Cla008116 (gene) Watermelon (97103) v1

Overview
NameCla008116
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionStructure-specific endonuclease subunit slx1 (AHRD V1 *-*- F4WH92_ACREC); contains Interpro domain(s) IPR000305 Excinuclease ABC, C subunit, N-terminal
LocationChr3 : 265038 .. 266883 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAAGAGGAAAGAGAAATCGGAAATCTCTAAGACTATGGCTGTAACAGAGGAGGAGAAGGAAGATGATGAAGTTGAAGATGAAGAAGAAAGAGGCAATGAAGTGAATGGGTTCTTTTCATGCTATCTCTTGGCCTCTGCTTGCCCTCGTTTCAAAGGCCATACCTATATCGGGTTTGAATCTTTCCCACTCCATTCGAGCATTTTTCTGTTCTTTGATCCCTAAATCGGGTCTTCTAATTTTCTTTGTAAATTCCCAATTTCCGGATTCAATTCTCTGCTTCCCAATACTGGAAATTTCTTTTCCTTCCTGCATCAAGAAATGTGGGAAATGCGTAAGTCGATCTGCATTGGATTGATTGGATGACTGTTTATATGAAATATTAGATTCACAGTGAACCCGAAACGCAGAATCAGACAGCACAATGGTGAAATTAGATGCGGCGCGTGGCGTACTAAGAGGAAGAGACCTTGGGAGATGGTCTTATGCATTTATGGCTTCCCCACTAATGTCTCTGCTCTTCAGGTTACCTTTCTAGATTTTGAGCTCTAGAACTAGTTTGATTGTGCATCTTTTATACTCGATTGTCTTCTACTAGCTGAATAACACTTTGATGATTATGCACATGTTAAGATGTTAGAGTACATATTATGGCTTTTCGGGCTTGAAGAATTTACTAAAATGTGCTGCTGGTTTTCCTCTTTAGCCATTTTCTTCTTGTGACTTTCCATCAGTTCCAGAATTTGATGTTCTAACTATGGATGCAGTTTGAATGGGCGTGGCAGCATCCTATTGAGTCATTGGCTGTAAGAAGTGCTGCTGCAACTTTCAAGTCTCTCTCTGGAGTTGCTAACAAAGTTAAACTTGCATACACAATGCTCACACTTCCTGCTTGGTGTAGGTATGACGTATGAGAAAATTTATACAATTCTATTGAATTTTTCTGTTAAATGTGTTGGAAATGTTAAGACAATATTCTTGTAACTGTGAGGTTTTTGGGGCGAAACCAAAGTTTAAGTCTGATAGGGGCAATATCTTACTATTGTGATTTATGAAGGAGCCAAAAACTGATGTAATTTCAATGAAATTTGTCTGCCAAACTCTCTATTCATCTTTTTCTCCTGATCCTTGTAGTTTGAATATAACTGTAAACTACTTCTCAACAAAGTACATGAAGAATGCAGCTGGTTGCCCAAGTTTGCCAGAGCATATGAAGGTCCAAGTTTCCCCCATCGATGAGCTTCCATGCTATTCTGAAGGAGATCAACGTGTGCTTGAAAATGAAGATGATTGGGAGTATAATAGAGAATGTGAAGAAATTTGTAGTTTTCGAGTATATGGAACAATGAAAGAAGTTTTAAATGAAGTTCCTAGTACAGATAGAAGACCTCATGAATTGCGTGGATGCGATAAAGAACTCGAGGACAATGAACAAGTGCCACCTTCTTCATGTACTCCATCTTATATTGATGTGGGTATGTCTTATGACTTGCGTGGATGTGATGAAGAACTCGAGGCAGCTTCGTGTGATCAGTCTTGTATTTTAGGTATATCCAGGACCGAAATTACCATTGACGATGGAGAGGAAGACCAATCAGAAGGGAGTGGTATGAACTTGCAGCAGCAAATTGGTATGAAGAATTTAACATCAGGAATAGCTTCTGAAATCAACAAAGTTTCGAGGTGTACTAATGGGCTTCCTCCTGTTGAGTATGAGGTTATAGATGTGTCTACCCCATCTCCCGACTGCAGAACGAGTTCGCATAGATTCAAGAGAAGAGTTACTTCGGGTACGTCTGAGATTATTGACTTGACTAAATCTCCTACTTTTATCCAATTGTAG

mRNA sequence

ATGGGGAAGAGGAAAGAGAAATCGGAAATCTCTAAGACTATGGCTGTAACAGAGGAGGAGAAGGAAGATGATGAAGTTGAAGATGAAGAAGAAAGAGGCAATGAAGTGAATGGGTTCTTTTCATGCTATCTCTTGGCCTCTGCTTGCCCTCGTTTCAAAGGCCATACCTATATCGGATTCACAGTGAACCCGAAACGCAGAATCAGACAGCACAATGGTGAAATTAGATGCGGCGCGTGGCGTACTAAGAGGAAGAGACCTTGGGAGATGGTCTTATGCATTTATGGCTTCCCCACTAATGTCTCTGCTCTTCAGTTTGAATGGGCGTGGCAGCATCCTATTGAGTCATTGGCTGTAAGAAGTGCTGCTGCAACTTTCAAGTCTCTCTCTGGAGTTGCTAACAAAGTTAAACTTGCATACACAATGCTCACACTTCCTGCTTGGTGTAGTTTGAATATAACTGTAAACTACTTCTCAACAAAGTACATGAAGAATGCAGCTGGTTGCCCAAGTTTGCCAGAGCATATGAAGGTCCAAGTTTCCCCCATCGATGAGCTTCCATGCTATTCTGAAGGAGATCAACGTGTGCTTGAAAATGAAGATGATTGGGAGTATAATAGAGAATGTGAAGAAATTTGTAGTTTTCGAGTATATGGAACAATGAAAGAAGTTTTAAATGAAGTTCCTAGTACAGATAGAAGACCTCATGAATTGCGTGGATGCGATAAAGAACTCGAGGACAATGAACAAGTGCCACCTTCTTCATGTACTCCATCTTATATTGATGTGGGTATGTCTTATGACTTGCGTGGATGTGATGAAGAACTCGAGGCAGCTTCGTGTGATCAGTCTTGTATTTTAGGTATATCCAGGACCGAAATTACCATTGACGATGGAGAGGAAGACCAATCAGAAGGGAGTGGTATGAACTTGCAGCAGCAAATTGGTATGAAGAATTTAACATCAGGAATAGCTTCTGAAATCAACAAAGTTTCGAGGTGTACTAATGGGCTTCCTCCTGTTGAGTATGAGGTTATAGATGTGTCTACCCCATCTCCCGACTGCAGAACGAGTTCGCATAGATTCAAGAGAAGAGTTACTTCGGGTACGTCTGAGATTATTGACTTGACTAAATCTCCTACTTTTATCCAATTGTAG

Coding sequence (CDS)

ATGGGGAAGAGGAAAGAGAAATCGGAAATCTCTAAGACTATGGCTGTAACAGAGGAGGAGAAGGAAGATGATGAAGTTGAAGATGAAGAAGAAAGAGGCAATGAAGTGAATGGGTTCTTTTCATGCTATCTCTTGGCCTCTGCTTGCCCTCGTTTCAAAGGCCATACCTATATCGGATTCACAGTGAACCCGAAACGCAGAATCAGACAGCACAATGGTGAAATTAGATGCGGCGCGTGGCGTACTAAGAGGAAGAGACCTTGGGAGATGGTCTTATGCATTTATGGCTTCCCCACTAATGTCTCTGCTCTTCAGTTTGAATGGGCGTGGCAGCATCCTATTGAGTCATTGGCTGTAAGAAGTGCTGCTGCAACTTTCAAGTCTCTCTCTGGAGTTGCTAACAAAGTTAAACTTGCATACACAATGCTCACACTTCCTGCTTGGTGTAGTTTGAATATAACTGTAAACTACTTCTCAACAAAGTACATGAAGAATGCAGCTGGTTGCCCAAGTTTGCCAGAGCATATGAAGGTCCAAGTTTCCCCCATCGATGAGCTTCCATGCTATTCTGAAGGAGATCAACGTGTGCTTGAAAATGAAGATGATTGGGAGTATAATAGAGAATGTGAAGAAATTTGTAGTTTTCGAGTATATGGAACAATGAAAGAAGTTTTAAATGAAGTTCCTAGTACAGATAGAAGACCTCATGAATTGCGTGGATGCGATAAAGAACTCGAGGACAATGAACAAGTGCCACCTTCTTCATGTACTCCATCTTATATTGATGTGGGTATGTCTTATGACTTGCGTGGATGTGATGAAGAACTCGAGGCAGCTTCGTGTGATCAGTCTTGTATTTTAGGTATATCCAGGACCGAAATTACCATTGACGATGGAGAGGAAGACCAATCAGAAGGGAGTGGTATGAACTTGCAGCAGCAAATTGGTATGAAGAATTTAACATCAGGAATAGCTTCTGAAATCAACAAAGTTTCGAGGTGTACTAATGGGCTTCCTCCTGTTGAGTATGAGGTTATAGATGTGTCTACCCCATCTCCCGACTGCAGAACGAGTTCGCATAGATTCAAGAGAAGAGTTACTTCGGGTACGTCTGAGATTATTGACTTGACTAAATCTCCTACTTTTATCCAATTGTAG

Protein sequence

MGKRKEKSEISKTMAVTEEEKEDDEVEDEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPIESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVSPIDELPCYSEGDQRVLENEDDWEYNRECEEICSFRVYGTMKEVLNEVPSTDRRPHELRGCDKELEDNEQVPPSSCTPSYIDVGMSYDLRGCDEELEAASCDQSCILGISRTEITIDDGEEDQSEGSGMNLQQQIGMKNLTSGIASEINKVSRCTNGLPPVEYEVIDVSTPSPDCRTSSHRFKRRVTSGTSEIIDLTKSPTFIQL
Homology
[Close]
BLAST of Cla008116 vs. Swiss-Prot
Match: SLX1_MOUSE (Structure-specific endonuclease subunit SLX1 OS=Mus musculus GN=Slx1b PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.4e-29
Identity = 66/162 (40.74%), Postives = 89/162 (54.94%), Query Frame = 1 

Query: 39  FFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGF 98
           FF  YLL    PR +G  Y+GFTVNP RR+RQHN G  + GAWRT  + PW+MVL I+GF
Sbjct: 10  FFGVYLLYCQNPRHRGRVYVGFTVNPARRVRQHNAGRKKGGAWRTSGRGPWDMVLIIHGF 69

Query: 99  PTNVSALQFEWAWQHPIESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNY 158
           P+ V+AL+FEWAWQHP  S  +       +S +  A  +++   ML +P W  L +T+ +
Sbjct: 70  PSAVAALRFEWAWQHPQASRRLTHVGPRLRSEAAFAFHLRVLAHMLRVPPWVRLPLTLRW 129

Query: 159 FSTKYMKNAAGCPSLPEHMKVQVSP------IDELPCYSEGD 194
               +      CP+ P HM +   P      + + P  SE D
Sbjct: 130 LRPDFRHEL--CPAPPAHMPIAFGPPPPQPLVPKRPAVSEAD 169

[Close]
BLAST of Cla008116 vs. Swiss-Prot
Match: SLX1_RAT (Structure-specific endonuclease subunit SLX1 OS=Rattus norvegicus GN=Slx1b PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.9e-28
Identity = 65/162 (40.12%), Postives = 88/162 (54.32%), Query Frame = 1 

Query: 39  FFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGF 98
           FF  YLL    PR +G  Y+GFTVNP RR+RQHN G  + GAWRT  + PW+MVL ++GF
Sbjct: 10  FFGVYLLYCQNPRHRGRVYVGFTVNPARRVRQHNAGRKKGGAWRTSGRGPWDMVLILHGF 69

Query: 99  PTNVSALQFEWAWQHPIESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNY 158
           P+ V+AL+FEWAWQHP  S  +       +S +     +++   ML +P W  L +TV +
Sbjct: 70  PSAVAALRFEWAWQHPQASRRLTHVGPRLRSEASFTFHLRVLAHMLRVPPWVRLPLTVRW 129

Query: 159 FSTKYMKNAAGCPSLPEHMKVQVSP------IDELPCYSEGD 194
               +      CP+ P HM +   P      + + P  SE D
Sbjct: 130 LRPDFRHEL--CPAPPPHMPIAFGPPPPQPLVPKRPAASEAD 169

[Close]
BLAST of Cla008116 vs. Swiss-Prot
Match: SLX1_BOVIN (Structure-specific endonuclease subunit SLX1 OS=Bos taurus GN=SLX1A PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.5e-27
Identity = 60/145 (41.38%), Postives = 82/145 (56.55%), Query Frame = 1 

Query: 39  FFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNG-EIRCGAWRTKRKRPWEMVLCIYGF 98
           FF  YLL    PR +G  Y+GFTVNP RR++QHNG   + GAWRT  + PWEMVL ++GF
Sbjct: 6   FFGVYLLYCLNPRHRGRVYVGFTVNPARRVQQHNGGRKKGGAWRTSGRGPWEMVLIVHGF 65

Query: 99  PTNVSALQFEWAWQHPIESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNY 158
           P+ V+AL+FEWAWQHP  S  +       +  +  A  +++   ML  P W  L +T+ +
Sbjct: 66  PSAVAALRFEWAWQHPQASRRLTHVGRRLRGEATFAFHLRVLAHMLRAPPWVRLPLTLRW 125

Query: 159 FSTKYMKNAAGCPSLPEHMKVQVSP 183
               + ++   CP  P HM +   P
Sbjct: 126 LRADFRQDL--CPPPPPHMPLAFGP 148

[Close]
BLAST of Cla008116 vs. Swiss-Prot
Match: SLX1_NEMVE (Structure-specific endonuclease subunit SLX1 homolog OS=Nematostella vectensis GN=v1g174298 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.0e-26
Identity = 66/174 (37.93%), Postives = 95/174 (54.60%), Query Frame = 1 

Query: 37  NGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEI-RCGAWRTKRKRPWEMVLCIY 96
           +GF   YLL    P+FKGHTYIG+TVNP RRI+QHNG + + GA++T RK+PW M+L ++
Sbjct: 8   SGFHGVYLLYCVNPKFKGHTYIGYTVNPNRRIKQHNGGVDKGGAYKTSRKKPWNMILIVH 67

Query: 97  GFPTNVSALQFEWAWQHPIESLAVRSAAATFKSLS-GVANKVKLAYTMLTLPAWCSLNIT 156
           GFP ++ ALQFEWAWQ P  S  ++SAA   K     V    ++   +L +  W  L + 
Sbjct: 68  GFPNDIIALQFEWAWQKPTVSRRLKSAATKKKPRERPVQYCFRILSELLRVGPWNRLPLH 127

Query: 157 VNYFSTKYMKNAAGCPSLPEHMKVQVSPIDELPCYSEGDQRVLENEDDWEYNRE 209
           + +   +Y          P HM V   P+       +  Q+ + +ED    ++E
Sbjct: 128 IRWLMREYEMEFDPRCLPPFHMTVVYGPL----VSRKAKQKAVSSEDQRPDHKE 177

[Close]
BLAST of Cla008116 vs. Swiss-Prot
Match: SLX1_XENLA (Structure-specific endonuclease subunit slx1 OS=Xenopus laevis GN=slx1a PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.0e-26
Identity = 60/154 (38.96%), Postives = 85/154 (55.19%), Query Frame = 1 

Query: 35  EVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNG-EIRCGAWRTKRKRPWEMVLC 94
           EV GF+  YLL    P++KG  YIGFTVNP+RRI+QHNG + + GAW+T  + PW+MVL 
Sbjct: 4   EVEGFYGVYLLFCTNPKYKGRIYIGFTVNPERRIQQHNGGKHKGGAWKTSGRGPWDMVLI 63

Query: 95  IYGFPTNVSALQFEWAWQHPIESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNI 154
           ++GFP +++AL+FEWAWQHP  S  +       K  S     + +   ML +  W  L +
Sbjct: 64  VHGFPNDIAALRFEWAWQHPHVSRRLTHVPRKTKKQSSFDFHLLVLCHMLRVAPWNRLPL 123

Query: 155 TVNYFSTKYMKNAAGCPSLPEHMKVQVSPIDELP 188
           T+ +   +Y +        P HM +    +   P
Sbjct: 124 TLRWLRQEYRRELPLLLQPPLHMPLAFGQVRARP 157

[Close]
BLAST of Cla008116 vs. TrEMBL
Match: A0A0A0M0Y6_CUCSA (Structure-specific endonuclease subunit SLX1 homolog OS=Cucumis sativus GN=Csa_1G533630 PE=3 SV=1)

HSP 1 Score: 652.9 bits (1683), Expect = 2.4e-184
Identity = 337/401 (84.04%), Postives = 349/401 (87.03%), Query Frame = 1 

Query: 1   MGKRKEKSEISKTMAVTEEEKEDDEVEDEEERGNEVNGFFSCYLLASACPRFKGHTYIGF 60
           M KRKEK EI KT   T+EEKEDDE   EEERGNEVNGFFSCYLLASACPRFKGHTYIGF
Sbjct: 1   MRKRKEKPEICKT---TDEEKEDDE---EEERGNEVNGFFSCYLLASACPRFKGHTYIGF 60

Query: 61  TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPIESLAVR 120
           TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHP ESLAVR
Sbjct: 61  TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVR 120

Query: 121 SAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQV 180
           SAAATFKSLSGVANKVKLAYTMLTLPAW  LNITVNYFSTK+MKNAAGCPSLPEHMKVQV
Sbjct: 121 SAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMKVQV 180

Query: 181 SPIDELPCYSEGDQRVLENEDDWEYNRECEEICSFRVYGTMKEVLNEVP--------STD 240
           SPI+ELPCYSEGDQ +LENE DWEYNRE EEIC FRVYG+MKEV NEVP         TD
Sbjct: 181 SPINELPCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTD 240

Query: 241 -RRPHELRGCDKELEDNEQVPPSSCTPSYIDVGMSYDLRGCDE-----ELEAASCDQSCI 300
            R PH LRGCDKELE NEQVPPSSCTPSYIDVGMSYDL  CDE     E EAASC QSCI
Sbjct: 241 GRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCI 300

Query: 301 L-GISRTEITIDDGEEDQSEGSGMNLQQQIGMKNLTSGIASEINKVSRCTNG-LPPVEYE 360
           + G SRTEI IDD EE+Q EGS MNLQ+Q G +NLTSGIASEI+KVSR  NG +P VEYE
Sbjct: 301 VAGTSRTEIVIDDEEENQLEGSSMNLQEQPGRENLTSGIASEISKVSRWNNGWVPTVEYE 360

Query: 361 VIDVSTPSPDCRTSSHRFKRRVTSGTSEIIDLTKSPTFIQL 386
           VIDVSTPSPDCRTSSHRFKRRVTSG SE+IDLTKSPTFIQL
Sbjct: 361 VIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL 395

[Close]
BLAST of Cla008116 vs. TrEMBL
Match: A0A151UA25_CAJCA (Structure-specific endonuclease subunit SLX1 OS=Cajanus cajan GN=KK1_020383 PE=3 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 2.0e-90
Identity = 193/408 (47.30%), Postives = 255/408 (62.50%), Query Frame = 1 

Query: 1   MGKRKEKSEISKTMAVTEEEKEDDEVEDE---EERGNEVNGFFSCYLLASACPRFKGHTY 60
           M K+K  S    T+   EEE+E++   D+   ++ G+E +GF++CYLLAS  PR+KGHTY
Sbjct: 1   MRKKKVASAAHATVVKEEEEEEEEHSHDQNQNQKEGSEGDGFYACYLLASLSPRYKGHTY 60

Query: 61  IGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPIESL 120
           IGFTVNP+RRIRQHNGEI CGAWRTK++RPWEMVLCIYGFPTNVSALQFEWAWQHP+ESL
Sbjct: 61  IGFTVNPRRRIRQHNGEIGCGAWRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPVESL 120

Query: 121 AVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMK 180
           AVR AA  FKSLSG+ANK+KLAYTML LP+W S+NITVN+FSTKYMK+ AGCPSLP HMK
Sbjct: 121 AVRKAAVGFKSLSGIANKIKLAYTMLNLPSWQSMNITVNFFSTKYMKHCAGCPSLPVHMK 180

Query: 181 VQVSPIDELPCYSEGDQRVLENEDD----WEYNRECEEICSFRVYGTMKEVLNE--VPST 240
           +++  +DELPCYSE +  + ENEDD     E++       + R   ++ +V ++  +P +
Sbjct: 181 IKIGSLDELPCYSENNDSLSENEDDNIDEVEFDNN-NNNNNTRTSDSVPDVSDDFVIPDS 240

Query: 241 DRRPHELRGCDKELEDN-------------EQVPPSSCTPSYIDVGMSYDLRGCDEELEA 300
            +  +      +  E N             EQ+ P S T        S  L    E +E 
Sbjct: 241 PKNSNHRDNISETFEQNKESEARKQIFASQEQLQPFSSTTPMTMKSSSATLLPRIETIEE 300

Query: 301 ASCDQSCILGISRTEITIDDGEEDQSEGSGMNLQQQIGMKNLTSGIASEINKVSRCTNGL 360
           A       +G+   + +  D  + + E SG  L +             +I  VS  +  +
Sbjct: 301 AD-----FMGVE--DKSGADFCQPEPEQSGATLAE------------DKIRDVS--STYI 360

Query: 361 PPVEYEVIDVSTPSPDCRTSSHRFKRRVTSGT-SEIIDLTKSPTFIQL 386
            P + E+ID+STPSP CR+   R KRRV+S   ++ IDLT SP F+QL
Sbjct: 361 VPHDAEIIDLSTPSPSCRSVLDRKKRRVSSSIGTDFIDLTNSPNFVQL 386

[Close]
BLAST of Cla008116 vs. TrEMBL
Match: A0A067EEZ2_CITSI (Structure-specific endonuclease subunit SLX1 homolog OS=Citrus sinensis GN=CISIN_1g016815mg PE=3 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 1.0e-89
Identity = 196/383 (51.17%), Postives = 249/383 (65.01%), Query Frame = 1 

Query: 11  SKTMAVTEEEKEDDEVEDEEERG-NEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIR 70
           SKT+   +  K+D E EDEE++  ++  GFF+CYLL S CPRFKGHTYIGFTVNP+RRIR
Sbjct: 20  SKTL---DPVKDDFEEEDEEQKAKDQQKGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIR 79

Query: 71  QHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPIESLAVRSAAATFKSL 130
           QHNGEIRCGA RTK++RPWEMVLCIYGFPTNVSALQFEWAWQHP+ESLAVR AAATFKS 
Sbjct: 80  QHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSF 139

Query: 131 SGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVSPIDELPCY 190
           SGVANK+KLA+TML LP W SLNI VNYFSTKY K+++ CPSLPEHMKVQV  +DELPCY
Sbjct: 140 SGVANKIKLAFTMLNLPNWESLNIKVNYFSTKYSKHSSSCPSLPEHMKVQVRSMDELPCY 199

Query: 191 SEGDQRVLENED---DWEYNRECEEICSFRVYGTMKEVLNEVP---STDRRPHELRGCDK 250
           +E D+ +L +ED   D +YN   E        G+++E   +V    S+D         D+
Sbjct: 200 TERDESLLGDEDSLGDEDYNEASEN------SGSLEETCGDVTINFSSDYSFSIYEAADE 259

Query: 251 ELED-----NEQVPPSSCTPSYID--VGMSYDLRGCDEELEAASCDQSCILGISRTE--I 310
           +        NEQ   SSC         G+   L      + + S +++  LG  R+E   
Sbjct: 260 QCGQFKQYGNEQPRDSSCLEVNCQQPFGLLSSLETTAPIISSTSAEETNELGRQRSEQFA 319

Query: 311 TIDDGEEDQSEGSGMNLQQQIGMKNLTSGIASEINKVSRCTNGLPPVEYEVIDVSTPSPD 370
           T  + EE+         QQ    +++T  +A++  +  + + GLP V  EV+D+ TPSP+
Sbjct: 320 TAVNDEEN---------QQLAWRQSITVEVANKDQQQVQSSTGLPNV--EVVDLLTPSPN 379

Query: 371 CRTSSHRFKRRVTSGTSEIIDLT 378
           CR  S+  KRRV+     IIDLT
Sbjct: 380 CREMSYSKKRRVSGLYPVIIDLT 382

[Close]
BLAST of Cla008116 vs. TrEMBL
Match: V4T6S0_9ROSI (Structure-specific endonuclease subunit SLX1 homolog OS=Citrus clementina GN=CICLE_v10001469mg PE=3 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 1.7e-89
Identity = 194/383 (50.65%), Postives = 250/383 (65.27%), Query Frame = 1 

Query: 10  ISKTMAVTEEEKEDDEVEDEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIR 69
           ISK+  +   + + +E E+E++  ++  GFF+CYLL S CPRFKGHTYIGFTVNP+RRIR
Sbjct: 22  ISKSKTLDPVKDDFEEEEEEQKAKDQRKGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIR 81

Query: 70  QHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPIESLAVRSAAATFKSL 129
           QHNGEIRCGA RTK++RPWEMVLCIYGFPTNVSALQFEWAWQHP+ESLAVR AAATFKS 
Sbjct: 82  QHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSF 141

Query: 130 SGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVSPIDELPCY 189
           SGVANK+KLAYTML LP W SLNITVNYFSTKY K+++ CP+LPEHMKVQV  +DELPCY
Sbjct: 142 SGVANKIKLAYTMLNLPNWESLNITVNYFSTKYSKHSSSCPNLPEHMKVQVRSMDELPCY 201

Query: 190 SEGDQRVLENED---DWEYNRECEEICSFRVYGTMKEVLNEVP---------STDRRPHE 249
           +E D+R+L +ED   D EY+   E        G+++E   +V          S     +E
Sbjct: 202 TERDERLLGDEDSLGDEEYDEASEN------SGSLEETRGDVTINFSSDYSFSIYEDAYE 261

Query: 250 LRGCDKELEDNEQVPPSSCTPSYIDVGMSYDLRGCDEE---LEAASCDQSCILGISRTEI 309
             G  K+   NEQ   SSC    ++    + L    E    + + S + +  LG  R+E 
Sbjct: 262 QCGQFKQY-GNEQPRDSSCLE--VNCQEPFGLLSSLETTSVISSTSAEDTNELGRQRSEQ 321

Query: 310 TIDDGEEDQSEGSGMNLQQQIGMKNLTSGIASEINKVSRCTNGLPPVEYEVIDVSTPSPD 369
                 ++++       QQ    +++T  +A++     + + GLP V  EVID+ TPSP+
Sbjct: 322 CATAVNDEEN-------QQFAQRQSITIEVANKDQLQVQSSTGLPNV--EVIDLLTPSPN 381

Query: 370 CRTSSHRFKRRVTSGTSEIIDLT 378
           CR  S+  KRRV+S    IIDLT
Sbjct: 382 CREMSYSKKRRVSSLCPVIIDLT 386

[Close]
BLAST of Cla008116 vs. TrEMBL
Match: A0A0B2SV39_GLYSO (Structure-specific endonuclease subunit SLX1 homolog OS=Glycine soja GN=glysoja_042264 PE=3 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 1.7e-89
Identity = 188/369 (50.95%), Postives = 241/369 (65.31%), Query Frame = 1 

Query: 26  VEDEEERGNEV---NGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRT 85
           VEDEEE  NE    NGFF+CYLL S  PR+KGHTYIGFTVNP+RRIRQHNGEI CGAWRT
Sbjct: 11  VEDEEENENEDCEGNGFFACYLLTSLSPRYKGHTYIGFTVNPRRRIRQHNGEIGCGAWRT 70

Query: 86  KRKRPWEMVLCIYGFPTNVSALQFEWAWQHPIESLAVRSAAATFKSLSGVANKVKLAYTM 145
           +++RPWEMVLCIYGFPTNVSALQFEWAWQHP+ESLAVR AA  FKSLSG+ANK+KLAYTM
Sbjct: 71  RKRRPWEMVLCIYGFPTNVSALQFEWAWQHPVESLAVRKAAVEFKSLSGIANKIKLAYTM 130

Query: 146 LTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVSPIDELPCYSEGDQRVLENEDD 205
           LTLP+W S+NITVN+FSTKYMK+ AGCPSLP HMK +   +DELPCY+EG   + ENEDD
Sbjct: 131 LTLPSWQSMNITVNFFSTKYMKHCAGCPSLPAHMKTKFGSLDELPCYNEGIDGLSENEDD 190

Query: 206 WEYNRECEEICSFRVYGTMKEVLNEV--PSTDRRPHELRGCDKELEDNEQVPPSSCTPSY 265
                E E   +    G++ +V +++  P +   P+      +  E N++          
Sbjct: 191 --NIDEVEFNNNTSTSGSVPDVGDDLVTPDSPENPNHRDKISEAFEWNKESEVRQ----- 250

Query: 266 IDVGMSYDLRGCDEELEAA---SCDQSCILGISRTEITIDDGEEDQSEGSGMNLQQQIGM 325
             +G S+  +   +   +    +   S    + R +I I+D        SG +L Q    
Sbjct: 251 -PLGNSFSSQEQSQPFSSTTPLTMKSSSTTSLHRVDI-IEDDFMSVINKSGADLIQPEPE 310

Query: 326 KNLTSGIASEINKVSRCTNGLPPVEYEVIDVSTPSPDCRTSSHRFKRRVTSGT-SEIIDL 385
           ++  +  A++ + VS     + P E E+ID+STPSP CR+   R KRRV+S   ++ IDL
Sbjct: 311 QSGATSAANKNHDVSH--TFVVPNEAEIIDLSTPSPSCRSVLDRKKRRVSSSVGTDFIDL 368

[Close]
BLAST of Cla008116 vs. NCBI nr
Match: gi|659114960|ref|XP_008457313.1| (PREDICTED: uncharacterized protein LOC103497035 [Cucumis melo])

HSP 1 Score: 669.8 bits (1727), Expect = 2.7e-189
Identity = 342/403 (84.86%), Postives = 356/403 (88.34%), Query Frame = 1 

Query: 1   MGKRKEKSEISKTMA--VTEEEKEDDEVEDEEERGNEVNGFFSCYLLASACPRFKGHTYI 60
           M KRKEK EI KTMA  V +EEKEDD+  +EEERGN VNGFFSCYLLASACPRFKGHTYI
Sbjct: 1   MRKRKEKPEICKTMAAVVQDEEKEDDD--EEEERGNGVNGFFSCYLLASACPRFKGHTYI 60

Query: 61  GFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPIESLA 120
           GFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHP ESLA
Sbjct: 61  GFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLA 120

Query: 121 VRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKV 180
           VRSAAATFKSLSGVANKVKLAYTMLTLPAWC LNITVNYFSTK+MKNAAGCPSLPEHMKV
Sbjct: 121 VRSAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKV 180

Query: 181 QVSPIDELPCYSEGDQRVLENEDDWEYNRECEEICSFRVYGTMKEVLNEVP--------S 240
           QVSPIDELPCYSEGDQ VLENEDDWEY+RE EEICSF+VYG+MKEV NEVP         
Sbjct: 181 QVSPIDELPCYSEGDQGVLENEDDWEYDRESEEICSFQVYGSMKEVSNEVPQKLMDYQTG 240

Query: 241 TDRRPHE-LRGCDKELEDNEQVPPSSCTPSYIDVGMSYDLRGCDE-----ELEAASCDQS 300
           TD RP   LRGCDKELE NEQVPPSSCTPSY+DVGMSYDL  CDE     E EAASC QS
Sbjct: 241 TDGRPPPVLRGCDKELETNEQVPPSSCTPSYVDVGMSYDLCACDEGLENDEREAASCGQS 300

Query: 301 C-ILGISRTEITIDDGEEDQSEGSGMNLQQQIGMKNLTSGIASEINKVSRCTNGL-PPVE 360
           C + G SRTEI IDDGEE+Q EGSGMNLQ+Q G KNLTSGIASEI+KVSRC+NGL P VE
Sbjct: 301 CTVAGTSRTEIIIDDGEENQFEGSGMNLQEQPGRKNLTSGIASEISKVSRCSNGLVPTVE 360

Query: 361 YEVIDVSTPSPDCRTSSHRFKRRVTSGTSEIIDLTKSPTFIQL 386
           YEVIDVSTPSPDCRTSSHRFKRRVTSG SE+IDLTKSPTFIQL
Sbjct: 361 YEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL 401

[Close]
BLAST of Cla008116 vs. NCBI nr
Match: gi|449471301|ref|XP_004153269.1| (PREDICTED: structure-specific endonuclease subunit SLX1 homolog [Cucumis sativus])

HSP 1 Score: 652.9 bits (1683), Expect = 3.5e-184
Identity = 337/401 (84.04%), Postives = 349/401 (87.03%), Query Frame = 1 

Query: 1   MGKRKEKSEISKTMAVTEEEKEDDEVEDEEERGNEVNGFFSCYLLASACPRFKGHTYIGF 60
           M KRKEK EI KT   T+EEKEDDE   EEERGNEVNGFFSCYLLASACPRFKGHTYIGF
Sbjct: 1   MRKRKEKPEICKT---TDEEKEDDE---EEERGNEVNGFFSCYLLASACPRFKGHTYIGF 60

Query: 61  TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPIESLAVR 120
           TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHP ESLAVR
Sbjct: 61  TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVR 120

Query: 121 SAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQV 180
           SAAATFKSLSGVANKVKLAYTMLTLPAW  LNITVNYFSTK+MKNAAGCPSLPEHMKVQV
Sbjct: 121 SAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMKVQV 180

Query: 181 SPIDELPCYSEGDQRVLENEDDWEYNRECEEICSFRVYGTMKEVLNEVP--------STD 240
           SPI+ELPCYSEGDQ +LENE DWEYNRE EEIC FRVYG+MKEV NEVP         TD
Sbjct: 181 SPINELPCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTD 240

Query: 241 -RRPHELRGCDKELEDNEQVPPSSCTPSYIDVGMSYDLRGCDE-----ELEAASCDQSCI 300
            R PH LRGCDKELE NEQVPPSSCTPSYIDVGMSYDL  CDE     E EAASC QSCI
Sbjct: 241 GRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCI 300

Query: 301 L-GISRTEITIDDGEEDQSEGSGMNLQQQIGMKNLTSGIASEINKVSRCTNG-LPPVEYE 360
           + G SRTEI IDD EE+Q EGS MNLQ+Q G +NLTSGIASEI+KVSR  NG +P VEYE
Sbjct: 301 VAGTSRTEIVIDDEEENQLEGSSMNLQEQPGRENLTSGIASEISKVSRWNNGWVPTVEYE 360

Query: 361 VIDVSTPSPDCRTSSHRFKRRVTSGTSEIIDLTKSPTFIQL 386
           VIDVSTPSPDCRTSSHRFKRRVTSG SE+IDLTKSPTFIQL
Sbjct: 361 VIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL 395

[Close]
BLAST of Cla008116 vs. NCBI nr
Match: gi|1012364975|gb|KYP76157.1| (Structure-specific endonuclease subunit SLX1 [Cajanus cajan])

HSP 1 Score: 340.9 bits (873), Expect = 2.9e-90
Identity = 193/408 (47.30%), Postives = 255/408 (62.50%), Query Frame = 1 

Query: 1   MGKRKEKSEISKTMAVTEEEKEDDEVEDE---EERGNEVNGFFSCYLLASACPRFKGHTY 60
           M K+K  S    T+   EEE+E++   D+   ++ G+E +GF++CYLLAS  PR+KGHTY
Sbjct: 1   MRKKKVASAAHATVVKEEEEEEEEHSHDQNQNQKEGSEGDGFYACYLLASLSPRYKGHTY 60

Query: 61  IGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPIESL 120
           IGFTVNP+RRIRQHNGEI CGAWRTK++RPWEMVLCIYGFPTNVSALQFEWAWQHP+ESL
Sbjct: 61  IGFTVNPRRRIRQHNGEIGCGAWRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPVESL 120

Query: 121 AVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMK 180
           AVR AA  FKSLSG+ANK+KLAYTML LP+W S+NITVN+FSTKYMK+ AGCPSLP HMK
Sbjct: 121 AVRKAAVGFKSLSGIANKIKLAYTMLNLPSWQSMNITVNFFSTKYMKHCAGCPSLPVHMK 180

Query: 181 VQVSPIDELPCYSEGDQRVLENEDD----WEYNRECEEICSFRVYGTMKEVLNE--VPST 240
           +++  +DELPCYSE +  + ENEDD     E++       + R   ++ +V ++  +P +
Sbjct: 181 IKIGSLDELPCYSENNDSLSENEDDNIDEVEFDNN-NNNNNTRTSDSVPDVSDDFVIPDS 240

Query: 241 DRRPHELRGCDKELEDN-------------EQVPPSSCTPSYIDVGMSYDLRGCDEELEA 300
            +  +      +  E N             EQ+ P S T        S  L    E +E 
Sbjct: 241 PKNSNHRDNISETFEQNKESEARKQIFASQEQLQPFSSTTPMTMKSSSATLLPRIETIEE 300

Query: 301 ASCDQSCILGISRTEITIDDGEEDQSEGSGMNLQQQIGMKNLTSGIASEINKVSRCTNGL 360
           A       +G+   + +  D  + + E SG  L +             +I  VS  +  +
Sbjct: 301 AD-----FMGVE--DKSGADFCQPEPEQSGATLAE------------DKIRDVS--STYI 360

Query: 361 PPVEYEVIDVSTPSPDCRTSSHRFKRRVTSGT-SEIIDLTKSPTFIQL 386
            P + E+ID+STPSP CR+   R KRRV+S   ++ IDLT SP F+QL
Sbjct: 361 VPHDAEIIDLSTPSPSCRSVLDRKKRRVSSSIGTDFIDLTNSPNFVQL 386

[Close]
BLAST of Cla008116 vs. NCBI nr
Match: gi|641830686|gb|KDO49767.1| (hypothetical protein CISIN_1g016815mg [Citrus sinensis])

HSP 1 Score: 338.6 bits (867), Expect = 1.5e-89
Identity = 196/383 (51.17%), Postives = 249/383 (65.01%), Query Frame = 1 

Query: 11  SKTMAVTEEEKEDDEVEDEEERG-NEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIR 70
           SKT+   +  K+D E EDEE++  ++  GFF+CYLL S CPRFKGHTYIGFTVNP+RRIR
Sbjct: 20  SKTL---DPVKDDFEEEDEEQKAKDQQKGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIR 79

Query: 71  QHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPIESLAVRSAAATFKSL 130
           QHNGEIRCGA RTK++RPWEMVLCIYGFPTNVSALQFEWAWQHP+ESLAVR AAATFKS 
Sbjct: 80  QHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSF 139

Query: 131 SGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVSPIDELPCY 190
           SGVANK+KLA+TML LP W SLNI VNYFSTKY K+++ CPSLPEHMKVQV  +DELPCY
Sbjct: 140 SGVANKIKLAFTMLNLPNWESLNIKVNYFSTKYSKHSSSCPSLPEHMKVQVRSMDELPCY 199

Query: 191 SEGDQRVLENED---DWEYNRECEEICSFRVYGTMKEVLNEVP---STDRRPHELRGCDK 250
           +E D+ +L +ED   D +YN   E        G+++E   +V    S+D         D+
Sbjct: 200 TERDESLLGDEDSLGDEDYNEASEN------SGSLEETCGDVTINFSSDYSFSIYEAADE 259

Query: 251 ELED-----NEQVPPSSCTPSYID--VGMSYDLRGCDEELEAASCDQSCILGISRTE--I 310
           +        NEQ   SSC         G+   L      + + S +++  LG  R+E   
Sbjct: 260 QCGQFKQYGNEQPRDSSCLEVNCQQPFGLLSSLETTAPIISSTSAEETNELGRQRSEQFA 319

Query: 311 TIDDGEEDQSEGSGMNLQQQIGMKNLTSGIASEINKVSRCTNGLPPVEYEVIDVSTPSPD 370
           T  + EE+         QQ    +++T  +A++  +  + + GLP V  EV+D+ TPSP+
Sbjct: 320 TAVNDEEN---------QQLAWRQSITVEVANKDQQQVQSSTGLPNV--EVVDLLTPSPN 379

Query: 371 CRTSSHRFKRRVTSGTSEIIDLT 378
           CR  S+  KRRV+     IIDLT
Sbjct: 380 CREMSYSKKRRVSGLYPVIIDLT 382

[Close]
BLAST of Cla008116 vs. NCBI nr
Match: gi|985433421|ref|XP_015382462.1| (PREDICTED: uncharacterized protein LOC102631105 isoform X2 [Citrus sinensis])

HSP 1 Score: 337.8 bits (865), Expect = 2.5e-89
Identity = 194/383 (50.65%), Postives = 250/383 (65.27%), Query Frame = 1 

Query: 10  ISKTMAVTEEEKEDDEVEDEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIR 69
           ISK+  +   + + +E E+E++  ++  GFF+CYLL S CPRFKGHTYIGFTVNP+RRIR
Sbjct: 17  ISKSKTLDPVKDDFEEEEEEQKAKDQRKGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIR 76

Query: 70  QHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPIESLAVRSAAATFKSL 129
           QHNGEIRCGA RTK++RPWEMVLCIYGFPTNVSALQFEWAWQHP+ESLAVR AAATFKS 
Sbjct: 77  QHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSF 136

Query: 130 SGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVSPIDELPCY 189
           SGVANK+KLAYTML LP W SLNITVNYFSTKY K+++ CP+LPEHMKVQV  +DELPCY
Sbjct: 137 SGVANKIKLAYTMLNLPNWESLNITVNYFSTKYSKHSSSCPNLPEHMKVQVRSMDELPCY 196

Query: 190 SEGDQRVLENED---DWEYNRECEEICSFRVYGTMKEVLNEVP---------STDRRPHE 249
           +E D+R+L +ED   D EY+   E        G+++E   +V          S     +E
Sbjct: 197 TERDERLLGDEDSLGDEEYDEASEN------SGSLEETRGDVTINFSSDYSFSIYEDAYE 256

Query: 250 LRGCDKELEDNEQVPPSSCTPSYIDVGMSYDLRGCDEE---LEAASCDQSCILGISRTEI 309
             G  K+   NEQ   SSC    ++    + L    E    + + S + +  LG  R+E 
Sbjct: 257 QCGQFKQY-GNEQPRDSSCLE--VNCQEPFGLLSSLETTSVISSTSAEDTNELGRQRSEQ 316

Query: 310 TIDDGEEDQSEGSGMNLQQQIGMKNLTSGIASEINKVSRCTNGLPPVEYEVIDVSTPSPD 369
                 ++++       QQ    +++T  +A++     + + GLP V  EVID+ TPSP+
Sbjct: 317 CATAVNDEEN-------QQFAQRQSITIEVANKDQLQVQSSTGLPNV--EVIDLLTPSPN 376

Query: 370 CRTSSHRFKRRVTSGTSEIIDLT 378
           CR  S+  KRRV+S    IIDLT
Sbjct: 377 CREMSYSKKRRVSSLCPVIIDLT 381

The following BLAST results are available for this feature:
BLAST of Cla008116 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SLX1_MOUSE6.4e-2940.74Structure-specific endonuclease subunit SLX1 OS=Mus musculus GN=Slx1b PE=2 SV=1[more]
SLX1_RAT1.9e-2840.12Structure-specific endonuclease subunit SLX1 OS=Rattus norvegicus GN=Slx1b PE=2 ... [more]
SLX1_BOVIN3.5e-2741.38Structure-specific endonuclease subunit SLX1 OS=Bos taurus GN=SLX1A PE=2 SV=1[more]
SLX1_NEMVE3.0e-2637.93Structure-specific endonuclease subunit SLX1 homolog OS=Nematostella vectensis G... [more]
SLX1_XENLA3.0e-2638.96Structure-specific endonuclease subunit slx1 OS=Xenopus laevis GN=slx1a PE=2 SV=... [more]
BLAST of Cla008116 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M0Y6_CUCSA2.4e-18484.04Structure-specific endonuclease subunit SLX1 homolog OS=Cucumis sativus GN=Csa_1... [more]
A0A151UA25_CAJCA2.0e-9047.30Structure-specific endonuclease subunit SLX1 OS=Cajanus cajan GN=KK1_020383 PE=3... [more]
A0A067EEZ2_CITSI1.0e-8951.17Structure-specific endonuclease subunit SLX1 homolog OS=Citrus sinensis GN=CISIN... [more]
V4T6S0_9ROSI1.7e-8950.65Structure-specific endonuclease subunit SLX1 homolog OS=Citrus clementina GN=CIC... [more]
A0A0B2SV39_GLYSO1.7e-8950.95Structure-specific endonuclease subunit SLX1 homolog OS=Glycine soja GN=glysoja_... [more]
BLAST of Cla008116 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659114960|ref|XP_008457313.1|2.7e-18984.86PREDICTED: uncharacterized protein LOC103497035 [Cucumis melo][more]
gi|449471301|ref|XP_004153269.1|3.5e-18484.04PREDICTED: structure-specific endonuclease subunit SLX1 homolog [Cucumis sativus... [more]
gi|1012364975|gb|KYP76157.1|2.9e-9047.30Structure-specific endonuclease subunit SLX1 [Cajanus cajan][more]
gi|641830686|gb|KDO49767.1|1.5e-8951.17hypothetical protein CISIN_1g016815mg [Citrus sinensis][more]
gi|985433421|ref|XP_015382462.1|2.5e-8950.65PREDICTED: uncharacterized protein LOC102631105 isoform X2 [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000305GIY-YIG_endonuc
IPR027520Slx1
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:00171085'-flap endonuclease activity
Vocabulary: Cellular Component
TermDefinition
GO:0033557Slx1-Slx4 complex
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006308 DNA catabolic process
biological_process GO:0008150 biological_process
biological_process GO:0006281 DNA repair
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0000724 double-strand break repair via homologous recombination
biological_process GO:0006974 cellular response to DNA damage stimulus
biological_process GO:0006310 DNA recombination
cellular_component GO:0033557 Slx1-Slx4 complex
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0004520 endodeoxyribonuclease activity
molecular_function GO:0004518 nuclease activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0017108 5'-flap endonuclease activity
molecular_function GO:0008821 crossover junction endodeoxyribonuclease activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla008116Cla008116.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000305GIY-YIG nuclease superfamilyPFAMPF01541GIY-YIGcoord: 43..112
score: 4.1
IPR000305GIY-YIG nuclease superfamilyPROFILEPS50164GIY_YIGcoord: 38..120
score: 17
IPR027520Structure-specific endonuclease subunit Slx1HAMAPMF_03100Endonuc_su_Slx1coord: 35..372
score: 2
NoneNo IPR availablePANTHERPTHR20208FAMILY NOT NAMEDcoord: 4..202
score: 1.3
NoneNo IPR availablePANTHERPTHR20208:SF10STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1coord: 4..202
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla008116Cla97C03G051050Watermelon (97103) v2wmwmbB124
Cla008116Csa1G533630Cucumber (Chinese Long) v2cuwmB021
Cla008116MELO3C020503Melon (DHL92) v3.5.1mewmB146
Cla008116ClCG03G000240Watermelon (Charleston Gray)wcgwmB223
Cla008116CSPI01G24370Wild cucumber (PI 183967)cpiwmB023
Cla008116Cucsa.151960Cucumber (Gy14) v1cgywmB270
Cla008116CmoCh01G007520Cucurbita moschata (Rifu)cmowmB419
Cla008116CmoCh13G000090Cucurbita moschata (Rifu)cmowmB179
Cla008116MELO3C020503.2Melon (DHL92) v3.6.1medwmB143
Cla008116Carg07021Silver-seed gourdcarwmB0517
Cla008116Carg26961Silver-seed gourdcarwmB0319
Cla008116CsaV3_1G036670Cucumber (Chinese Long) v3cucwmB026
Cla008116Bhi08G000365Wax gourdwgowmB471
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla008116Cucumber (Gy14) v1cgywmB158
Cla008116Cucurbita maxima (Rimu)cmawmB185
Cla008116Cucurbita maxima (Rimu)cmawmB191
Cla008116Cucurbita maxima (Rimu)cmawmB426
Cla008116Cucurbita maxima (Rimu)cmawmB429
Cla008116Cucurbita moschata (Rifu)cmowmB173
Cla008116Cucurbita moschata (Rifu)cmowmB422
Cla008116Cucurbita moschata (Rifu)cmowmB548
Cla008116Cucurbita pepo (Zucchini)cpewmB506
Cla008116Cucurbita pepo (Zucchini)cpewmB507
Cla008116Cucurbita pepo (Zucchini)cpewmB550
Cla008116Cucurbita pepo (Zucchini)cpewmB552
Cla008116Bottle gourd (USVL1VR-Ls)lsiwmB056
Cla008116Bottle gourd (USVL1VR-Ls)lsiwmB185
Cla008116Cucumber (Gy14) v2cgybwmB023
Cla008116Cucumber (Gy14) v2cgybwmB029
Cla008116Cucumber (Gy14) v2cgybwmB452
Cla008116Silver-seed gourdcarwmB0515
Cla008116Cucumber (Chinese Long) v3cucwmB508
Cla008116Wax gourdwgowmB325
Cla008116Wax gourdwgowmB369
Cla008116Watermelon (97103) v1wmwmB089
Cla008116Watermelon (97103) v1wmwmB096