Csa4G280660 (gene) Cucumber (Chinese Long) v2

NameCsa4G280660
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionOxidoreductase/ transition metal ion binding protein
LocationChr4 : 10961343 .. 10961748 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GATTGGGAAAATCTTTGGAGTGGGAAAGAGAATGGCAAGGTACAACTACTACTACCGCTATCCTTACTTGGAGTACTTGACATTGCCTCCTTTGCAGCTTTGTGTGTTTGTTGTGATCCTTTTGGTGGTGATGGCCTTTTCATGGTACTTCTTCTACTATTCATTTCTTGAAGATTTTATCTTCCAACTCAAGCTCTTCCTTCTCACTGTCCCCTTGCTTCTCCTCCTCCTCCTCCACCTCCTCTCTTTCGGCTTCTCCTTTCTCCTCCCTTTACCCGAGCAGGACTCCCTCCATCGTGCTGGTGGCTCACCCTGGGGCGTCGCCATCCTCCTCGTCTTCTTTCTCTATGTTATCTCTCACCAGTCTCATTACCACCAACGTTGGTTTCCTTTCGGATATAGATAA

mRNA sequence

ATGGCAAGGTACAACTACTACTACCGCTATCCTTACTTGGAGTACTTGACATTGCCTCCTTTGCAGCTTTGTGTGTTTGTTGTGATCCTTTTGGTGGTGATGGCCTTTTCATGGTACTTCTTCTACTATTCATTTCTTGAAGATTTTATCTTCCAACTCAAGCTCTTCCTTCTCACTGTCCCCTTGCTTCTCCTCCTCCTCCTCCACCTCCTCTCTTTCGGCTTCTCCTTTCTCCTCCCTTTACCCGAGCAGGACTCCCTCCATCGTGCTGGTGGCTCACCCTGGGGCGTCGCCATCCTCCTCGTCTTCTTTCTCTATGTTATCTCTCACCAGTCTCATTACCACCAACGTTGGTTTCCTTTCGGATATAGATAA

Coding sequence (CDS)

ATGGCAAGGTACAACTACTACTACCGCTATCCTTACTTGGAGTACTTGACATTGCCTCCTTTGCAGCTTTGTGTGTTTGTTGTGATCCTTTTGGTGGTGATGGCCTTTTCATGGTACTTCTTCTACTATTCATTTCTTGAAGATTTTATCTTCCAACTCAAGCTCTTCCTTCTCACTGTCCCCTTGCTTCTCCTCCTCCTCCTCCACCTCCTCTCTTTCGGCTTCTCCTTTCTCCTCCCTTTACCCGAGCAGGACTCCCTCCATCGTGCTGGTGGCTCACCCTGGGGCGTCGCCATCCTCCTCGTCTTCTTTCTCTATGTTATCTCTCACCAGTCTCATTACCACCAACGTTGGTTTCCTTTCGGATATAGATAA

Protein sequence

MARYNYYYRYPYLEYLTLPPLQLCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTVPLLLLLLLHLLSFGFSFLLPLPEQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRWFPFGYR*
BLAST of Csa4G280660 vs. TrEMBL
Match: A0A0A0KZ55_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G280660 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 3.0e-67
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1

Query: 1   MARYNYYYRYPYLEYLTLPPLQLCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTV 60
           MARYNYYYRYPYLEYLTLPPLQLCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTV
Sbjct: 1   MARYNYYYRYPYLEYLTLPPLQLCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTV 60

Query: 61  PLLLLLLLHLLSFGFSFLLPLPEQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRWFP 120
           PLLLLLLLHLLSFGFSFLLPLPEQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRWFP
Sbjct: 61  PLLLLLLLHLLSFGFSFLLPLPEQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRWFP 120

Query: 121 FGYR 125
           FGYR
Sbjct: 121 FGYR 124

BLAST of Csa4G280660 vs. TrEMBL
Match: A0A061GR99_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_040264 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.9e-37
Identity = 75/116 (64.66%), Postives = 89/116 (76.72%), Query Frame = 1

Query: 7   YYRYPYLEYLTLPPLQLCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTVPLLLLL 66
           YYR  +L+YL+LPPL LC FV IL  V+ FSWY  Y S  EDFI QLK FL+  P++LLL
Sbjct: 4   YYRDSFLDYLSLPPLHLCFFVSILFFVLGFSWYINYESMFEDFINQLKFFLMLSPVVLLL 63

Query: 67  LLHLLSFGFSFLLPLPEQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRWFPFG 123
           L+H  S    FL+PLPEQDSLHR GGSPWGVA+LLVF LY+IS+QS +H+RWFP G
Sbjct: 64  LIHCFSGSVPFLIPLPEQDSLHRTGGSPWGVALLLVFLLYMISYQSSFHERWFPLG 119

BLAST of Csa4G280660 vs. TrEMBL
Match: A0A0D2VJW7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G248300 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 3.6e-36
Identity = 72/116 (62.07%), Postives = 90/116 (77.59%), Query Frame = 1

Query: 7   YYRYPYLEYLTLPPLQLCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTVPLLLLL 66
           YYR  Y++YL+LPPL LC F+ IL  V+ FSWY  Y S LEDF+ QLK FL+  P++LLL
Sbjct: 4   YYRDSYMDYLSLPPLHLCFFISILFFVLGFSWYLNYESVLEDFMNQLKFFLMLAPIVLLL 63

Query: 67  LLHLLSFGFSFLLPLPEQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRWFPFG 123
           LLH  S     L+P PE+DSLHRAGGSPWGVA++LV  LY+IS+QS++H+RWFPFG
Sbjct: 64  LLHCFSGRVPSLIPEPEKDSLHRAGGSPWGVALVLVLLLYMISYQSYFHERWFPFG 119

BLAST of Csa4G280660 vs. TrEMBL
Match: A0A0L9UVE5_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g053900 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 8.2e-33
Identity = 74/127 (58.27%), Postives = 95/127 (74.80%), Query Frame = 1

Query: 1   MARYN--YYYRYPYLEYLTLPPLQLCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLL 60
           MARY+  YYY + YL +    PL L  FV+ILL V+AFSWY  Y S  ED + Q+K+FL 
Sbjct: 1   MARYHDQYYYWWEYLSF----PLHLVFFVIILLFVLAFSWYINYESLFEDLLVQVKIFLA 60

Query: 61  TVPLLLLLLLHLLSFGFSFLLPLPEQ-DSLHRAGGSPWGVAILLVFFLYVISHQSHYHQR 120
            VPLLLLL++H LS G SF +PLPE+ +SLHRAGGSPWGVA+LL+F L+++++QS +HQR
Sbjct: 61  LVPLLLLLVVHCLSSGASFPIPLPEERESLHRAGGSPWGVALLLLFVLFMMAYQSSFHQR 120

Query: 121 WFPFGYR 125
           WFP   R
Sbjct: 121 WFPLATR 123

BLAST of Csa4G280660 vs. TrEMBL
Match: A0A0S3RKH3_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G070000 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 8.2e-33
Identity = 74/127 (58.27%), Postives = 95/127 (74.80%), Query Frame = 1

Query: 1   MARYN--YYYRYPYLEYLTLPPLQLCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLL 60
           MARY+  YYY + YL +    PL L  FV+ILL V+AFSWY  Y S  ED + Q+K+FL 
Sbjct: 1   MARYHDQYYYWWEYLSF----PLHLVFFVIILLFVLAFSWYINYESLFEDLLVQVKIFLA 60

Query: 61  TVPLLLLLLLHLLSFGFSFLLPLPEQ-DSLHRAGGSPWGVAILLVFFLYVISHQSHYHQR 120
            VPLLLLL++H LS G SF +PLPE+ +SLHRAGGSPWGVA+LL+F L+++++QS +HQR
Sbjct: 61  LVPLLLLLVVHCLSSGASFPIPLPEERESLHRAGGSPWGVALLLLFVLFMMAYQSSFHQR 120

Query: 121 WFPFGYR 125
           WFP   R
Sbjct: 121 WFPLATR 123

BLAST of Csa4G280660 vs. TAIR10
Match: AT5G19875.1 (AT5G19875.1 unknown protein)

HSP 1 Score: 134.8 bits (338), Expect = 3.6e-32
Identity = 59/116 (50.86%), Postives = 79/116 (68.10%), Query Frame = 1

Query: 7   YYRYPYLEYLTLPPLQLCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTVPLLLLL 66
           YY   YL+YL+LP   LC   +++  V++F+WY  + S +ED +  LKL  +  PL LLL
Sbjct: 6   YYGSSYLDYLSLPNPHLCFLFIVVFFVLSFTWYLNFESIIEDTLDHLKLVFIFTPLFLLL 65

Query: 67  LLHLLSFGFSFLLPLPEQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRWFPFG 123
           L+H  S G SF +P PEQDS+HRAG SPWGVA +LV  L+++S+QS + +RWFPFG
Sbjct: 66  LVHFFSGGLSFYVPWPEQDSIHRAGSSPWGVAAVLVLILFMVSYQSDFQERWFPFG 121

BLAST of Csa4G280660 vs. TAIR10
Match: AT2G31940.1 (AT2G31940.1 unknown protein)

HSP 1 Score: 110.2 bits (274), Expect = 9.6e-25
Identity = 53/107 (49.53%), Postives = 71/107 (66.36%), Query Frame = 1

Query: 20  PLQLCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTVPLLLLLLLHLLSFG----- 79
           PL LCVFV+ILL+ +  SWY  Y   +E F +Q KL L+  PLLLLL +H LS       
Sbjct: 12  PLHLCVFVLILLMFVTISWYASYEPVIEGFTYQFKLALMASPLLLLLAVHFLSDDQGVGG 71

Query: 80  -FSFLLPLPEQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRWFP 121
             + L+ L E++SL+RAGG+PWGVA +LVF  +++S+QS + +RWFP
Sbjct: 72  MMTSLIHLNERESLYRAGGTPWGVAFMLVFLFFMVSYQSQFQERWFP 118

BLAST of Csa4G280660 vs. TAIR10
Match: AT5G42146.1 (AT5G42146.1 unknown protein)

HSP 1 Score: 67.0 bits (162), Expect = 9.3e-12
Identity = 36/108 (33.33%), Postives = 57/108 (52.78%), Query Frame = 1

Query: 19  PPLQLCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTVPLLLLLLL------HLLS 78
           PPL L   + I+ +++  S Y  Y   +E     LKLF+L +P+L + +L      H L 
Sbjct: 28  PPLTLLALLAIISLLLFLSSYPRYKYEVEKTAANLKLFMLFLPILFVFVLVSLSFVHRLL 87

Query: 79  FGFSFLLPLPEQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRWFP 121
           F  S+ +   +  SL   G  PWGV ++L+  L ++S QS++H  W+P
Sbjct: 88  FKSSYSVRANQAKSLFGEGNFPWGVLLMLILLLLLVSKQSYFHSLWYP 135

BLAST of Csa4G280660 vs. TAIR10
Match: AT2G21180.1 (AT2G21180.1 unknown protein)

HSP 1 Score: 51.2 bits (121), Expect = 5.3e-07
Identity = 36/123 (29.27%), Postives = 53/123 (43.09%), Query Frame = 1

Query: 9   RYPYLEYLTLPPLQLCVFVVILL--VVMAFSWYFFYYSFLEDFIFQLKLFLLTVPLLLLL 68
           R   L+  +L PL   V +++ +  V +  SWYF      E    Q+   LL +PL L++
Sbjct: 7   RSSILDSFSLSPLPYPVLLILAVASVFLLSSWYFSLEEAAESAEEQINFALLLIPLFLIV 66

Query: 69  LLHLLS-----------FGFSFLLPLPEQDSLHRAGGSPWGVAILLVFFLYVISHQSHYH 119
           L+  LS           F  S         +    G SPWGVA L+V  L ++ +QS + 
Sbjct: 67  LVRWLSSMENPDALLGMFSSSRRTTYVSPGAGGDGGSSPWGVAALIVLLLVLLQYQSSFL 126

BLAST of Csa4G280660 vs. NCBI nr
Match: gi|700198931|gb|KGN54089.1| (hypothetical protein Csa_4G280660 [Cucumis sativus])

HSP 1 Score: 262.3 bits (669), Expect = 4.3e-67
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1

Query: 1   MARYNYYYRYPYLEYLTLPPLQLCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTV 60
           MARYNYYYRYPYLEYLTLPPLQLCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTV
Sbjct: 1   MARYNYYYRYPYLEYLTLPPLQLCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTV 60

Query: 61  PLLLLLLLHLLSFGFSFLLPLPEQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRWFP 120
           PLLLLLLLHLLSFGFSFLLPLPEQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRWFP
Sbjct: 61  PLLLLLLLHLLSFGFSFLLPLPEQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRWFP 120

Query: 121 FGYR 125
           FGYR
Sbjct: 121 FGYR 124

BLAST of Csa4G280660 vs. NCBI nr
Match: gi|590582936|ref|XP_007014761.1| (Uncharacterized protein TCM_040264 [Theobroma cacao])

HSP 1 Score: 163.3 bits (412), Expect = 2.7e-37
Identity = 75/116 (64.66%), Postives = 89/116 (76.72%), Query Frame = 1

Query: 7   YYRYPYLEYLTLPPLQLCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTVPLLLLL 66
           YYR  +L+YL+LPPL LC FV IL  V+ FSWY  Y S  EDFI QLK FL+  P++LLL
Sbjct: 4   YYRDSFLDYLSLPPLHLCFFVSILFFVLGFSWYINYESMFEDFINQLKFFLMLSPVVLLL 63

Query: 67  LLHLLSFGFSFLLPLPEQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRWFPFG 123
           L+H  S    FL+PLPEQDSLHR GGSPWGVA+LLVF LY+IS+QS +H+RWFP G
Sbjct: 64  LIHCFSGSVPFLIPLPEQDSLHRTGGSPWGVALLLVFLLYMISYQSSFHERWFPLG 119

BLAST of Csa4G280660 vs. NCBI nr
Match: gi|823259654|ref|XP_012462541.1| (PREDICTED: uncharacterized protein LOC105782384 [Gossypium raimondii])

HSP 1 Score: 159.1 bits (401), Expect = 5.1e-36
Identity = 72/116 (62.07%), Postives = 90/116 (77.59%), Query Frame = 1

Query: 7   YYRYPYLEYLTLPPLQLCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTVPLLLLL 66
           YYR  Y++YL+LPPL LC F+ IL  V+ FSWY  Y S LEDF+ QLK FL+  P++LLL
Sbjct: 4   YYRDSYMDYLSLPPLHLCFFISILFFVLGFSWYLNYESVLEDFMNQLKFFLMLAPIVLLL 63

Query: 67  LLHLLSFGFSFLLPLPEQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRWFPFG 123
           LLH  S     L+P PE+DSLHRAGGSPWGVA++LV  LY+IS+QS++H+RWFPFG
Sbjct: 64  LLHCFSGRVPSLIPEPEKDSLHRAGGSPWGVALVLVLLLYMISYQSYFHERWFPFG 119

BLAST of Csa4G280660 vs. NCBI nr
Match: gi|920703610|gb|KOM46835.1| (hypothetical protein LR48_Vigan07g053900 [Vigna angularis])

HSP 1 Score: 147.9 bits (372), Expect = 1.2e-32
Identity = 74/127 (58.27%), Postives = 95/127 (74.80%), Query Frame = 1

Query: 1   MARYN--YYYRYPYLEYLTLPPLQLCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLL 60
           MARY+  YYY + YL +    PL L  FV+ILL V+AFSWY  Y S  ED + Q+K+FL 
Sbjct: 1   MARYHDQYYYWWEYLSF----PLHLVFFVIILLFVLAFSWYINYESLFEDLLVQVKIFLA 60

Query: 61  TVPLLLLLLLHLLSFGFSFLLPLPEQ-DSLHRAGGSPWGVAILLVFFLYVISHQSHYHQR 120
            VPLLLLL++H LS G SF +PLPE+ +SLHRAGGSPWGVA+LL+F L+++++QS +HQR
Sbjct: 61  LVPLLLLLVVHCLSSGASFPIPLPEERESLHRAGGSPWGVALLLLFVLFMMAYQSSFHQR 120

Query: 121 WFPFGYR 125
           WFP   R
Sbjct: 121 WFPLATR 123

BLAST of Csa4G280660 vs. NCBI nr
Match: gi|763754500|gb|KJB21831.1| (hypothetical protein B456_004G017800 [Gossypium raimondii])

HSP 1 Score: 147.9 bits (372), Expect = 1.2e-32
Identity = 69/125 (55.20%), Postives = 92/125 (73.60%), Query Frame = 1

Query: 1   MARYNYYYRYPYLEYLTLPPLQLCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLLTV 60
           MAR   Y  Y +++ L+ PPL LC F++IL  ++  SWY  Y S LED   QLKLFLL V
Sbjct: 1   MARNYNYSSYSFIDDLSPPPLHLCFFIIILFFMLGLSWYINYESKLEDLTIQLKLFLLLV 60

Query: 61  PLLLLLLLHLLSF-GFSFLLPLPEQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRWF 120
           P++LLLL+H LS     F++P  +QDSLHRAGGSPWGVA++LV  +Y+IS+QS++H+RWF
Sbjct: 61  PVVLLLLVHCLSAESLDFVVPFTDQDSLHRAGGSPWGVALVLVVVIYMISYQSYFHERWF 120

Query: 121 PFGYR 125
           PFG +
Sbjct: 121 PFGIK 125

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KZ55_CUCSA3.0e-67100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G280660 PE=4 SV=1[more]
A0A061GR99_THECC1.9e-3764.66Uncharacterized protein OS=Theobroma cacao GN=TCM_040264 PE=4 SV=1[more]
A0A0D2VJW7_GOSRA3.6e-3662.07Uncharacterized protein OS=Gossypium raimondii GN=B456_013G248300 PE=4 SV=1[more]
A0A0L9UVE5_PHAAN8.2e-3358.27Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g053900 PE=4 SV=1[more]
A0A0S3RKH3_PHAAN8.2e-3358.27Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G070000 PE=... [more]
Match NameE-valueIdentityDescription
AT5G19875.13.6e-3250.86 unknown protein[more]
AT2G31940.19.6e-2549.53 unknown protein[more]
AT5G42146.19.3e-1233.33 unknown protein[more]
AT2G21180.15.3e-0729.27 unknown protein[more]
Match NameE-valueIdentityDescription
gi|700198931|gb|KGN54089.1|4.3e-67100.00hypothetical protein Csa_4G280660 [Cucumis sativus][more]
gi|590582936|ref|XP_007014761.1|2.7e-3764.66Uncharacterized protein TCM_040264 [Theobroma cacao][more]
gi|823259654|ref|XP_012462541.1|5.1e-3662.07PREDICTED: uncharacterized protein LOC105782384 [Gossypium raimondii][more]
gi|920703610|gb|KOM46835.1|1.2e-3258.27hypothetical protein LR48_Vigan07g053900 [Vigna angularis][more]
gi|763754500|gb|KJB21831.1|1.2e-3255.20hypothetical protein B456_004G017800 [Gossypium raimondii][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006979 response to oxidative stress
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G280660.1Csa4G280660.1mRNA


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33306FAMILY NOT NAMEDcoord: 1..124
score: 4.8
NoneNo IPR availablePANTHERPTHR33306:SF3SUBFAMILY NOT NAMEDcoord: 1..124
score: 4.8