CsaV3_1G036670 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G036670
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Structure-specific endonuclease subunit SLX1 homolog
Location	chr1 : 22503814 .. 22505874 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTTTCATGCTATCTCTTGGCCTCTGCTTGCCCTCGTTTCAAAGGCCATACCTATATCGGGTTTGAAACTTTCCCACTCCATTTTTAGCTCCTTGCTTCCCTACATCGGACCTTCTATTTGCTTTCTAAATTCCCAATTTTCGAATTTCTTTACCATCTTTGATTCGGTTCTTTTGTAAAGATTGAGTGAGGGAAAACATAAAGAAATGTTGGTGAGTCGATCTGATCTGCTGGGTATTGATTTGTTGACTGTTTATATGAAATTTTAGATTCACAGTGAACCCGAAGCGCAGAATCAGACAACACAATGGTGAGATTAGATGCGGTGCTTGGCGTACTAAGAGGAAGAGACCTTGGGAGATGGTCTTGTGCATTTATGGCTTCCCTACTAATGTTTCTGCTCTTCAGGTTACATTTCCTGACTTTCAGCTCTAAACTAGTTTGATTCTGCGTTTTTTCTACTTGATTCTCTTTTACTAGCTGAATGAATGACACTTCGATGATTATGCAAATGTTGAGATGTTAGATTAAAAGAAGAAAAAAAGCAGATTCTCTTTCAGAACTCATTTTTTTTATCATAAGAAATAGTGGCTTGCATATTAGGGATTTTATGGCTTAAAGAATATACCAAAATTTGTTGCTGCTTTAATTTTCTTCTTTAGCCGTTTACTTTCTTGTAAGTTTCCATCAGTTCTAGAATTTGATTTTCTAAACTGTGGGTACAGTTTGAATGGGCGTGGCAGCATCCTAATGAGTCACTGGCTGTAAGAAGTGCTGCTGCAACTTTCAAGTCTCTCTCTGGAGTTGCTAACAAAGTTAAACTTGCATACACAATGCTCACACTTCCTGCTTGGCGTGGGTATGACATTTGAAAAAATTTATACAATCTTGTCGAATTTGTCTGTTAAATATGCGAGAAGCGTGAAGAGAAACCTAAAAATAATGAAAATATCCATCAACATGTATTGAAAGGTTTGACATTGATATTAAATATTATTGAACATCTCCAATATCTTCTATAAATGCTTGTAAACATCAAATCTTCAAATCGATGTGGACATGAGTATTTTAATCCTTGGATAATCCTCCATATCAGCAAGAAAAGGGAAAGATTTATAGTATCTCAATAAAGACAACAATCTTATAACTGTCTTGTTTTTGGGGCAAAACCAAAGTTTGAGAGTGAAAAGGGCGATATCTTATTACTGTGATTTATGAAGGAGCAACAAACTGATGTAATTTCAATCAATTTTGTCTGGCAATCTCTTTATTCACTTATTTCTCCTTATCCTTGCAGTTTAAATATAACTGTAAACTACTTCTCTACAAAGTTCATGAAGAATGCGGCTGGTTGCCCAAGTTTGCCAGAGCATATGAAGGTCCAAGTTTCCCCCATCAATGAGCTTCCATGCTATTCCGAAGGAGATCAAGATATGCTTGAAAATGAAGGTGACTGGGAGTATAATCGAGAACGTGAAGAAATTTGTGGTTTTCGAGTGTATGGATCAATGAAAGAAGTTTCAAATGAAGTTCCTCAAAAGTTAATGGATTATCAGACAGGTACAGATGGAAGACCTCCTCACGTGTTGCGTGGATGTGATAAGGAGCTTGAGACCAATGAACAAGTGCCACCTTCTTCATGTACTCCGTCTTATATTGATGTGGGTATGTCTTATGACTTGTGTGCATGTGATGAAGGACTCGAGAATGATGAAAGAGAGGCAGCTTCGTGTGGTCAGTCTTGCATTGTAGCAGGTACATCTAGAACTGAAATTGTCATTGATGACGAAGAGGAAAACCAATTAGAAGGGAGTAGTATGAACTTGCAGGAGCAACCAGGTAGGGAGAATTTAACATCAGGAATAGCTTCTGAAATCAGTAAAGTTTCAAGGTGGAACAATGGCTGGGTTCCAACTGTTGAGTATGAGGTTATCGATGTGTCTACCCCGTCTCCAGACTGCCGAACAAGTTCGCATAGATTCAAGAGAAGAGTTACTTCCGGTAAGTCTGAGATGATTGACTTGACTAAATCTCCTACATTTATTCAATTGTAG

mRNA sequence

ATGGCTTCTTTTCATGCTATCTCTTGGCCTCTGCTTGCCCTCGTTTCAAAGGCCATACCTATATCGGTGAACCCGAAGCGCAGAATCAGACAACACAATGGTGAGATTAGATGCGGTGCTTGGCGTACTAAGAGGAAGAGACCTTGGGAGATGGTCTTGTGCATTTATGGCTTCCCTACTAATGTTTCTGCTCTTCAGTTTGAATGGGCGTGGCAGCATCCTAATGAGTCACTGGCTGTAAGAAGTGCTGCTGCAACTTTCAAGTCTCTCTCTGGAGTTGCTAACAAAGTTAAACTTGCATACACAATGCTCACACTTCCTGCTTGGCGTGGTTTAAATATAACTGTAAACTACTTCTCTACAAAGTTCATGAAGAATGCGGCTGGTTGCCCAAGTTTGCCAGAGCATATGAAGGTCCAAGTTTCCCCCATCAATGAGCTTCCATGCTATTCCGAAGGAGATCAAGATATGCTTGAAAATGAAGGTGACTGGGAGTATAATCGAGAACGTGAAGAAATTTGTGGTTTTCGAGTGTATGGATCAATGAAAGAAGTTTCAAATGAAGTTCCTCAAAAGTTAATGGATTATCAGACAGGTACAGATGGAAGACCTCCTCACGTGTTGCGTGGATGTGATAAGGAGCTTGAGACCAATGAACAAGTGCCACCTTCTTCATGTACTCCGTCTTATATTGATGTGGGTATGTCTTATGACTTGTGTGCATGTGATGAAGGACTCGAGAATGATGAAAGAGAGGCAGCTTCGTGTGGTCAGTCTTGCATTGTAGCAGGTACATCTAGAACTGAAATTGTCATTGATGACGAAGAGGAAAACCAATTAGAAGGGAGTAGTATGAACTTGCAGGAGCAACCAGGTAGGGAGAATTTAACATCAGGAATAGCTTCTGAAATCAGTAAAGTTTCAAGGTGGAACAATGGCTGGGTTCCAACTGTTGAGTATGAGGTTATCGATGTGTCTACCCCGTCTCCAGACTGCCGAACAAGTTCGCATAGATTCAAGAGAAGAGTTACTTCCGGTAAGTCTGAGATGATTGACTTGACTAAATCTCCTACATTTATTCAATTGTAG

Coding sequence (CDS)

ATGGCTTCTTTTCATGCTATCTCTTGGCCTCTGCTTGCCCTCGTTTCAAAGGCCATACCTATATCGGTGAACCCGAAGCGCAGAATCAGACAACACAATGGTGAGATTAGATGCGGTGCTTGGCGTACTAAGAGGAAGAGACCTTGGGAGATGGTCTTGTGCATTTATGGCTTCCCTACTAATGTTTCTGCTCTTCAGTTTGAATGGGCGTGGCAGCATCCTAATGAGTCACTGGCTGTAAGAAGTGCTGCTGCAACTTTCAAGTCTCTCTCTGGAGTTGCTAACAAAGTTAAACTTGCATACACAATGCTCACACTTCCTGCTTGGCGTGGTTTAAATATAACTGTAAACTACTTCTCTACAAAGTTCATGAAGAATGCGGCTGGTTGCCCAAGTTTGCCAGAGCATATGAAGGTCCAAGTTTCCCCCATCAATGAGCTTCCATGCTATTCCGAAGGAGATCAAGATATGCTTGAAAATGAAGGTGACTGGGAGTATAATCGAGAACGTGAAGAAATTTGTGGTTTTCGAGTGTATGGATCAATGAAAGAAGTTTCAAATGAAGTTCCTCAAAAGTTAATGGATTATCAGACAGGTACAGATGGAAGACCTCCTCACGTGTTGCGTGGATGTGATAAGGAGCTTGAGACCAATGAACAAGTGCCACCTTCTTCATGTACTCCGTCTTATATTGATGTGGGTATGTCTTATGACTTGTGTGCATGTGATGAAGGACTCGAGAATGATGAAAGAGAGGCAGCTTCGTGTGGTCAGTCTTGCATTGTAGCAGGTACATCTAGAACTGAAATTGTCATTGATGACGAAGAGGAAAACCAATTAGAAGGGAGTAGTATGAACTTGCAGGAGCAACCAGGTAGGGAGAATTTAACATCAGGAATAGCTTCTGAAATCAGTAAAGTTTCAAGGTGGAACAATGGCTGGGTTCCAACTGTTGAGTATGAGGTTATCGATGTGTCTACCCCGTCTCCAGACTGCCGAACAAGTTCGCATAGATTCAAGAGAAGAGTTACTTCCGGTAAGTCTGAGATGATTGACTTGACTAAATCTCCTACATTTATTCAATTGTAG

Protein sequence

MASFHAISWPLLALVSKAIPISVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCIVAGTSRTEIVIDDEEENQLEGSSMNLQEQPGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL

Homology

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BLAST of CsaV3_1G036670 vs. NCBI nr
Match: XP_004153269.1 (PREDICTED: structure-specific endonuclease subunit SLX1 homolog [Cucumis sativus] >KGN65856.1 hypothetical protein Csa_1G533630 [Cucumis sativus])

HSP 1 Score: 708.4 bits (1827), Expect = 1.3e-200
Identity = 341/344 (99.13%), Postives = 342/344 (99.42%), Query Frame = 0


Query: 19  IPISVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESL 78
           I  +VNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESL
Sbjct: 52  IGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESL 111

Query: 79  AVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMK 138
           AVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMK
Sbjct: 112 AVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMK 171

Query: 139 VQVSPINELPCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQT 198
           VQVSPINELPCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQT
Sbjct: 172 VQVSPINELPCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQT 231

Query: 199 GTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQ 258
           GTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQ
Sbjct: 232 GTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQ 291

Query: 259 SCIVAGTSRTEIVIDDEEENQLEGSSMNLQEQPGRENLTSGIASEISKVSRWNNGWVPTV 318
           SCIVAGTSRTEIVIDDEEENQLEGSSMNLQEQPGRENLTSGIASEISKVSRWNNGWVPTV
Sbjct: 292 SCIVAGTSRTEIVIDDEEENQLEGSSMNLQEQPGRENLTSGIASEISKVSRWNNGWVPTV 351

Query: 319 EYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL 363
           EYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL
Sbjct: 352 EYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL 395

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BLAST of CsaV3_1G036670 vs. NCBI nr
Match: XP_008457313.1 (PREDICTED: uncharacterized protein LOC103497035 [Cucumis melo])

HSP 1 Score: 662.5 bits (1708), Expect = 8.0e-187
Identity = 321/344 (93.31%), Postives = 330/344 (95.93%), Query Frame = 0


Query: 19  IPISVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESL 78
           I  +VNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESL
Sbjct: 58  IGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESL 117

Query: 79  AVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMK 138
           AVRSAAATFKSLSGVANKVKLAYTMLTLPAW GLNITVNYFSTKFMKNAAGCPSLPEHMK
Sbjct: 118 AVRSAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMK 177

Query: 139 VQVSPINELPCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQT 198
           VQVSPI+ELPCYSEGDQ +LENE DWEY+RE EEIC F+VYGSMKEVSNEVPQKLMDYQT
Sbjct: 178 VQVSPIDELPCYSEGDQGVLENEDDWEYDRESEEICSFQVYGSMKEVSNEVPQKLMDYQT 237

Query: 199 GTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQ 258
           GTDGRPP VLRGCDKELETNEQVPPSSCTPSY+DVGMSYDLCACDEGLENDEREAASCGQ
Sbjct: 238 GTDGRPPPVLRGCDKELETNEQVPPSSCTPSYVDVGMSYDLCACDEGLENDEREAASCGQ 297

Query: 259 SCIVAGTSRTEIVIDDEEENQLEGSSMNLQEQPGRENLTSGIASEISKVSRWNNGWVPTV 318
           SC VAGTSRTEI+IDD EENQ EGS MNLQEQPGR+NLTSGIASEISKVSR +NG VPTV
Sbjct: 298 SCTVAGTSRTEIIIDDGEENQFEGSGMNLQEQPGRKNLTSGIASEISKVSRCSNGLVPTV 357

Query: 319 EYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL 363
           EYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL
Sbjct: 358 EYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL 401

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BLAST of CsaV3_1G036670 vs. NCBI nr
Match: XP_023519404.1 (uncharacterized protein LOC111782823 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023519405.1 uncharacterized protein LOC111782823 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 501.9 bits (1291), Expect = 1.8e-138
Identity = 252/325 (77.54%), Postives = 272/325 (83.69%), Query Frame = 0


Query: 19  IPISVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESL 78
           I  +VNPKRRIRQHNGEIRCGAWRTKRKRPWEMV CIYGFPTNVSALQFEWAWQHPNESL
Sbjct: 55  IGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESL 114

Query: 79  AVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMK 138
           AVRSAAATFKSLSG+ANK+KLAYTMLTLPAW  LNITVNYFSTK+M NAAGCPSLP HM+
Sbjct: 115 AVRSAAATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMR 174

Query: 139 VQVSPINELPCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQT 198
           VQVSPI+ELPCY EGD+ +LENE DWEYNRE EE C  RVYG M EV NE+PQ LMDYQT
Sbjct: 175 VQVSPIDELPCYFEGDRRVLENEDDWEYNREYEEFCSSRVYGLMTEVPNEIPQNLMDYQT 234

Query: 199 GTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQ 258
           GTDGR PH LRG D+ELE NEQVP SSCTPSYIDVG+SY+L  C      DE+E   C Q
Sbjct: 235 GTDGR-PHELRGSDEELEDNEQVPHSSCTPSYIDVGVSYELRGC------DEQEPGLCAQ 294

Query: 259 SCIVAGTSRTEIVIDDEEENQLEGSSMNLQEQPGRENLTSGIASEISKVSRWNNGWVPTV 318
            CIV G  RTEI+IDD EENQLEGS M LQ+QPGR+   SGIA+EISKVS      +P V
Sbjct: 295 PCIVEG--RTEIIIDDGEENQLEGSGMKLQQQPGRKKNLSGIATEISKVSY----GLPPV 354

Query: 319 EYEVIDVSTPSPDCRTSSHRFKRRV 344
           E EVIDVSTPSPDCRTSS++FKRRV
Sbjct: 355 ENEVIDVSTPSPDCRTSSYKFKRRV 366

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BLAST of CsaV3_1G036670 vs. NCBI nr
Match: XP_023519403.1 (uncharacterized protein LOC111782823 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 501.9 bits (1291), Expect = 1.8e-138
Identity = 252/325 (77.54%), Postives = 272/325 (83.69%), Query Frame = 0


Query: 19  IPISVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESL 78
           I  +VNPKRRIRQHNGEIRCGAWRTKRKRPWEMV CIYGFPTNVSALQFEWAWQHPNESL
Sbjct: 55  IGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESL 114

Query: 79  AVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMK 138
           AVRSAAATFKSLSG+ANK+KLAYTMLTLPAW  LNITVNYFSTK+M NAAGCPSLP HM+
Sbjct: 115 AVRSAAATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMR 174

Query: 139 VQVSPINELPCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQT 198
           VQVSPI+ELPCY EGD+ +LENE DWEYNRE EE C  RVYG M EV NE+PQ LMDYQT
Sbjct: 175 VQVSPIDELPCYFEGDRRVLENEDDWEYNREYEEFCSSRVYGLMTEVPNEIPQNLMDYQT 234

Query: 199 GTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQ 258
           GTDGR PH LRG D+ELE NEQVP SSCTPSYIDVG+SY+L  C      DE+E   C Q
Sbjct: 235 GTDGR-PHELRGSDEELEDNEQVPHSSCTPSYIDVGVSYELRGC------DEQEPGLCAQ 294

Query: 259 SCIVAGTSRTEIVIDDEEENQLEGSSMNLQEQPGRENLTSGIASEISKVSRWNNGWVPTV 318
            CIV G  RTEI+IDD EENQLEGS M LQ+QPGR+   SGIA+EISKVS      +P V
Sbjct: 295 PCIVEG--RTEIIIDDGEENQLEGSGMKLQQQPGRKKNLSGIATEISKVSY----GLPPV 354

Query: 319 EYEVIDVSTPSPDCRTSSHRFKRRV 344
           E EVIDVSTPSPDCRTSS++FKRRV
Sbjct: 355 ENEVIDVSTPSPDCRTSSYKFKRRV 366

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BLAST of CsaV3_1G036670 vs. NCBI nr
Match: XP_022970652.1 (uncharacterized protein LOC111469571 isoform X2 [Cucurbita maxima])

HSP 1 Score: 496.5 bits (1277), Expect = 7.6e-137
Identity = 247/325 (76.00%), Postives = 272/325 (83.69%), Query Frame = 0


Query: 19  IPISVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESL 78
           I  +VNPKRRIRQHNGEIRCGAWRTKRKRPWEMV CIYGFPTNVSALQFEWAWQHPNESL
Sbjct: 55  IGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESL 114

Query: 79  AVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMK 138
           AVRSAAATFKSLSG+ANK+KLAYTMLTLPAW  LNITVNYFSTK+M NAAGCPSLP HM+
Sbjct: 115 AVRSAAATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMR 174

Query: 139 VQVSPINELPCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQT 198
           VQ+SPI+ELPCYSEGD+ +LENE DWEYN+E EE+C  +V+G M EV NE+PQ LMDY T
Sbjct: 175 VQISPIDELPCYSEGDRCVLENENDWEYNKEYEEVCSSQVHGLMTEVPNEIPQTLMDYST 234

Query: 199 GTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQ 258
           GTDGR PH LRG D+EL+ NEQVP SSCTPSYIDVG+SYDL  C      DE+E A C Q
Sbjct: 235 GTDGR-PHELRGSDEELDDNEQVPHSSCTPSYIDVGVSYDLRGC------DEQEPALCAQ 294

Query: 259 SCIVAGTSRTEIVIDDEEENQLEGSSMNLQEQPGRENLTSGIASEISKVSRWNNGWVPTV 318
            C V G   TEI+IDD EENQLEGS M LQ+QPGR+   SGIA+EISKVS      +P V
Sbjct: 295 PCTVEGW--TEIIIDDGEENQLEGSGMKLQQQPGRKKNLSGIATEISKVSY----GLPPV 354

Query: 319 EYEVIDVSTPSPDCRTSSHRFKRRV 344
           EYEVIDVSTPSP CRTSSH+FKRR+
Sbjct: 355 EYEVIDVSTPSPVCRTSSHKFKRRL 366

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BLAST of CsaV3_1G036670 vs. TAIR10
Match: AT2G30350.2 (Excinuclease ABC, C subunit, N-terminal)

HSP 1 Score: 208.0 bits (528), Expect = 9.8e-54
Identity = 96/136 (70.59%), Postives = 111/136 (81.62%), Query Frame = 0


Query: 19  IPISVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESL 78
           I  +VNP+RRIRQHNGEI  GAWRTK+KRPWEMVLCIYGFPTNVSALQFEWAWQHP ES+
Sbjct: 46  IGFTVNPRRRIRQHNGEITSGAWRTKKKRPWEMVLCIYGFPTNVSALQFEWAWQHPRESV 105

Query: 79  AVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMK 138
           AVR AAA FKS SGVA+K+KL YTML LPAW  LN+TVNYFS+K+  +    PSLP HMK
Sbjct: 106 AVREAAAAFKSFSGVASKIKLVYTMLNLPAWNSLNLTVNYFSSKYAHHGGKSPSLPLHMK 165

Query: 139 VQVSPINELPCYSEGD 155
           VQV  + +L  +++ D
Sbjct: 166 VQVCAMEDLQYFTKVD 181

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BLAST of CsaV3_1G036670 vs. TAIR10
Match: AT5G43210.1 (Excinuclease ABC, C subunit, N-terminal)

HSP 1 Score: 46.6 bits (109), Expect = 3.8e-05
Identity = 26/71 (36.62%), Postives = 35/71 (49.30%), Query Frame = 0


Query: 8   SWPLLALVSKAIP------ISVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTN 67
           SW +  ++S   P      I+ +  RR++QHNGEIR GA  +   RPW     I GF   
Sbjct: 53  SWSVYLILSTTEPIKTYVGITTDFSRRLKQHNGEIRGGAKASSAGRPWLCACIITGFTCL 112

Query: 68  VSALQFEWAWQ 73
             A  FE  W+
Sbjct: 113 SQASSFESKWK 123

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BLAST of CsaV3_1G036670 vs. Swiss-Prot
Match: sp|Q8BX32|SLX1_MOUSE (Structure-specific endonuclease subunit SLX1 OS=Mus musculus OX=10090 GN=Slx1b PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.3e-22
Identity = 55/145 (37.93%), Postives = 80/145 (55.17%), Query Frame = 0


Query: 19  IPISVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNES 78
           +  +VNP RR+RQHN G  + GAWRT  + PW+MVL I+GFP+ V+AL+FEWAWQHP  S
Sbjct: 29  VGFTVNPARRVRQHNAGRKKGGAWRTSGRGPWDMVLIIHGFPSAVAALRFEWAWQHPQAS 88

Query: 79  LAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHM 138
             +       +S +  A  +++   ML +P W  L +T+ +    F      CP+ P HM
Sbjct: 89  RRLTHVGPRLRSEAAFAFHLRVLAHMLRVPPWVRLPLTLRWLRPDFRHEL--CPAPPAHM 148

Query: 139 KVQVSP------INELPCYSEGDQD 157
            +   P      + + P  SE D +
Sbjct: 149 PIAFGPPPPQPLVPKRPAVSEADSE 171

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BLAST of CsaV3_1G036670 vs. Swiss-Prot
Match: sp|Q5PQP5|SLX1_RAT (Structure-specific endonuclease subunit SLX1 OS=Rattus norvegicus OX=10116 GN=Slx1b PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.2e-21
Identity = 54/145 (37.24%), Postives = 79/145 (54.48%), Query Frame = 0


Query: 19  IPISVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNES 78
           +  +VNP RR+RQHN G  + GAWRT  + PW+MVL ++GFP+ V+AL+FEWAWQHP  S
Sbjct: 29  VGFTVNPARRVRQHNAGRKKGGAWRTSGRGPWDMVLILHGFPSAVAALRFEWAWQHPQAS 88

Query: 79  LAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHM 138
             +       +S +     +++   ML +P W  L +TV +    F      CP+ P HM
Sbjct: 89  RRLTHVGPRLRSEASFTFHLRVLAHMLRVPPWVRLPLTVRWLRPDFRHEL--CPAPPPHM 148

Query: 139 KVQVSP------INELPCYSEGDQD 157
            +   P      + + P  SE D +
Sbjct: 149 PIAFGPPPPQPLVPKRPAASEADSE 171

[Close]

BLAST of CsaV3_1G036670 vs. Swiss-Prot
Match: sp|Q5CT62|SLX1_CRYPI (Structure-specific endonuclease subunit SLX1 homolog OS=Cryptosporidium parvum (strain Iowa II) OX=353152 GN=cgd2_4280 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.3e-18
Identity = 76/281 (27.05%), Postives = 112/281 (39.86%), Query Frame = 0


Query: 19  IPISVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESL 78
           I  SVNP RR+RQHNGEI+ GA +TK   PW + +C+ GFP  V+AL+FEWAWQHPN   
Sbjct: 24  IGYSVNPCRRLRQHNGEIKKGAKKTKSGVPWNLGICVGGFPDRVAALRFEWAWQHPNICK 83

Query: 79  AVRSAAATFKSLS----------------GVANKVKLAYTMLTLPAWRGLNITVNYFSTK 138
             R    ++K +                  +  +V +   M TL  W+ +N+TV  F  +
Sbjct: 84  VTRDNIESWKIVKTKKTSENKRILNKRQWSIQQRVSILLCMTTLEPWKNMNLTVFVFKDE 143

Query: 139 FMKNAAGCPSLPEHMKVQVSPINELPCYSEGDQDMLENEGDWEYNREREEICGFRVYGSM 198
                     +    K+++SP    P     D  ++                 F  +G  
Sbjct: 144 LENTIK--EVIEGIKKIKISPNFTSPNILNKDYLLM-----------------FLYFGED 203

Query: 199 KEVSNEVPQKLMDYQTGTDGRPPHVLRGCDKELETNEQV-PPSSCTPSYIDVGMSYDLCA 258
                 +     DY+T  + + P      D  +E N  V  P           +   LC 
Sbjct: 204 SFYEKGIKFLRCDYETFKEFQKPSFDCDSDSNIEDNSNVFNPEEIISHEDSFSIKCFLCQ 263

Query: 259 CDEGLENDEREAASCGQ-----SCIV---AGTSRTEIVIDD 275
            D G+  +  E   C +     SCI       +  E VID+
Sbjct: 264 KDIGIGRNYLEFPCCTEIKVHLSCIQLWGESNNHLETVIDE 285

[Close]

BLAST of CsaV3_1G036670 vs. Swiss-Prot
Match: sp|P0CN81|SLX1_CRYNB (Structure-specific endonuclease subunit SLX1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=SLX1 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.9e-18
Identity = 53/144 (36.81%), Postives = 81/144 (56.25%), Query Frame = 0


Query: 24  NPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNES--LAVR 83
           +P RRIRQHNGE++ GAW T R RPWEM + +YGFP+ ++ALQFEWAWQ P  S  L +R
Sbjct: 52  DPPRRIRQHNGELKQGAWSTSRHRPWEMQMIVYGFPSKLAALQFEWAWQKPELSRHLRIR 111

Query: 84  SAAATFKSL-------SGVANKVKLAYTMLTLPAWRGLNITVNYFS------TKFMKNAA 143
                +  +       + V  KV +AY +++L  +  L + V +F+       + +   A
Sbjct: 112 GEDQEYYHIFTKDARRNWVERKVCVAYALISLTPFNRLPLHVRFFNHETHGIWQSIHEQA 171

Query: 144 GCPSLPEHMKVQVSPINELPCYSE 153
           G  ++ +  K +  P+N L   S+
Sbjct: 172 GVNTI-QRGKSRAKPVNPLHLLSQ 194

[Close]

BLAST of CsaV3_1G036670 vs. Swiss-Prot
Match: sp|P0CN80|SLX1_CRYNJ (Structure-specific endonuclease subunit SLX1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=SLX1 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.9e-18
Identity = 53/144 (36.81%), Postives = 81/144 (56.25%), Query Frame = 0


Query: 24  NPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNES--LAVR 83
           +P RRIRQHNGE++ GAW T R RPWEM + +YGFP+ ++ALQFEWAWQ P  S  L +R
Sbjct: 52  DPPRRIRQHNGELKQGAWSTSRHRPWEMQMIVYGFPSKLAALQFEWAWQKPELSRHLRIR 111

Query: 84  SAAATFKSL-------SGVANKVKLAYTMLTLPAWRGLNITVNYFS------TKFMKNAA 143
                +  +       + V  KV +AY +++L  +  L + V +F+       + +   A
Sbjct: 112 GEDQEYYHIFTKDARRNWVERKVCVAYALISLTPFNRLPLHVRFFNHETHGIWQSIHEQA 171

Query: 144 GCPSLPEHMKVQVSPINELPCYSE 153
           G  ++ +  K +  P+N L   S+
Sbjct: 172 GVNTI-QRGKSRAKPVNPLHLLSQ 194

[Close]

BLAST of CsaV3_1G036670 vs. TrEMBL
Match: tr|A0A0A0M0Y6|A0A0A0M0Y6_CUCSA (Structure-specific endonuclease subunit SLX1 homolog OS=Cucumis sativus OX=3659 GN=Csa_1G533630 PE=3 SV=1)

HSP 1 Score: 708.4 bits (1827), Expect = 8.5e-201
Identity = 341/344 (99.13%), Postives = 342/344 (99.42%), Query Frame = 0


Query: 19  IPISVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESL 78
           I  +VNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESL
Sbjct: 52  IGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESL 111

Query: 79  AVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMK 138
           AVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMK
Sbjct: 112 AVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMK 171

Query: 139 VQVSPINELPCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQT 198
           VQVSPINELPCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQT
Sbjct: 172 VQVSPINELPCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQT 231

Query: 199 GTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQ 258
           GTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQ
Sbjct: 232 GTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQ 291

Query: 259 SCIVAGTSRTEIVIDDEEENQLEGSSMNLQEQPGRENLTSGIASEISKVSRWNNGWVPTV 318
           SCIVAGTSRTEIVIDDEEENQLEGSSMNLQEQPGRENLTSGIASEISKVSRWNNGWVPTV
Sbjct: 292 SCIVAGTSRTEIVIDDEEENQLEGSSMNLQEQPGRENLTSGIASEISKVSRWNNGWVPTV 351

Query: 319 EYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL 363
           EYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL
Sbjct: 352 EYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL 395

[Close]

BLAST of CsaV3_1G036670 vs. TrEMBL
Match: tr|A0A1S3C574|A0A1S3C574_CUCME (Structure-specific endonuclease subunit SLX1 homolog OS=Cucumis melo OX=3656 GN=LOC103497035 PE=3 SV=1)

HSP 1 Score: 662.5 bits (1708), Expect = 5.3e-187
Identity = 321/344 (93.31%), Postives = 330/344 (95.93%), Query Frame = 0


Query: 19  IPISVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESL 78
           I  +VNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESL
Sbjct: 58  IGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESL 117

Query: 79  AVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMK 138
           AVRSAAATFKSLSGVANKVKLAYTMLTLPAW GLNITVNYFSTKFMKNAAGCPSLPEHMK
Sbjct: 118 AVRSAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMK 177

Query: 139 VQVSPINELPCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQT 198
           VQVSPI+ELPCYSEGDQ +LENE DWEY+RE EEIC F+VYGSMKEVSNEVPQKLMDYQT
Sbjct: 178 VQVSPIDELPCYSEGDQGVLENEDDWEYDRESEEICSFQVYGSMKEVSNEVPQKLMDYQT 237

Query: 199 GTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQ 258
           GTDGRPP VLRGCDKELETNEQVPPSSCTPSY+DVGMSYDLCACDEGLENDEREAASCGQ
Sbjct: 238 GTDGRPPPVLRGCDKELETNEQVPPSSCTPSYVDVGMSYDLCACDEGLENDEREAASCGQ 297

Query: 259 SCIVAGTSRTEIVIDDEEENQLEGSSMNLQEQPGRENLTSGIASEISKVSRWNNGWVPTV 318
           SC VAGTSRTEI+IDD EENQ EGS MNLQEQPGR+NLTSGIASEISKVSR +NG VPTV
Sbjct: 298 SCTVAGTSRTEIIIDDGEENQFEGSGMNLQEQPGRKNLTSGIASEISKVSRCSNGLVPTV 357

Query: 319 EYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL 363
           EYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL
Sbjct: 358 EYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL 401

[Close]

BLAST of CsaV3_1G036670 vs. TrEMBL
Match: tr|A0A2I4FVQ1|A0A2I4FVQ1_9ROSI (Structure-specific endonuclease subunit SLX1 homolog OS=Juglans regia OX=51240 GN=LOC109002431 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.2e-74
Identity = 167/346 (48.27%), Postives = 210/346 (60.69%), Query Frame = 0


Query: 19  IPISVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESL 78
           I  +VNP+RRIRQHNGEI  GAWRTK+KRPWEMVLCIYGFP+NVSALQFEWAWQHPNESL
Sbjct: 55  IGFTVNPRRRIRQHNGEIVSGAWRTKKKRPWEMVLCIYGFPSNVSALQFEWAWQHPNESL 114

Query: 79  AVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMK 138
           AVR AAA+FKSLSG+ANK+KLAYTMLTLPAW+ LNITVNYFSTK+  + AGCPSLPEHMK
Sbjct: 115 AVRKAAASFKSLSGIANKIKLAYTMLTLPAWQSLNITVNYFSTKYTNHYAGCPSLPEHMK 174

Query: 139 VQVSPINELPCYSE-GDQDMLENEGDWEYNREREEICGFRVYGSMKE-VSNEVPQKLMDY 198
           VQV P++ELPCYSE  D  + ENE +W    E E        G ++E + N + +   D 
Sbjct: 175 VQVRPMDELPCYSELIDVSLSENEDEWNDKEECEGGTSSTASGFVQETIPNSMVRNSSDN 234

Query: 199 QTGTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASC 258
           +     +    L G   ELE +   P S                          + A + 
Sbjct: 235 EINIIDKTAEFLYGRGNELEEDCAQPSSFI------------------------KSAMTT 294

Query: 259 GQSCIVAGTSRTEIVIDDEEENQLEGSSMNLQEQPGRENLTSGIASEISKVSRWNNGWVP 318
             S   +  S  E+    EE      +S+ LQ       +T+G  ++       ++ +  
Sbjct: 295 SSSIATSSFSLEEVA---EEREMDIAASVELQ----LPVVTAGYTAQPP-----SSSYAA 354

Query: 319 TVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL 363
               E+ID+STPSPDCRTS    KRR+++   ++IDLTKSP F+QL
Sbjct: 355 PQYVEIIDISTPSPDCRTSLCGKKRRISTICPQIIDLTKSPAFVQL 364

[Close]

BLAST of CsaV3_1G036670 vs. TrEMBL
Match: tr|A0A2I4FLN2|A0A2I4FLN2_9ROSI (Structure-specific endonuclease subunit SLX1 homolog OS=Juglans regia OX=51240 GN=LOC109000158 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 2.3e-73
Identity = 166/346 (47.98%), Postives = 208/346 (60.12%), Query Frame = 0


Query: 19  IPISVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESL 78
           I  +VNP+RRIRQHNGEI  GAWRTK+KRPWEMVLCIYGFP+NVSALQFEWAWQHPNESL
Sbjct: 55  IGFTVNPRRRIRQHNGEIVSGAWRTKKKRPWEMVLCIYGFPSNVSALQFEWAWQHPNESL 114

Query: 79  AVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMK 138
           AVR AAA+FKSLSG+ANK+KLAYTMLTLPAW+ LNITVNYFSTK+  + AGCPSLPEHMK
Sbjct: 115 AVRKAAASFKSLSGIANKIKLAYTMLTLPAWQSLNITVNYFSTKYTNHYAGCPSLPEHMK 174

Query: 139 VQVSPINELPCYSE-GDQDMLENEGDWEYNREREEICGFRVYGSMKE-VSNEVPQKLMDY 198
           VQV P++ELPCYSE  D  + ENE  W    E E        G ++E + +   +   D 
Sbjct: 175 VQVRPMDELPCYSELIDVSLSENEDKWNDKEECEGGTSSTASGFVQETIPDSTVRNSSDN 234

Query: 199 QTGTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASC 258
           +     +    L G   ELE +   P S                          + A + 
Sbjct: 235 EINIIDKTAEFLYGRGNELEEDCAQPSSFI------------------------KSAMTT 294

Query: 259 GQSCIVAGTSRTEIVIDDEEENQLEGSSMNLQEQPGRENLTSGIASEISKVSRWNNGWVP 318
             S   +  S  E+    EE      +S+ LQ       +T+G  ++       ++ +  
Sbjct: 295 SSSIATSSFSLEEVA---EERYMDIAASVELQ----LPVVTAGYTAQPP-----SSSYAA 354

Query: 319 TVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL 363
               E+ID+STPSPDCRTS    KRR+++   ++IDLTKSP F+QL
Sbjct: 355 PQYVEIIDISTPSPDCRTSLCGKKRRISTICPQIIDLTKSPAFVQL 364

[Close]

BLAST of CsaV3_1G036670 vs. TrEMBL
Match: tr|I1LLV5|I1LLV5_SOYBN (Structure-specific endonuclease subunit SLX1 homolog OS=Glycine max OX=3847 GN=100801307 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 3.3e-72
Identity = 165/346 (47.69%), Postives = 216/346 (62.43%), Query Frame = 0


Query: 19  IPISVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESL 78
           I  +VNP+RRIRQHNGEI CGAWRTK++RPWEMVLCIYGFPTNVSALQFEWAWQHP ESL
Sbjct: 54  IGFTVNPRRRIRQHNGEIGCGAWRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPVESL 113

Query: 79  AVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMK 138
           AVR AA  FKSLSG+ANK+KLAYTMLTLP+W+ +NITVN+FSTK+MK+ AGCPSLP HMK
Sbjct: 114 AVRKAAVEFKSLSGIANKIKLAYTMLTLPSWQSMNITVNFFSTKYMKHCAGCPSLPVHMK 173

Query: 139 VQVSPINELPCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQT 198
            +   ++ELPCY++G   + ENE D   +  + +       GS+ +VS+++       Q 
Sbjct: 174 TKFGSLDELPCYNKGIDGLSENEDD-TIDEVQFDDNNISTSGSVPDVSDDLVTP-DSPQN 233

Query: 199 GTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQ 258
             DG         +KE E  E  PP         +G S+   A  E  +          +
Sbjct: 234 PNDGDKISEAFEWNKESEARE--PP---------LGNSF---ASQEQSQLFSSTTPLTMK 293

Query: 259 SCIVAGTSRTEIVIDDEEENQLEGSSMNL-QEQPGRENLTSGIASEISKVSRWNNGWVPT 318
           S       R EI+ +D+  + +  S  +L Q +P +   T+ +A++   V R    +V  
Sbjct: 294 SSSTTSLQRAEIIEEDDFMSVMNKSDADLSQPEPEQSGATTLVANKNRDVGR---TFVVP 353

Query: 319 VEYEVIDVSTPSPDCRTSSHRFKRRVTSG-KSEMIDLTKSPTFIQL 363
            E E+ID+STPSP CR+   R KRRV+S   ++ IDLT SP FI+L
Sbjct: 354 HETEIIDLSTPSPSCRSVLDRKKRRVSSSVGTDFIDLTNSPNFIEL 380

The following BLAST results are available for this feature:

BLAST of CsaV3_1G036670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004153269.1	1.3e-200	99.13	PREDICTED: structure-specific endonuclease subunit SLX1 homolog [Cucumis sativus...	[more]
XP_008457313.1	8.0e-187	93.31	PREDICTED: uncharacterized protein LOC103497035 [Cucumis melo]	[more]
XP_023519404.1	1.8e-138	77.54	uncharacterized protein LOC111782823 isoform X2 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_023519403.1	1.8e-138	77.54	uncharacterized protein LOC111782823 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022970652.1	7.6e-137	76.00	uncharacterized protein LOC111469571 isoform X2 [Cucurbita maxima]	[more]

BLAST of CsaV3_1G036670 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G30350.2	9.8e-54	70.59	Excinuclease ABC, C subunit, N-terminal	[more]
AT5G43210.1	3.8e-05	36.62	Excinuclease ABC, C subunit, N-terminal	[more]

BLAST of CsaV3_1G036670 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8BX32\|SLX1_MOUSE	4.3e-22	37.93	Structure-specific endonuclease subunit SLX1 OS=Mus musculus OX=10090 GN=Slx1b P...	[more]
sp\|Q5PQP5\|SLX1_RAT	1.2e-21	37.24	Structure-specific endonuclease subunit SLX1 OS=Rattus norvegicus OX=10116 GN=Sl...	[more]
sp\|Q5CT62\|SLX1_CRYPI	1.3e-18	27.05	Structure-specific endonuclease subunit SLX1 homolog OS=Cryptosporidium parvum (...	[more]
sp\|P0CN81\|SLX1_CRYNB	2.9e-18	36.81	Structure-specific endonuclease subunit SLX1 OS=Cryptococcus neoformans var. neo...	[more]
sp\|P0CN80\|SLX1_CRYNJ	2.9e-18	36.81	Structure-specific endonuclease subunit SLX1 OS=Cryptococcus neoformans var. neo...	[more]

BLAST of CsaV3_1G036670 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M0Y6\|A0A0A0M0Y6_CUCSA	8.5e-201	99.13	Structure-specific endonuclease subunit SLX1 homolog OS=Cucumis sativus OX=3659 ...	[more]
tr\|A0A1S3C574\|A0A1S3C574_CUCME	5.3e-187	93.31	Structure-specific endonuclease subunit SLX1 homolog OS=Cucumis melo OX=3656 GN=...	[more]
tr\|A0A2I4FVQ1\|A0A2I4FVQ1_9ROSI	1.2e-74	48.27	Structure-specific endonuclease subunit SLX1 homolog OS=Juglans regia OX=51240 G...	[more]
tr\|A0A2I4FLN2\|A0A2I4FLN2_9ROSI	2.3e-73	47.98	Structure-specific endonuclease subunit SLX1 homolog OS=Juglans regia OX=51240 G...	[more]
tr\|I1LLV5\|I1LLV5_SOYBN	3.3e-72	47.69	Structure-specific endonuclease subunit SLX1 homolog OS=Glycine max OX=3847 GN=1...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR035901	GIY-YIG_endonuc_sf
IPR000305	GIY-YIG_endonuc

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006308	DNA catabolic process
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0033557	Slx1-Slx4 complex
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0017108	5'-flap endonuclease activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G036670.1	CsaV3_1G036670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000305	GIY-YIG endonuclease	PFAM	PF01541	GIY-YIG	coord: 22..75 e-value: 1.3E-7 score: 31.7
IPR035901	GIY-YIG endonuclease superfamily	GENE3D	G3DSA:3.40.1440.10		coord: 19..100 e-value: 3.4E-9 score: 38.4
None	No IPR available	PANTHER	PTHR20208	FAMILY NOT NAMED	coord: 23..340
None	No IPR available	PANTHER	PTHR20208:SF10	STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1	coord: 23..340
None	No IPR available	CDD	cd10455	GIY-YIG_SLX1	coord: 19..74 e-value: 5.63393E-37 score: 128.504

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G036670	CSPI01G24370	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G036670	Cucsa.151960	Cucumber (Gy14) v1	cgycucB230
CsaV3_1G036670	CmaCh13G000180	Cucurbita maxima (Rimu)	cmacucB0245
CsaV3_1G036670	CmoCh13G000090	Cucurbita moschata (Rifu)	cmocucB0232
CsaV3_1G036670	Carg26961	Silver-seed gourd	carcucB0362
CsaV3_1G036670	Carg07021	Silver-seed gourd	carcucB0553
CsaV3_1G036670	Cla008116	Watermelon (97103) v1	cucwmB026
CsaV3_1G036670	MELO3C020503	Melon (DHL92) v3.5.1	cucmeB025
CsaV3_1G036670	ClCG03G000240	Watermelon (Charleston Gray)	cucwcgB051
CsaV3_1G036670	Lsi02G012280	Bottle gourd (USVL1VR-Ls)	cuclsiB031
CsaV3_1G036670	MELO3C020503.2	Melon (DHL92) v3.6.1	cucmedB023
CsaV3_1G036670	Cla97C03G051050	Watermelon (97103) v2	cucwmbB042
CsaV3_1G036670	Bhi08G000365	Wax gourd	cucwgoB050

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G036670	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G036670	Cucurbita maxima (Rimu)	cmacucB0250
CsaV3_1G036670	Cucurbita maxima (Rimu)	cmacucB0512
CsaV3_1G036670	Cucurbita maxima (Rimu)	cmacucB0522
CsaV3_1G036670	Cucurbita moschata (Rifu)	cmocucB0236
CsaV3_1G036670	Cucurbita moschata (Rifu)	cmocucB0500
CsaV3_1G036670	Cucurbita pepo (Zucchini)	cpecucB0625
CsaV3_1G036670	Cucurbita pepo (Zucchini)	cpecucB0662