Cucsa.151960.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GAGAGAGAGAGAGAGATGCGGAAGAGGAAAGAGAAACCGGAAATCTGTAAAACCACGGATGAGGAGAAGGAAGACGATGAAGAAGAAGAGAGAGGAAaCGAAGTGAATGGCTTCTTTtCATGCTATCTCTTGGCCTCTGCTTGCCCTCGTTTCAaaGGCCATACCTATATCGGGTTTGAAACTTTCCCACTCCATTTTTAGCTCCTTGCTTCCCTACATCGGACCTTCTATTTGCTTTCTAAATTCCCAATTTTCGAATTTCTTTACCATCTTTGATTCGGTTCTTTTGTAAAGATTGAGTGAGGGAAAACATAAAGAAATGTTGGTGAGTCGATCTGATCTGCTGGGTATTGATTTGTTGACTGTTTATATGAAATTTTAGATTCACAGTGAACCCGAAGCGCAGAATCAGACAACACAATGGTGAGATTAGATGCGGTGCTTGGCGTACTAAGAGGAAGAGACCTTGGGAGATGGTCTTGTGCATTTATGGCTTCCCTACTAATGTTTCTGCTCTTCAGGTTACATTTCCTGACTTTCAGCTCTAAACTAGTTTGATTCTGCGTTTTTTCTACTTGATTCTCTTTTACTAGCTGAATGAATGACACTTCGATGATTATGCAAATGTTGAGATGTTAGATTAAAAGAAGAAAAAAaGCAGATTCTCTTTCAGAACTCATTTTTTTtATCATAAGAAATAGTGGCTTGCATATTAGGGATTTTATGGCTTAAAGAATATACCAAAATTTGTTGCTGCTTTAATTTTCTTCTTTAGCCGTTTACTTTCTTGTAAGTTTCCATCAGTTCTAGAATTTGATTTTCTAAACTGTGGGTACAGTTTGAATGGGCGTGGCAGCATCCTAATGAGTCACTGGCTGTAAGAAGTGCTGCTGCAACTTTCAAGTCTCTCTCTGGAGTTGCTAACAAAGTTAAACTTGCATACACAATGCTCACACTTCCTGCTTGGCGTGGGTATGACATTTGAAAAAATTTATACAATCTTGTCGAATTTGTCTGTTAAATATGCGAGAAGCGTGAAGAGAAACCTAAAAATAATGAAAATATCCATCAACATGTATTGAAAGGTTTGACATTGATATTAAATATTATTGAACATCTCCAATATCTTCTATAAATGCTTGTAAACATCAAATCTTCAAATCGATGTGGACATGAGTATTTTAATCCTTGGATAATCCTCCATATCAGCAAGAAAAGGGAAAGATTTATAGTATCTCAATAAAGACAACAATCTTATAACTGTCTTGTTTTTGGGGCAAAACCAAAGTTTGAGAGTGAAAAGGGCGATATCTTATTACTGTGATTTATGAAGGAGCAACAAACTGATGTAATTTCAATCAATTTTGTCTGGCAATCTCTTTATTCACTTATTTCTCCTTATCCTTGCAGTTTAAATATAACTGTAAACTACTTCTCTACAAAGTTCATGAAGAATGCGGCTGGTTGCCCAAGTTTGCCAGAGCATATGAAGGTCCAAGTTTCCCCCATCAATGAGCTTCCATGCTATTCCGAAGGAGATCAAGATATGCTTGAAAATGAAGGTGACTGGGAGTATAATCGAGAACGTGAAGAAATTTGTGGTTTTCGAGTGTATGGATCAATGAAAGAAGTTTCAAATGAAGTTCCTCAAAAGTTAATGGATTATCAGACAGGTACAGATGGAAGACCTCCTCACGTGTTGCGTGGATGTGATAAGGAGCTTGAGACCAATGAACAAGTGCCACCTTCTTCATGTACTCCGTCTTATATTGATGTGGGTATGTCTTATGACTTGTGTGCATGTGATGAAGGACTCGAGAATGATGAAAGAGAGGCAGCTTCGTGTGGTCAGTCTTGCATTGTAGCAGGTACATCTAGAACTGAAATTGTCATTGATGACGAAGAGGAAAACCAATTAGAAGGGAGTAGTATGAACTTGCAGGAGCAACCAGGTAGGGAGAATTTAACATCAGGAATAGCTTCTGAAATCAGTAAAGTTTCAAGGTGGAACAATGGCTGGGTTCCAACTGTTGAGTATGAGGTTATCGATGTGTCTACCCCGTCTCCAGACTGCCGAACAAGTTCGCATAGATTCAAGAGAAGAGTTACTTCCGGTAAGTCTGAGATGATTGACTTGACTAAATCTCCTACATTTATTCAATTGTAGAAGGATGGATGGATTTGGATTATTGTGCATATAGGAGATATGGAATGAGTTTTCATGAGAAGTTTCATTTTTGCAATGAAGAGGTAGTATTACTATAACAGATAGCATCTTCTCAACCCTTTTCAGAGATAACGTGGGCTCAACTATGGTTGACTAGACCAAATAAGAGGGGAACATGTTGTCAAGTTATATATAATAATTATAATAACAGCCTCTCTTGCAAAGGCATCATTTTAAAGGGGAATCTAAGTCTGAAAAATAACATTGAATCGGTTGTGGTATCAATTAATTTGTTTCAAACGACCGGGATCAATGTTGAACTATGCAACTACACCTTGGTTACATATCCATCTATACTACTATATATGGATGGAGTGTAGATGAGAGA GAGAGAGAGAGAGAGATGCGGAAGAGGAAAGAGAAACCGGAAATCTGTAAAACCACGGATGAGGAGAAGGAAGACGATGAAGAAGAAGAGAGAGGAAACGAAGTGAATGGCTTCTTTTCATGCTATCTCTTGGCCTCTGCTTGCCCTCGTTTCAAAGGCCATACCTATATCGGATTCACAGTGAACCCGAAGCGCAGAATCAGACAACACAATGGTGAGATTAGATGCGGTGCTTGGCGTACTAAGAGGAAGAGACCTTGGGAGATGGTCTTGTGCATTTATGGCTTCCCTACTAATGTTTCTGCTCTTCAGTTTGAATGGGCGTGGCAGCATCCTAATGAGTCACTGGCTGTAAGAAGTGCTGCTGCAACTTTCAAGTCTCTCTCTGGAGTTGCTAACAAAGTTAAACTTGCATACACAATGCTCACACTTCCTGCTTGGCGTGGTTTAAATATAACTGTAAACTACTTCTCTACAAAGTTCATGAAGAATGCGGCTGGTTGCCCAAGTTTGCCAGAGCATATGAAGGTCCAAGTTTCCCCCATCAATGAGCTTCCATGCTATTCCGAAGGAGATCAAGATATGCTTGAAAATGAAGGTGACTGGGAGTATAATCGAGAACGTGAAGAAATTTGTGGTTTTCGAGTGTATGGATCAATGAAAGAAGTTTCAAATGAAGTTCCTCAAAAGTTAATGGATTATCAGACAGGTACAGATGGAAGACCTCCTCACGTGTTGCGTGGATGTGATAAGGAGCTTGAGACCAATGAACAAGTGCCACCTTCTTCATGTACTCCGTCTTATATTGATGTGGGTATGTCTTATGACTTGTGTGCATGTGATGAAGGACTCGAGAATGATGAAAGAGAGGCAGCTTCGTGTGGTCAGTCTTGCATTGTAGCAGGTACATCTAGAACTGAAATTGTCATTGATGACGAAGAGGAAAACCAATTAGAAGGGAGTAGTATGAACTTGCAGGAGCAACCAGGTAGGGAGAATTTAACATCAGGAATAGCTTCTGAAATCAGTAAAGTTTCAAGGTGGAACAATGGCTGGGTTCCAACTGTTGAGTATGAGGTTATCGATGTGTCTACCCCGTCTCCAGACTGCCGAACAAGTTCGCATAGATTCAAGAGAAGAGTTACTTCCGGTAAGTCTGAGATGATTGACTTGACTAAATCTCCTACATTTATTCAATTGTAGAAGGATGGATGGATTTGGATTATTGTGCATATAGGAGATATGGAATGAGTTTTCATGAGAAGTTTCATTTTTGCAATGAAGAGGTAGTATTACTATAACAGATAGCATCTTCTCAACCCTTTTCAGAGATAACGTGGGCTCAACTATGGTTGACTAGACCAAATAAGAGGGGAACATGTTGTCAAGttatatataataattataataaCAGCCTCTCTTGCAAAGGCATCATTTTAAAGGGGAATCTAAGTCTGAAAAATAACATTGAATCGGTTGTGGTATCAATTAATTTGTTTCAAACGACCGGGATCAATGTTGAACTATGCAACTACACCTTGGTTACATATCCATCTATACTACTATATATGGATGGAGTGTAGATGAGAGA ATGCGGAAGAGGAAAGAGAAACCGGAAATCTGTAAAACCACGGATGAGGAGAAGGAAGACGATGAAGAAGAAGAGAGAGGAAaCGAAGTGAATGGCTTCTTTtCATGCTATCTCTTGGCCTCTGCTTGCCCTCGTTTCAaaGGCCATACCTATATCGGATTCACAGTGAACCCGAAGCGCAGAATCAGACAACACAATGGTGAGATTAGATGCGGTGCTTGGCGTACTAAGAGGAAGAGACCTTGGGAGATGGTCTTGTGCATTTATGGCTTCCCTACTAATGTTTCTGCTCTTCAGTTTGAATGGGCGTGGCAGCATCCTAATGAGTCACTGGCTGTAAGAAGTGCTGCTGCAACTTTCAAGTCTCTCTCTGGAGTTGCTAACAAAGTTAAACTTGCATACACAATGCTCACACTTCCTGCTTGGCGTGGTTTAAATATAACTGTAAACTACTTCTCTACAAAGTTCATGAAGAATGCGGCTGGTTGCCCAAGTTTGCCAGAGCATATGAAGGTCCAAGTTTCCCCCATCAATGAGCTTCCATGCTATTCCGAAGGAGATCAAGATATGCTTGAAAATGAAGGTGACTGGGAGTATAATCGAGAACGTGAAGAAATTTGTGGTTTTCGAGTGTATGGATCAATGAAAGAAGTTTCAAATGAAGTTCCTCAAAAGTTAATGGATTATCAGACAGGTACAGATGGAAGACCTCCTCACGTGTTGCGTGGATGTGATAAGGAGCTTGAGACCAATGAACAAGTGCCACCTTCTTCATGTACTCCGTCTTATATTGATGTGGGTATGTCTTATGACTTGTGTGCATGTGATGAAGGACTCGAGAATGATGAAAGAGAGGCAGCTTCGTGTGGTCAGTCTTGCATTGTAGCAGGTACATCTAGAACTGAAATTGTCATTGATGACGAAGAGGAAAACCAATTAGAAGGGAGTAGTATGAACTTGCAGGAGCAACCAGGTAGGGAGAATTTAACATCAGGAATAGCTTCTGAAATCAGTAAAGTTTCAAGGTGGAACAATGGCTGGGTTCCAACTGTTGAGTATGAGGTTATCGATGTGTCTACCCCGTCTCCAGACTGCCGAACAAGTTCGCATAGATTCAAGAGAAGAGTTACTTCCGGTAAGTCTGAGATGATTGACTTGACTAAATCTCCTACATTTATTCAATTGTAG MRKRKEKPEICKTTDEEKEDDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCIVAGTSRTEIVIDDEEENQLEGSSMNLQEQPGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL*
BLAST of Cucsa.151960.1 vs. Swiss-Prot
Match: SLX1_MOUSE (Structure-specific endonuclease subunit SLX1 OS=Mus musculus GN=Slx1b PE=2 SV=1) HSP 1 Score: 131.3 bits (329), Expect = 2.3e-29 Identity = 67/164 (40.85%), Postives = 92/164 (56.10%), Query Frame = 1
BLAST of Cucsa.151960.1 vs. Swiss-Prot
Match: SLX1_RAT (Structure-specific endonuclease subunit SLX1 OS=Rattus norvegicus GN=Slx1b PE=2 SV=1) HSP 1 Score: 129.8 bits (325), Expect = 6.6e-29 Identity = 66/164 (40.24%), Postives = 91/164 (55.49%), Query Frame = 1
BLAST of Cucsa.151960.1 vs. Swiss-Prot
Match: SLX1_BOVIN (Structure-specific endonuclease subunit SLX1 OS=Bos taurus GN=SLX1A PE=2 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 1.6e-27 Identity = 61/145 (42.07%), Postives = 84/145 (57.93%), Query Frame = 1
BLAST of Cucsa.151960.1 vs. Swiss-Prot
Match: SLX1_XENLA (Structure-specific endonuclease subunit slx1 OS=Xenopus laevis GN=slx1a PE=2 SV=1) HSP 1 Score: 122.5 bits (306), Expect = 1.1e-26 Identity = 59/154 (38.31%), Postives = 88/154 (57.14%), Query Frame = 1
BLAST of Cucsa.151960.1 vs. Swiss-Prot
Match: SLX1_NEMVE (Structure-specific endonuclease subunit SLX1 homolog OS=Nematostella vectensis GN=v1g174298 PE=3 SV=1) HSP 1 Score: 119.8 bits (299), Expect = 6.8e-26 Identity = 61/149 (40.94%), Postives = 87/149 (58.39%), Query Frame = 1
BLAST of Cucsa.151960.1 vs. TrEMBL
Match: A0A0A0M0Y6_CUCSA (Structure-specific endonuclease subunit SLX1 homolog OS=Cucumis sativus GN=Csa_1G533630 PE=3 SV=1) HSP 1 Score: 825.1 bits (2130), Expect = 3.7e-236 Identity = 395/395 (100.00%), Postives = 395/395 (100.00%), Query Frame = 1
BLAST of Cucsa.151960.1 vs. TrEMBL
Match: A0A0B2SHX4_GLYSO (Structure-specific endonuclease subunit SLX1 homolog OS=Glycine soja GN=glysoja_047464 PE=3 SV=1) HSP 1 Score: 334.3 bits (856), Expect = 2.0e-88 Identity = 194/403 (48.14%), Postives = 251/403 (62.28%), Query Frame = 1
BLAST of Cucsa.151960.1 vs. TrEMBL
Match: I1LLV5_SOYBN (Structure-specific endonuclease subunit SLX1 homolog OS=Glycine max GN=GLYMA_11G161200 PE=3 SV=1) HSP 1 Score: 334.3 bits (856), Expect = 2.0e-88 Identity = 194/403 (48.14%), Postives = 251/403 (62.28%), Query Frame = 1
BLAST of Cucsa.151960.1 vs. TrEMBL
Match: I1MZS6_SOYBN (Structure-specific endonuclease subunit SLX1 homolog OS=Glycine max GN=GLYMA_18G054900 PE=3 SV=1) HSP 1 Score: 331.6 bits (849), Expect = 1.3e-87 Identity = 189/400 (47.25%), Postives = 248/400 (62.00%), Query Frame = 1
BLAST of Cucsa.151960.1 vs. TrEMBL
Match: A0A0B2SV39_GLYSO (Structure-specific endonuclease subunit SLX1 homolog OS=Glycine soja GN=glysoja_042264 PE=3 SV=1) HSP 1 Score: 330.1 bits (845), Expect = 3.7e-87 Identity = 189/400 (47.25%), Postives = 247/400 (61.75%), Query Frame = 1
BLAST of Cucsa.151960.1 vs. TAIR10
Match: AT2G30350.2 (AT2G30350.2 Excinuclease ABC, C subunit, N-terminal) HSP 1 Score: 251.1 bits (640), Expect = 1.1e-66 Identity = 120/185 (64.86%), Postives = 140/185 (75.68%), Query Frame = 1
HSP 2 Score: 47.4 bits (111), Expect = 2.4e-05 Identity = 25/44 (56.82%), Postives = 29/44 (65.91%), Query Frame = 1
BLAST of Cucsa.151960.1 vs. TAIR10
Match: AT5G43210.1 (AT5G43210.1 Excinuclease ABC, C subunit, N-terminal) HSP 1 Score: 54.7 bits (130), Expect = 1.5e-07 Identity = 30/72 (41.67%), Postives = 38/72 (52.78%), Query Frame = 1
BLAST of Cucsa.151960.1 vs. NCBI nr
Match: gi|449471301|ref|XP_004153269.1| (PREDICTED: structure-specific endonuclease subunit SLX1 homolog [Cucumis sativus]) HSP 1 Score: 825.1 bits (2130), Expect = 5.3e-236 Identity = 395/395 (100.00%), Postives = 395/395 (100.00%), Query Frame = 1
BLAST of Cucsa.151960.1 vs. NCBI nr
Match: gi|659114960|ref|XP_008457313.1| (PREDICTED: uncharacterized protein LOC103497035 [Cucumis melo]) HSP 1 Score: 763.5 bits (1970), Expect = 1.9e-217 Identity = 373/401 (93.02%), Postives = 381/401 (95.01%), Query Frame = 1
BLAST of Cucsa.151960.1 vs. NCBI nr
Match: gi|356537639|ref|XP_003537333.1| (PREDICTED: uncharacterized protein LOC100801307 [Glycine max]) HSP 1 Score: 334.3 bits (856), Expect = 2.8e-88 Identity = 194/403 (48.14%), Postives = 251/403 (62.28%), Query Frame = 1
BLAST of Cucsa.151960.1 vs. NCBI nr
Match: gi|955385076|ref|XP_014626527.1| (PREDICTED: uncharacterized protein LOC100788794 [Glycine max]) HSP 1 Score: 331.6 bits (849), Expect = 1.8e-87 Identity = 189/400 (47.25%), Postives = 248/400 (62.00%), Query Frame = 1
BLAST of Cucsa.151960.1 vs. NCBI nr
Match: gi|734437037|gb|KHN48399.1| (Structure-specific endonuclease subunit SLX1 [Glycine soja]) HSP 1 Score: 330.1 bits (845), Expect = 5.3e-87 Identity = 189/400 (47.25%), Postives = 247/400 (61.75%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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