Cucsa.151960 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.151960
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Structure-specific endonuclease subunit SLX1 homolog
Location	scaffold01119 : 274390 .. 276944 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAGAGAGAGAGAGATGCGGAAGAGGAAAGAGAAACCGGAAATCTGTAAAACCACGGATGAGGAGAAGGAAGACGATGAAGAAGAAGAGAGAGGAAaCGAAGTGAATGGCTTCTTTtCATGCTATCTCTTGGCCTCTGCTTGCCCTCGTTTCAaaGGCCATACCTATATCGGGTTTGAAACTTTCCCACTCCATTTTTAGCTCCTTGCTTCCCTACATCGGACCTTCTATTTGCTTTCTAAATTCCCAATTTTCGAATTTCTTTACCATCTTTGATTCGGTTCTTTTGTAAAGATTGAGTGAGGGAAAACATAAAGAAATGTTGGTGAGTCGATCTGATCTGCTGGGTATTGATTTGTTGACTGTTTATATGAAATTTTAGATTCACAGTGAACCCGAAGCGCAGAATCAGACAACACAATGGTGAGATTAGATGCGGTGCTTGGCGTACTAAGAGGAAGAGACCTTGGGAGATGGTCTTGTGCATTTATGGCTTCCCTACTAATGTTTCTGCTCTTCAGGTTACATTTCCTGACTTTCAGCTCTAAACTAGTTTGATTCTGCGTTTTTTCTACTTGATTCTCTTTTACTAGCTGAATGAATGACACTTCGATGATTATGCAAATGTTGAGATGTTAGATTAAAAGAAGAAAAAAaGCAGATTCTCTTTCAGAACTCATTTTTTTtATCATAAGAAATAGTGGCTTGCATATTAGGGATTTTATGGCTTAAAGAATATACCAAAATTTGTTGCTGCTTTAATTTTCTTCTTTAGCCGTTTACTTTCTTGTAAGTTTCCATCAGTTCTAGAATTTGATTTTCTAAACTGTGGGTACAGTTTGAATGGGCGTGGCAGCATCCTAATGAGTCACTGGCTGTAAGAAGTGCTGCTGCAACTTTCAAGTCTCTCTCTGGAGTTGCTAACAAAGTTAAACTTGCATACACAATGCTCACACTTCCTGCTTGGCGTGGGTATGACATTTGAAAAAATTTATACAATCTTGTCGAATTTGTCTGTTAAATATGCGAGAAGCGTGAAGAGAAACCTAAAAATAATGAAAATATCCATCAACATGTATTGAAAGGTTTGACATTGATATTAAATATTATTGAACATCTCCAATATCTTCTATAAATGCTTGTAAACATCAAATCTTCAAATCGATGTGGACATGAGTATTTTAATCCTTGGATAATCCTCCATATCAGCAAGAAAAGGGAAAGATTTATAGTATCTCAATAAAGACAACAATCTTATAACTGTCTTGTTTTTGGGGCAAAACCAAAGTTTGAGAGTGAAAAGGGCGATATCTTATTACTGTGATTTATGAAGGAGCAACAAACTGATGTAATTTCAATCAATTTTGTCTGGCAATCTCTTTATTCACTTATTTCTCCTTATCCTTGCAGTTTAAATATAACTGTAAACTACTTCTCTACAAAGTTCATGAAGAATGCGGCTGGTTGCCCAAGTTTGCCAGAGCATATGAAGGTCCAAGTTTCCCCCATCAATGAGCTTCCATGCTATTCCGAAGGAGATCAAGATATGCTTGAAAATGAAGGTGACTGGGAGTATAATCGAGAACGTGAAGAAATTTGTGGTTTTCGAGTGTATGGATCAATGAAAGAAGTTTCAAATGAAGTTCCTCAAAAGTTAATGGATTATCAGACAGGTACAGATGGAAGACCTCCTCACGTGTTGCGTGGATGTGATAAGGAGCTTGAGACCAATGAACAAGTGCCACCTTCTTCATGTACTCCGTCTTATATTGATGTGGGTATGTCTTATGACTTGTGTGCATGTGATGAAGGACTCGAGAATGATGAAAGAGAGGCAGCTTCGTGTGGTCAGTCTTGCATTGTAGCAGGTACATCTAGAACTGAAATTGTCATTGATGACGAAGAGGAAAACCAATTAGAAGGGAGTAGTATGAACTTGCAGGAGCAACCAGGTAGGGAGAATTTAACATCAGGAATAGCTTCTGAAATCAGTAAAGTTTCAAGGTGGAACAATGGCTGGGTTCCAACTGTTGAGTATGAGGTTATCGATGTGTCTACCCCGTCTCCAGACTGCCGAACAAGTTCGCATAGATTCAAGAGAAGAGTTACTTCCGGTAAGTCTGAGATGATTGACTTGACTAAATCTCCTACATTTATTCAATTGTAGAAGGATGGATGGATTTGGATTATTGTGCATATAGGAGATATGGAATGAGTTTTCATGAGAAGTTTCATTTTTGCAATGAAGAGGTAGTATTACTATAACAGATAGCATCTTCTCAACCCTTTTCAGAGATAACGTGGGCTCAACTATGGTTGACTAGACCAAATAAGAGGGGAACATGTTGTCAAGTTATATATAATAATTATAATAACAGCCTCTCTTGCAAAGGCATCATTTTAAAGGGGAATCTAAGTCTGAAAAATAACATTGAATCGGTTGTGGTATCAATTAATTTGTTTCAAACGACCGGGATCAATGTTGAACTATGCAACTACACCTTGGTTACATATCCATCTATACTACTATATATGGATGGAGTGTAGATGAGAGA

mRNA sequence

GAGAGAGAGAGAGAGATGCGGAAGAGGAAAGAGAAACCGGAAATCTGTAAAACCACGGATGAGGAGAAGGAAGACGATGAAGAAGAAGAGAGAGGAAACGAAGTGAATGGCTTCTTTTCATGCTATCTCTTGGCCTCTGCTTGCCCTCGTTTCAAAGGCCATACCTATATCGGATTCACAGTGAACCCGAAGCGCAGAATCAGACAACACAATGGTGAGATTAGATGCGGTGCTTGGCGTACTAAGAGGAAGAGACCTTGGGAGATGGTCTTGTGCATTTATGGCTTCCCTACTAATGTTTCTGCTCTTCAGTTTGAATGGGCGTGGCAGCATCCTAATGAGTCACTGGCTGTAAGAAGTGCTGCTGCAACTTTCAAGTCTCTCTCTGGAGTTGCTAACAAAGTTAAACTTGCATACACAATGCTCACACTTCCTGCTTGGCGTGGTTTAAATATAACTGTAAACTACTTCTCTACAAAGTTCATGAAGAATGCGGCTGGTTGCCCAAGTTTGCCAGAGCATATGAAGGTCCAAGTTTCCCCCATCAATGAGCTTCCATGCTATTCCGAAGGAGATCAAGATATGCTTGAAAATGAAGGTGACTGGGAGTATAATCGAGAACGTGAAGAAATTTGTGGTTTTCGAGTGTATGGATCAATGAAAGAAGTTTCAAATGAAGTTCCTCAAAAGTTAATGGATTATCAGACAGGTACAGATGGAAGACCTCCTCACGTGTTGCGTGGATGTGATAAGGAGCTTGAGACCAATGAACAAGTGCCACCTTCTTCATGTACTCCGTCTTATATTGATGTGGGTATGTCTTATGACTTGTGTGCATGTGATGAAGGACTCGAGAATGATGAAAGAGAGGCAGCTTCGTGTGGTCAGTCTTGCATTGTAGCAGGTACATCTAGAACTGAAATTGTCATTGATGACGAAGAGGAAAACCAATTAGAAGGGAGTAGTATGAACTTGCAGGAGCAACCAGGTAGGGAGAATTTAACATCAGGAATAGCTTCTGAAATCAGTAAAGTTTCAAGGTGGAACAATGGCTGGGTTCCAACTGTTGAGTATGAGGTTATCGATGTGTCTACCCCGTCTCCAGACTGCCGAACAAGTTCGCATAGATTCAAGAGAAGAGTTACTTCCGGTAAGTCTGAGATGATTGACTTGACTAAATCTCCTACATTTATTCAATTGTAGAAGGATGGATGGATTTGGATTATTGTGCATATAGGAGATATGGAATGAGTTTTCATGAGAAGTTTCATTTTTGCAATGAAGAGGTAGTATTACTATAACAGATAGCATCTTCTCAACCCTTTTCAGAGATAACGTGGGCTCAACTATGGTTGACTAGACCAAATAAGAGGGGAACATGTTGTCAAGttatatataataattataataaCAGCCTCTCTTGCAAAGGCATCATTTTAAAGGGGAATCTAAGTCTGAAAAATAACATTGAATCGGTTGTGGTATCAATTAATTTGTTTCAAACGACCGGGATCAATGTTGAACTATGCAACTACACCTTGGTTACATATCCATCTATACTACTATATATGGATGGAGTGTAGATGAGAGA

Coding sequence (CDS)

ATGCGGAAGAGGAAAGAGAAACCGGAAATCTGTAAAACCACGGATGAGGAGAAGGAAGACGATGAAGAAGAAGAGAGAGGAAaCGAAGTGAATGGCTTCTTTtCATGCTATCTCTTGGCCTCTGCTTGCCCTCGTTTCAaaGGCCATACCTATATCGGATTCACAGTGAACCCGAAGCGCAGAATCAGACAACACAATGGTGAGATTAGATGCGGTGCTTGGCGTACTAAGAGGAAGAGACCTTGGGAGATGGTCTTGTGCATTTATGGCTTCCCTACTAATGTTTCTGCTCTTCAGTTTGAATGGGCGTGGCAGCATCCTAATGAGTCACTGGCTGTAAGAAGTGCTGCTGCAACTTTCAAGTCTCTCTCTGGAGTTGCTAACAAAGTTAAACTTGCATACACAATGCTCACACTTCCTGCTTGGCGTGGTTTAAATATAACTGTAAACTACTTCTCTACAAAGTTCATGAAGAATGCGGCTGGTTGCCCAAGTTTGCCAGAGCATATGAAGGTCCAAGTTTCCCCCATCAATGAGCTTCCATGCTATTCCGAAGGAGATCAAGATATGCTTGAAAATGAAGGTGACTGGGAGTATAATCGAGAACGTGAAGAAATTTGTGGTTTTCGAGTGTATGGATCAATGAAAGAAGTTTCAAATGAAGTTCCTCAAAAGTTAATGGATTATCAGACAGGTACAGATGGAAGACCTCCTCACGTGTTGCGTGGATGTGATAAGGAGCTTGAGACCAATGAACAAGTGCCACCTTCTTCATGTACTCCGTCTTATATTGATGTGGGTATGTCTTATGACTTGTGTGCATGTGATGAAGGACTCGAGAATGATGAAAGAGAGGCAGCTTCGTGTGGTCAGTCTTGCATTGTAGCAGGTACATCTAGAACTGAAATTGTCATTGATGACGAAGAGGAAAACCAATTAGAAGGGAGTAGTATGAACTTGCAGGAGCAACCAGGTAGGGAGAATTTAACATCAGGAATAGCTTCTGAAATCAGTAAAGTTTCAAGGTGGAACAATGGCTGGGTTCCAACTGTTGAGTATGAGGTTATCGATGTGTCTACCCCGTCTCCAGACTGCCGAACAAGTTCGCATAGATTCAAGAGAAGAGTTACTTCCGGTAAGTCTGAGATGATTGACTTGACTAAATCTCCTACATTTATTCAATTGTAG

Protein sequence

MRKRKEKPEICKTTDEEKEDDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCIVAGTSRTEIVIDDEEENQLEGSSMNLQEQPGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL*

Homology

[Close]

BLAST of Cucsa.151960 vs. Swiss-Prot
Match: SLX1_MOUSE (Structure-specific endonuclease subunit SLX1 OS=Mus musculus GN=Slx1b PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.3e-29
Identity = 67/164 (40.85%), Postives = 92/164 (56.10%), Query Frame = 1


Query: 33  FFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGF 92
           FF  YLL    PR +G  Y+GFTVNP RR+RQHN G  + GAWRT  + PW+MVL I+GF
Sbjct: 10  FFGVYLLYCQNPRHRGRVYVGFTVNPARRVRQHNAGRKKGGAWRTSGRGPWDMVLIIHGF 69

Query: 93  PTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNY 152
           P+ V+AL+FEWAWQHP  S  +       +S +  A  +++   ML +P W  L +T+ +
Sbjct: 70  PSAVAALRFEWAWQHPQASRRLTHVGPRLRSEAAFAFHLRVLAHMLRVPPWVRLPLTLRW 129

Query: 153 FSTKFMKNAAGCPSLPEHMKVQVSP------INELPCYSEGDQD 190
               F      CP+ P HM +   P      + + P  SE D +
Sbjct: 130 LRPDFRHEL--CPAPPAHMPIAFGPPPPQPLVPKRPAVSEADSE 171

[Close]

BLAST of Cucsa.151960 vs. Swiss-Prot
Match: SLX1_RAT (Structure-specific endonuclease subunit SLX1 OS=Rattus norvegicus GN=Slx1b PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.6e-29
Identity = 66/164 (40.24%), Postives = 91/164 (55.49%), Query Frame = 1


Query: 33  FFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGF 92
           FF  YLL    PR +G  Y+GFTVNP RR+RQHN G  + GAWRT  + PW+MVL ++GF
Sbjct: 10  FFGVYLLYCQNPRHRGRVYVGFTVNPARRVRQHNAGRKKGGAWRTSGRGPWDMVLILHGF 69

Query: 93  PTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNY 152
           P+ V+AL+FEWAWQHP  S  +       +S +     +++   ML +P W  L +TV +
Sbjct: 70  PSAVAALRFEWAWQHPQASRRLTHVGPRLRSEASFTFHLRVLAHMLRVPPWVRLPLTVRW 129

Query: 153 FSTKFMKNAAGCPSLPEHMKVQVSP------INELPCYSEGDQD 190
               F      CP+ P HM +   P      + + P  SE D +
Sbjct: 130 LRPDFRHEL--CPAPPPHMPIAFGPPPPQPLVPKRPAASEADSE 171

[Close]

BLAST of Cucsa.151960 vs. Swiss-Prot
Match: SLX1_BOVIN (Structure-specific endonuclease subunit SLX1 OS=Bos taurus GN=SLX1A PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.6e-27
Identity = 61/145 (42.07%), Postives = 84/145 (57.93%), Query Frame = 1


Query: 33  FFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNG-EIRCGAWRTKRKRPWEMVLCIYGF 92
           FF  YLL    PR +G  Y+GFTVNP RR++QHNG   + GAWRT  + PWEMVL ++GF
Sbjct: 6   FFGVYLLYCLNPRHRGRVYVGFTVNPARRVQQHNGGRKKGGAWRTSGRGPWEMVLIVHGF 65

Query: 93  PTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNY 152
           P+ V+AL+FEWAWQHP  S  +       +  +  A  +++   ML  P W  L +T+ +
Sbjct: 66  PSAVAALRFEWAWQHPQASRRLTHVGRRLRGEATFAFHLRVLAHMLRAPPWVRLPLTLRW 125

Query: 153 FSTKFMKNAAGCPSLPEHMKVQVSP 177
               F ++   CP  P HM +   P
Sbjct: 126 LRADFRQDL--CPPPPPHMPLAFGP 148

[Close]

BLAST of Cucsa.151960 vs. Swiss-Prot
Match: SLX1_XENLA (Structure-specific endonuclease subunit slx1 OS=Xenopus laevis GN=slx1a PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.1e-26
Identity = 59/154 (38.31%), Postives = 88/154 (57.14%), Query Frame = 1


Query: 29  EVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNG-EIRCGAWRTKRKRPWEMVLC 88
           EV GF+  YLL    P++KG  YIGFTVNP+RRI+QHNG + + GAW+T  + PW+MVL 
Sbjct: 4   EVEGFYGVYLLFCTNPKYKGRIYIGFTVNPERRIQQHNGGKHKGGAWKTSGRGPWDMVLI 63

Query: 89  IYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNI 148
           ++GFP +++AL+FEWAWQHP+ S  +       K  S     + +   ML +  W  L +
Sbjct: 64  VHGFPNDIAALRFEWAWQHPHVSRRLTHVPRKTKKQSSFDFHLLVLCHMLRVAPWNRLPL 123

Query: 149 TVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELP 182
           T+ +   ++ +        P HM +    +   P
Sbjct: 124 TLRWLRQEYRRELPLLLQPPLHMPLAFGQVRARP 157

[Close]

BLAST of Cucsa.151960 vs. Swiss-Prot
Match: SLX1_NEMVE (Structure-specific endonuclease subunit SLX1 homolog OS=Nematostella vectensis GN=v1g174298 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 6.8e-26
Identity = 61/149 (40.94%), Postives = 87/149 (58.39%), Query Frame = 1


Query: 31  NGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEI-RCGAWRTKRKRPWEMVLCIY 90
           +GF   YLL    P+FKGHTYIG+TVNP RRI+QHNG + + GA++T RK+PW M+L ++
Sbjct: 8   SGFHGVYLLYCVNPKFKGHTYIGYTVNPNRRIKQHNGGVDKGGAYKTSRKKPWNMILIVH 67

Query: 91  GFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLS-GVANKVKLAYTMLTLPAWRGLNIT 150
           GFP ++ ALQFEWAWQ P  S  ++SAA   K     V    ++   +L +  W  L + 
Sbjct: 68  GFPNDIIALQFEWAWQKPTVSRRLKSAATKKKPRERPVQYCFRILSELLRVGPWNRLPLH 127

Query: 151 VNYFSTKFMKNAAGCPSLPEHMKVQVSPI 178
           + +   ++          P HM V   P+
Sbjct: 128 IRWLMREYEMEFDPRCLPPFHMTVVYGPL 156

[Close]

BLAST of Cucsa.151960 vs. TrEMBL
Match: A0A0A0M0Y6_CUCSA (Structure-specific endonuclease subunit SLX1 homolog OS=Cucumis sativus GN=Csa_1G533630 PE=3 SV=1)

HSP 1 Score: 825.1 bits (2130), Expect = 3.7e-236
Identity = 395/395 (100.00%), Postives = 395/395 (100.00%), Query Frame = 1


Query: 1   MRKRKEKPEICKTTDEEKEDDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKR 60
           MRKRKEKPEICKTTDEEKEDDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKR
Sbjct: 1   MRKRKEKPEICKTTDEEKEDDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKR 60

Query: 61  RIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATF 120
           RIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATF
Sbjct: 61  RIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATF 120

Query: 121 KSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINEL 180
           KSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINEL
Sbjct: 121 KSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINEL 180

Query: 181 PCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGRPPHV 240
           PCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGRPPHV
Sbjct: 181 PCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGRPPHV 240

Query: 241 LRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCIVAGTSR 300
           LRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCIVAGTSR
Sbjct: 241 LRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCIVAGTSR 300

Query: 301 TEIVIDDEEENQLEGSSMNLQEQPGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVST 360
           TEIVIDDEEENQLEGSSMNLQEQPGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVST
Sbjct: 301 TEIVIDDEEENQLEGSSMNLQEQPGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVST 360

Query: 361 PSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL 396
           PSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL
Sbjct: 361 PSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL 395

[Close]

BLAST of Cucsa.151960 vs. TrEMBL
Match: A0A0B2SHX4_GLYSO (Structure-specific endonuclease subunit SLX1 homolog OS=Glycine soja GN=glysoja_047464 PE=3 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 2.0e-88
Identity = 194/403 (48.14%), Postives = 251/403 (62.28%), Query Frame = 1


Query: 1   MRKRKEKPEICKTTDEEKE------DDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGF 60
           MRKRK    +    +EE+       +++ E    E NGFF+CYLL S  PRFKGHTYIGF
Sbjct: 1   MRKRK----VASVIEEEESVQNHGHNNQNENEDCEGNGFFACYLLTSLSPRFKGHTYIGF 60

Query: 61  TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVR 120
           TVNP+RRIRQHNGEI CGAWRTK++RPWEMVLCIYGFPTNVSALQFEWAWQHP ESLAVR
Sbjct: 61  TVNPRRRIRQHNGEIGCGAWRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPVESLAVR 120

Query: 121 SAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMKVQV 180
            AA  FKSLSG+ANK+KLAYTMLTLP+W+ +NITVN+FSTK+MK+ AGCPSLP HMK + 
Sbjct: 121 KAAVEFKSLSGIANKIKLAYTMLTLPSWQSMNITVNFFSTKYMKHCAGCPSLPVHMKTKF 180

Query: 181 SPINELPCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTD 240
             ++ELPCY++G   + ENE D   +  + +       GS+ +VS+++       Q   D
Sbjct: 181 GSLDELPCYNKGIDGLSENEDD-TIDEVQFDDNNISTSGSVPDVSDDLVTP-DSPQNPND 240

Query: 241 GRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCI 300
           G         +KE E  E  PP         +G S+   A  E  +          +S  
Sbjct: 241 GDKISEAFEWNKESEARE--PP---------LGNSF---ASQEQSQLFSSTTPLTMKSSS 300

Query: 301 VAGTSRTEIVIDDEEENQLEGSSMNL-QEQPGRENLTSGIASEISKVSRWNNGWVPTVEY 360
                R EI+ +D+  + +  S  +L Q +P +   T+ +A++   V R    +V   E 
Sbjct: 301 TTSLQRAEIIEEDDFMSVMNKSDADLSQPEPEQSGATTLVANKNRDVGR---TFVVPHET 360

Query: 361 EVIDVSTPSPDCRTSSHRFKRRVTSG-KSEMIDLTKSPTFIQL 396
           E+ID+STPSP CR+   R KRRV+S   ++ IDLT SP FI+L
Sbjct: 361 EIIDLSTPSPSCRSVLDRKKRRVSSSVGTDFIDLTNSPNFIEL 380

[Close]

BLAST of Cucsa.151960 vs. TrEMBL
Match: I1LLV5_SOYBN (Structure-specific endonuclease subunit SLX1 homolog OS=Glycine max GN=GLYMA_11G161200 PE=3 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 2.0e-88
Identity = 194/403 (48.14%), Postives = 251/403 (62.28%), Query Frame = 1


Query: 1   MRKRKEKPEICKTTDEEKE------DDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGF 60
           MRKRK    +    +EE+       +++ E    E NGFF+CYLL S  PRFKGHTYIGF
Sbjct: 1   MRKRK----VASVIEEEESVQNHGHNNQNENEDCEGNGFFACYLLTSLSPRFKGHTYIGF 60

Query: 61  TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVR 120
           TVNP+RRIRQHNGEI CGAWRTK++RPWEMVLCIYGFPTNVSALQFEWAWQHP ESLAVR
Sbjct: 61  TVNPRRRIRQHNGEIGCGAWRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPVESLAVR 120

Query: 121 SAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMKVQV 180
            AA  FKSLSG+ANK+KLAYTMLTLP+W+ +NITVN+FSTK+MK+ AGCPSLP HMK + 
Sbjct: 121 KAAVEFKSLSGIANKIKLAYTMLTLPSWQSMNITVNFFSTKYMKHCAGCPSLPVHMKTKF 180

Query: 181 SPINELPCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTD 240
             ++ELPCY++G   + ENE D   +  + +       GS+ +VS+++       Q   D
Sbjct: 181 GSLDELPCYNKGIDGLSENEDD-TIDEVQFDDNNISTSGSVPDVSDDLVTP-DSPQNPND 240

Query: 241 GRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCI 300
           G         +KE E  E  PP         +G S+   A  E  +          +S  
Sbjct: 241 GDKISEAFEWNKESEARE--PP---------LGNSF---ASQEQSQLFSSTTPLTMKSSS 300

Query: 301 VAGTSRTEIVIDDEEENQLEGSSMNL-QEQPGRENLTSGIASEISKVSRWNNGWVPTVEY 360
                R EI+ +D+  + +  S  +L Q +P +   T+ +A++   V R    +V   E 
Sbjct: 301 TTSLQRAEIIEEDDFMSVMNKSDADLSQPEPEQSGATTLVANKNRDVGR---TFVVPHET 360

Query: 361 EVIDVSTPSPDCRTSSHRFKRRVTSG-KSEMIDLTKSPTFIQL 396
           E+ID+STPSP CR+   R KRRV+S   ++ IDLT SP FI+L
Sbjct: 361 EIIDLSTPSPSCRSVLDRKKRRVSSSVGTDFIDLTNSPNFIEL 380

[Close]

BLAST of Cucsa.151960 vs. TrEMBL
Match: I1MZS6_SOYBN (Structure-specific endonuclease subunit SLX1 homolog OS=Glycine max GN=GLYMA_18G054900 PE=3 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 1.3e-87
Identity = 189/400 (47.25%), Postives = 248/400 (62.00%), Query Frame = 1


Query: 1   MRKRKEKPEICKTTDEEKEDDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKR 60
           MRKRK    +    ++E+E++ E+  GN   GFF+CYLL S  PR+KGHTYIGFTVNP+R
Sbjct: 1   MRKRKGASAV---VEDEEENENEDCEGN---GFFACYLLTSLSPRYKGHTYIGFTVNPRR 60

Query: 61  RIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATF 120
           RIRQHNGEI CGAWRT+++RPWEMVLCIYGFPTNVSALQFEWAWQHP ESLAVR AA  F
Sbjct: 61  RIRQHNGEIGCGAWRTRKRRPWEMVLCIYGFPTNVSALQFEWAWQHPVESLAVRKAAVEF 120

Query: 121 KSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINEL 180
           KSLSG+ANK+KLAYTMLTLP+W+ +NITVN+FSTK+MK+ AGCPSLP HMK +   ++EL
Sbjct: 121 KSLSGIANKIKLAYTMLTLPSWQSMNITVNFFSTKYMKHCAGCPSLPAHMKTKFGSLDEL 180

Query: 181 PCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGRPPHV 240
           PCY+EG   + ENE D   N +  E      + +    S  VP    D+ T      P+ 
Sbjct: 181 PCYNEGIDGLSENEDD---NIDEVE------FNNNTSTSGSVPDVGDDFVTPDSPENPNH 240

Query: 241 LRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCIVAGTSR 300
                +  E N++            +G S+           ++ +  S      +  +S 
Sbjct: 241 RDKISEAFEWNKESEVRQ------PLGNSFS--------SQEQSQPFSSTTPLTMKSSST 300

Query: 301 TEI----VIDDEEENQLEGSSMNLQEQPGRENLTSGIASEISKVSRWNNGWVPTVEYEVI 360
           T +    +I+D+  + +  S  +L  QP  E   SG  S  +K    ++ +V   E E+I
Sbjct: 301 TSLHRVDIIEDDFMSVINKSGADL-IQPEPEQ--SGATSAANKNHDISHTFVVPNEAEII 360

Query: 361 DVSTPSPDCRTSSHRFKRRVTSG-KSEMIDLTKSPTFIQL 396
           D+STPSP CR+   R KRRV+S   ++ IDLT SP F+QL
Sbjct: 361 DLSTPSPSCRSVLDRKKRRVSSSVGTDFIDLTNSPNFVQL 368

[Close]

BLAST of Cucsa.151960 vs. TrEMBL
Match: A0A0B2SV39_GLYSO (Structure-specific endonuclease subunit SLX1 homolog OS=Glycine soja GN=glysoja_042264 PE=3 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 3.7e-87
Identity = 189/400 (47.25%), Postives = 247/400 (61.75%), Query Frame = 1


Query: 1   MRKRKEKPEICKTTDEEKEDDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKR 60
           MRKRK    +    ++E+E++ E+  GN   GFF+CYLL S  PR+KGHTYIGFTVNP+R
Sbjct: 1   MRKRKGASAV---VEDEEENENEDCEGN---GFFACYLLTSLSPRYKGHTYIGFTVNPRR 60

Query: 61  RIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATF 120
           RIRQHNGEI CGAWRT+++RPWEMVLCIYGFPTNVSALQFEWAWQHP ESLAVR AA  F
Sbjct: 61  RIRQHNGEIGCGAWRTRKRRPWEMVLCIYGFPTNVSALQFEWAWQHPVESLAVRKAAVEF 120

Query: 121 KSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINEL 180
           KSLSG+ANK+KLAYTMLTLP+W+ +NITVN+FSTK+MK+ AGCPSLP HMK +   ++EL
Sbjct: 121 KSLSGIANKIKLAYTMLTLPSWQSMNITVNFFSTKYMKHCAGCPSLPAHMKTKFGSLDEL 180

Query: 181 PCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGRPPHV 240
           PCY+EG   + ENE D   N +  E      + +    S  VP    D  T      P+ 
Sbjct: 181 PCYNEGIDGLSENEDD---NIDEVE------FNNNTSTSGSVPDVGDDLVTPDSPENPNH 240

Query: 241 LRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCIVAGTSR 300
                +  E N++            +G S+           ++ +  S      +  +S 
Sbjct: 241 RDKISEAFEWNKESEVRQ------PLGNSFS--------SQEQSQPFSSTTPLTMKSSST 300

Query: 301 TEI----VIDDEEENQLEGSSMNLQEQPGRENLTSGIASEISKVSRWNNGWVPTVEYEVI 360
           T +    +I+D+  + +  S  +L  QP  E   SG  S  +K    ++ +V   E E+I
Sbjct: 301 TSLHRVDIIEDDFMSVINKSGADL-IQPEPEQ--SGATSAANKNHDVSHTFVVPNEAEII 360

Query: 361 DVSTPSPDCRTSSHRFKRRVTSG-KSEMIDLTKSPTFIQL 396
           D+STPSP CR+   R KRRV+S   ++ IDLT SP F+QL
Sbjct: 361 DLSTPSPSCRSVLDRKKRRVSSSVGTDFIDLTNSPNFVQL 368

[Close]

BLAST of Cucsa.151960 vs. TAIR10
Match: AT2G30350.2 (AT2G30350.2 Excinuclease ABC, C subunit, N-terminal)

HSP 1 Score: 251.1 bits (640), Expect = 1.1e-66
Identity = 120/185 (64.86%), Postives = 140/185 (75.68%), Query Frame = 1


Query: 22  EEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP 81
           E+   G +  GFF+CYLL S  PR KG TYIGFTVNP+RRIRQHNGEI  GAWRTK+KRP
Sbjct: 16  EDGVTGKDGKGFFACYLLTSLSPRHKGQTYIGFTVNPRRRIRQHNGEITSGAWRTKKKRP 75

Query: 82  WEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPA 141
           WEMVLCIYGFPTNVSALQFEWAWQHP ES+AVR AAA FKS SGVA+K+KL YTML LPA
Sbjct: 76  WEMVLCIYGFPTNVSALQFEWAWQHPRESVAVREAAAAFKSFSGVASKIKLVYTMLNLPA 135

Query: 142 WRGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSE-GDQDMLENEGDWEYN 201
           W  LN+TVNYFS+K+  +    PSLP HMKVQV  + +L  +++  D    E+E   E N
Sbjct: 136 WNSLNLTVNYFSSKYAHHGGKSPSLPLHMKVQVCAMEDLQYFTKVDDSSQPEDEESPEVN 195

Query: 202 REREE 206
            E ++
Sbjct: 196 EEDDD 200

HSP 2 Score: 47.4 bits (111), Expect = 2.4e-05
Identity = 25/44 (56.82%), Postives = 29/44 (65.91%), Query Frame = 1


Query: 351 VEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQ 395
           V+ EVID+ TPSP CR  S   +RRV    SE IDLT SP FI+
Sbjct: 328 VDVEVIDLMTPSPSCRAGSSMKRRRV----SEFIDLTMSPNFIE 367

[Close]

BLAST of Cucsa.151960 vs. TAIR10
Match: AT5G43210.1 (AT5G43210.1 Excinuclease ABC, C subunit, N-terminal)

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-07
Identity = 30/72 (41.67%), Postives = 38/72 (52.78%), Query Frame = 1


Query: 34  FSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPT 93
           +S YL+ S     K  TY+G T +  RR++QHNGEIR GA  +   RPW     I GF  
Sbjct: 54  WSVYLILSTTEPIK--TYVGITTDFSRRLKQHNGEIRGGAKASSAGRPWLCACIITGFTC 113

Query: 94  NVSALQFEWAWQ 106
              A  FE  W+
Sbjct: 114 LSQASSFESKWK 123

[Close]

BLAST of Cucsa.151960 vs. NCBI nr
Match: gi|449471301|ref|XP_004153269.1| (PREDICTED: structure-specific endonuclease subunit SLX1 homolog [Cucumis sativus])

HSP 1 Score: 825.1 bits (2130), Expect = 5.3e-236
Identity = 395/395 (100.00%), Postives = 395/395 (100.00%), Query Frame = 1


Query: 1   MRKRKEKPEICKTTDEEKEDDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKR 60
           MRKRKEKPEICKTTDEEKEDDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKR
Sbjct: 1   MRKRKEKPEICKTTDEEKEDDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKR 60

Query: 61  RIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATF 120
           RIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATF
Sbjct: 61  RIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATF 120

Query: 121 KSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINEL 180
           KSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINEL
Sbjct: 121 KSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINEL 180

Query: 181 PCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGRPPHV 240
           PCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGRPPHV
Sbjct: 181 PCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGRPPHV 240

Query: 241 LRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCIVAGTSR 300
           LRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCIVAGTSR
Sbjct: 241 LRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCIVAGTSR 300

Query: 301 TEIVIDDEEENQLEGSSMNLQEQPGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVST 360
           TEIVIDDEEENQLEGSSMNLQEQPGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVST
Sbjct: 301 TEIVIDDEEENQLEGSSMNLQEQPGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVST 360

Query: 361 PSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL 396
           PSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL
Sbjct: 361 PSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL 395

[Close]

BLAST of Cucsa.151960 vs. NCBI nr
Match: gi|659114960|ref|XP_008457313.1| (PREDICTED: uncharacterized protein LOC103497035 [Cucumis melo])

HSP 1 Score: 763.5 bits (1970), Expect = 1.9e-217
Identity = 373/401 (93.02%), Postives = 381/401 (95.01%), Query Frame = 1


Query: 1   MRKRKEKPEICKT-----TDEEKE-DDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGF 60
           MRKRKEKPEICKT      DEEKE DDEEEERGN VNGFFSCYLLASACPRFKGHTYIGF
Sbjct: 1   MRKRKEKPEICKTMAAVVQDEEKEDDDEEEERGNGVNGFFSCYLLASACPRFKGHTYIGF 60

Query: 61  TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVR 120
           TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVR
Sbjct: 61  TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVR 120

Query: 121 SAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMKVQV 180
           SAAATFKSLSGVANKVKLAYTMLTLPAW GLNITVNYFSTKFMKNAAGCPSLPEHMKVQV
Sbjct: 121 SAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQV 180

Query: 181 SPINELPCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTD 240
           SPI+ELPCYSEGDQ +LENE DWEY+RE EEIC F+VYGSMKEVSNEVPQKLMDYQTGTD
Sbjct: 181 SPIDELPCYSEGDQGVLENEDDWEYDRESEEICSFQVYGSMKEVSNEVPQKLMDYQTGTD 240

Query: 241 GRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCI 300
           GRPP VLRGCDKELETNEQVPPSSCTPSY+DVGMSYDLCACDEGLENDEREAASCGQSC 
Sbjct: 241 GRPPPVLRGCDKELETNEQVPPSSCTPSYVDVGMSYDLCACDEGLENDEREAASCGQSCT 300

Query: 301 VAGTSRTEIVIDDEEENQLEGSSMNLQEQPGRENLTSGIASEISKVSRWNNGWVPTVEYE 360
           VAGTSRTEI+IDD EENQ EGS MNLQEQPGR+NLTSGIASEISKVSR +NG VPTVEYE
Sbjct: 301 VAGTSRTEIIIDDGEENQFEGSGMNLQEQPGRKNLTSGIASEISKVSRCSNGLVPTVEYE 360

Query: 361 VIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL 396
           VIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL
Sbjct: 361 VIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL 401

[Close]

BLAST of Cucsa.151960 vs. NCBI nr
Match: gi|356537639|ref|XP_003537333.1| (PREDICTED: uncharacterized protein LOC100801307 [Glycine max])

HSP 1 Score: 334.3 bits (856), Expect = 2.8e-88
Identity = 194/403 (48.14%), Postives = 251/403 (62.28%), Query Frame = 1


Query: 1   MRKRKEKPEICKTTDEEKE------DDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGF 60
           MRKRK    +    +EE+       +++ E    E NGFF+CYLL S  PRFKGHTYIGF
Sbjct: 1   MRKRK----VASVIEEEESVQNHGHNNQNENEDCEGNGFFACYLLTSLSPRFKGHTYIGF 60

Query: 61  TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVR 120
           TVNP+RRIRQHNGEI CGAWRTK++RPWEMVLCIYGFPTNVSALQFEWAWQHP ESLAVR
Sbjct: 61  TVNPRRRIRQHNGEIGCGAWRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPVESLAVR 120

Query: 121 SAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMKVQV 180
            AA  FKSLSG+ANK+KLAYTMLTLP+W+ +NITVN+FSTK+MK+ AGCPSLP HMK + 
Sbjct: 121 KAAVEFKSLSGIANKIKLAYTMLTLPSWQSMNITVNFFSTKYMKHCAGCPSLPVHMKTKF 180

Query: 181 SPINELPCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTD 240
             ++ELPCY++G   + ENE D   +  + +       GS+ +VS+++       Q   D
Sbjct: 181 GSLDELPCYNKGIDGLSENEDD-TIDEVQFDDNNISTSGSVPDVSDDLVTP-DSPQNPND 240

Query: 241 GRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCI 300
           G         +KE E  E  PP         +G S+   A  E  +          +S  
Sbjct: 241 GDKISEAFEWNKESEARE--PP---------LGNSF---ASQEQSQLFSSTTPLTMKSSS 300

Query: 301 VAGTSRTEIVIDDEEENQLEGSSMNL-QEQPGRENLTSGIASEISKVSRWNNGWVPTVEY 360
                R EI+ +D+  + +  S  +L Q +P +   T+ +A++   V R    +V   E 
Sbjct: 301 TTSLQRAEIIEEDDFMSVMNKSDADLSQPEPEQSGATTLVANKNRDVGR---TFVVPHET 360

Query: 361 EVIDVSTPSPDCRTSSHRFKRRVTSG-KSEMIDLTKSPTFIQL 396
           E+ID+STPSP CR+   R KRRV+S   ++ IDLT SP FI+L
Sbjct: 361 EIIDLSTPSPSCRSVLDRKKRRVSSSVGTDFIDLTNSPNFIEL 380

[Close]

BLAST of Cucsa.151960 vs. NCBI nr
Match: gi|955385076|ref|XP_014626527.1| (PREDICTED: uncharacterized protein LOC100788794 [Glycine max])

HSP 1 Score: 331.6 bits (849), Expect = 1.8e-87
Identity = 189/400 (47.25%), Postives = 248/400 (62.00%), Query Frame = 1


Query: 1   MRKRKEKPEICKTTDEEKEDDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKR 60
           MRKRK    +    ++E+E++ E+  GN   GFF+CYLL S  PR+KGHTYIGFTVNP+R
Sbjct: 1   MRKRKGASAV---VEDEEENENEDCEGN---GFFACYLLTSLSPRYKGHTYIGFTVNPRR 60

Query: 61  RIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATF 120
           RIRQHNGEI CGAWRT+++RPWEMVLCIYGFPTNVSALQFEWAWQHP ESLAVR AA  F
Sbjct: 61  RIRQHNGEIGCGAWRTRKRRPWEMVLCIYGFPTNVSALQFEWAWQHPVESLAVRKAAVEF 120

Query: 121 KSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINEL 180
           KSLSG+ANK+KLAYTMLTLP+W+ +NITVN+FSTK+MK+ AGCPSLP HMK +   ++EL
Sbjct: 121 KSLSGIANKIKLAYTMLTLPSWQSMNITVNFFSTKYMKHCAGCPSLPAHMKTKFGSLDEL 180

Query: 181 PCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGRPPHV 240
           PCY+EG   + ENE D   N +  E      + +    S  VP    D+ T      P+ 
Sbjct: 181 PCYNEGIDGLSENEDD---NIDEVE------FNNNTSTSGSVPDVGDDFVTPDSPENPNH 240

Query: 241 LRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCIVAGTSR 300
                +  E N++            +G S+           ++ +  S      +  +S 
Sbjct: 241 RDKISEAFEWNKESEVRQ------PLGNSFS--------SQEQSQPFSSTTPLTMKSSST 300

Query: 301 TEI----VIDDEEENQLEGSSMNLQEQPGRENLTSGIASEISKVSRWNNGWVPTVEYEVI 360
           T +    +I+D+  + +  S  +L  QP  E   SG  S  +K    ++ +V   E E+I
Sbjct: 301 TSLHRVDIIEDDFMSVINKSGADL-IQPEPEQ--SGATSAANKNHDISHTFVVPNEAEII 360

Query: 361 DVSTPSPDCRTSSHRFKRRVTSG-KSEMIDLTKSPTFIQL 396
           D+STPSP CR+   R KRRV+S   ++ IDLT SP F+QL
Sbjct: 361 DLSTPSPSCRSVLDRKKRRVSSSVGTDFIDLTNSPNFVQL 368

[Close]

BLAST of Cucsa.151960 vs. NCBI nr
Match: gi|734437037|gb|KHN48399.1| (Structure-specific endonuclease subunit SLX1 [Glycine soja])

HSP 1 Score: 330.1 bits (845), Expect = 5.3e-87
Identity = 189/400 (47.25%), Postives = 247/400 (61.75%), Query Frame = 1


Query: 1   MRKRKEKPEICKTTDEEKEDDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKR 60
           MRKRK    +    ++E+E++ E+  GN   GFF+CYLL S  PR+KGHTYIGFTVNP+R
Sbjct: 1   MRKRKGASAV---VEDEEENENEDCEGN---GFFACYLLTSLSPRYKGHTYIGFTVNPRR 60

Query: 61  RIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATF 120
           RIRQHNGEI CGAWRT+++RPWEMVLCIYGFPTNVSALQFEWAWQHP ESLAVR AA  F
Sbjct: 61  RIRQHNGEIGCGAWRTRKRRPWEMVLCIYGFPTNVSALQFEWAWQHPVESLAVRKAAVEF 120

Query: 121 KSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINEL 180
           KSLSG+ANK+KLAYTMLTLP+W+ +NITVN+FSTK+MK+ AGCPSLP HMK +   ++EL
Sbjct: 121 KSLSGIANKIKLAYTMLTLPSWQSMNITVNFFSTKYMKHCAGCPSLPAHMKTKFGSLDEL 180

Query: 181 PCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGRPPHV 240
           PCY+EG   + ENE D   N +  E      + +    S  VP    D  T      P+ 
Sbjct: 181 PCYNEGIDGLSENEDD---NIDEVE------FNNNTSTSGSVPDVGDDLVTPDSPENPNH 240

Query: 241 LRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCIVAGTSR 300
                +  E N++            +G S+           ++ +  S      +  +S 
Sbjct: 241 RDKISEAFEWNKESEVRQ------PLGNSFS--------SQEQSQPFSSTTPLTMKSSST 300

Query: 301 TEI----VIDDEEENQLEGSSMNLQEQPGRENLTSGIASEISKVSRWNNGWVPTVEYEVI 360
           T +    +I+D+  + +  S  +L  QP  E   SG  S  +K    ++ +V   E E+I
Sbjct: 301 TSLHRVDIIEDDFMSVINKSGADL-IQPEPEQ--SGATSAANKNHDVSHTFVVPNEAEII 360

Query: 361 DVSTPSPDCRTSSHRFKRRVTSG-KSEMIDLTKSPTFIQL 396
           D+STPSP CR+   R KRRV+S   ++ IDLT SP F+QL
Sbjct: 361 DLSTPSPSCRSVLDRKKRRVSSSVGTDFIDLTNSPNFVQL 368

The following BLAST results are available for this feature:

BLAST of Cucsa.151960 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SLX1_MOUSE	2.3e-29	40.85	Structure-specific endonuclease subunit SLX1 OS=Mus musculus GN=Slx1b PE=2 SV=1	[more]
SLX1_RAT	6.6e-29	40.24	Structure-specific endonuclease subunit SLX1 OS=Rattus norvegicus GN=Slx1b PE=2 ...	[more]
SLX1_BOVIN	1.6e-27	42.07	Structure-specific endonuclease subunit SLX1 OS=Bos taurus GN=SLX1A PE=2 SV=1	[more]
SLX1_XENLA	1.1e-26	38.31	Structure-specific endonuclease subunit slx1 OS=Xenopus laevis GN=slx1a PE=2 SV=...	[more]
SLX1_NEMVE	6.8e-26	40.94	Structure-specific endonuclease subunit SLX1 homolog OS=Nematostella vectensis G...	[more]

BLAST of Cucsa.151960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0Y6_CUCSA	3.7e-236	100.00	Structure-specific endonuclease subunit SLX1 homolog OS=Cucumis sativus GN=Csa_1...	[more]
A0A0B2SHX4_GLYSO	2.0e-88	48.14	Structure-specific endonuclease subunit SLX1 homolog OS=Glycine soja GN=glysoja_...	[more]
I1LLV5_SOYBN	2.0e-88	48.14	Structure-specific endonuclease subunit SLX1 homolog OS=Glycine max GN=GLYMA_11G...	[more]
I1MZS6_SOYBN	1.3e-87	47.25	Structure-specific endonuclease subunit SLX1 homolog OS=Glycine max GN=GLYMA_18G...	[more]
A0A0B2SV39_GLYSO	3.7e-87	47.25	Structure-specific endonuclease subunit SLX1 homolog OS=Glycine soja GN=glysoja_...	[more]

BLAST of Cucsa.151960 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G30350.2	1.1e-66	64.86	Excinuclease ABC, C subunit, N-terminal	[more]
AT5G43210.1	1.5e-07	41.67	Excinuclease ABC, C subunit, N-terminal	[more]

BLAST of Cucsa.151960 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449471301\|ref\|XP_004153269.1\|	5.3e-236	100.00	PREDICTED: structure-specific endonuclease subunit SLX1 homolog [Cucumis sativus...	[more]
gi\|659114960\|ref\|XP_008457313.1\|	1.9e-217	93.02	PREDICTED: uncharacterized protein LOC103497035 [Cucumis melo]	[more]
gi\|356537639\|ref\|XP_003537333.1\|	2.8e-88	48.14	PREDICTED: uncharacterized protein LOC100801307 [Glycine max]	[more]
gi\|955385076\|ref\|XP_014626527.1\|	1.8e-87	47.25	PREDICTED: uncharacterized protein LOC100788794 [Glycine max]	[more]
gi\|734437037\|gb\|KHN48399.1\|	5.3e-87	47.25	Structure-specific endonuclease subunit SLX1 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000305	GIY-YIG_endonuc
IPR027520	Slx1

Vocabulary: **Biological Process**
Term	Definition
GO:0006281	DNA repair

Vocabulary: **Molecular Function**
Term	Definition
GO:0017108	5'-flap endonuclease activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0033557	Slx1-Slx4 complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006308	DNA catabolic process
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0008150	biological_process
cellular_component	GO:0033557	Slx1-Slx4 complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0017108	5'-flap endonuclease activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.151960.1	Cucsa.151960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000305	GIY-YIG nuclease superfamily	PFAM	PF01541	GIY-YIG	coord: 37..108 score: 2.5
IPR000305	GIY-YIG nuclease superfamily	PROFILE	PS50164	GIY_YIG	coord: 32..114 score: 17
IPR027520	Structure-specific endonuclease subunit Slx1	HAMAP	MF_03100	Endonuc_su_Slx1	coord: 29..381 score: 2
None	No IPR available	PANTHER	PTHR20208	FAMILY NOT NAMED	coord: 14..194 score: 1.9
None	No IPR available	PANTHER	PTHR20208:SF10	STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1	coord: 14..194 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.151960	Cla008116	Watermelon (97103) v1	cgywmB270
Cucsa.151960	Csa1G533630	Cucumber (Chinese Long) v2	cgycuB219
Cucsa.151960	MELO3C020503	Melon (DHL92) v3.5.1	cgymeB255
Cucsa.151960	ClCG03G000240	Watermelon (Charleston Gray)	cgywcgB256
Cucsa.151960	CSPI01G24370	Wild cucumber (PI 183967)	cgycpiB224
Cucsa.151960	Lsi02G012280	Bottle gourd (USVL1VR-Ls)	cgylsiB244
Cucsa.151960	MELO3C020503.2	Melon (DHL92) v3.6.1	cgymedB253
Cucsa.151960	CsaV3_1G036670	Cucumber (Chinese Long) v3	cgycucB230
Cucsa.151960	Cla97C03G051050	Watermelon (97103) v2	cgywmbB257
Cucsa.151960	Bhi08G000365	Wax gourd	cgywgoB296
Cucsa.151960	Carg07021	Silver-seed gourd	carcgyB0601

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.151960	Cucurbita maxima (Rimu)	cgycmaB0418
Cucsa.151960	Cucurbita maxima (Rimu)	cgycmaB0421
Cucsa.151960	Cucurbita moschata (Rifu)	cgycmoB0417
Cucsa.151960	Cucurbita moschata (Rifu)	cgycmoB0418
Cucsa.151960	Cucurbita moschata (Rifu)	cgycmoB0421
Cucsa.151960	Cucurbita pepo (Zucchini)	cgycpeB0405
Cucsa.151960	Silver-seed gourd	carcgyB0602