charleston Gray)	wcgwmbB138
Cla97C02G050010	CSPI04G13170	Wild cucumber (PI 183967)	cpiwmbB294
Cla97C02G050010	Cucsa.153330	Cucumber (Gy14) v1	cgywmbB259
Cla97C02G050010	CmaCh20G000440	Cucurbita maxima (Rimu)	cmawmbB577
Cla97C02G050010	CmoCh20G000460	Cucurbita moschata (Rifu)	cmowmbB557
Cla97C02G050010	Lsi10G009850	Bottle gourd (USVL1VR-Ls)	lsiwmbB052
Cla97C02G050010	MELO3C014664.2	Melon (DHL92) v3.6.1	medwmbB368
Cla97C02G050010	Carg06937	Silver-seed gourd	carwmbB0543
Cla97C02G050010	Bhi10G000330	Wax gourd	wgowmbB353
Cla97C02G050010	Bhi09G000476	Wax gourd	wgowmbB567

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C02G050010	Cucurbita moschata (Rifu)	cmowmbB602
Cla97C02G050010	Cucumber (Chinese Long) v3	cucwmbB293
Cla97C02G050010	Silver-seed gourd	carwmbB0966
Cla97C02G050010	Cucumber (Gy14) v2	cgybwmbB273
Cla97C02G050010	Cucurbita maxima (Rimu)	cmawmbB629