Cucsa.146580 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.146580
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionTranscription elongation factor B polypeptide 1
Locationscaffold01100 : 31268 .. 33306 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAAAACAAGAATCGAAAGCTTTCTCTTCAAAGGGAGAGGGAACAAGCATCTCTCTCAACTACGACCGAAATGAAGAAGGAAGACACTGTAAAATTGATCAGCGCTGAAGGTTTCGAGTTCGTGATTCACAAGGATGCTGCCATGGTTTCTCAAACGATTCGAAACATGCTTACTTCCCCAGGTTTCCCTTTCTCATTCTCACTTTCTGTACATCAATCCATTTTTTtGAGGCATACGATCTTATTTTTTtCAATCCTTGTTTATGTACGATGAATTTGGTGAAAATTTGGTATAATGGGTGTTTTATTTTGGATTTTCCCCCCATGTTTAGGGCTTTGTTTTACTGTTTTCGTTTTCATGGATAGGAAATTTTGCTGAATCGCAGCATAGAGAAGTGACTTTTCCTGAGATTAGTACCACCATTCTCGAGAAGATTTGCCAATATTTTCACTGGAATCTTCAATTCGCGAGGTTTTCATTTCTTCTTTATTATGTCAATTTTTCTCTGTTTCTGATTAATCTGTGGAATTGCCTTACTTTCTGGTTATTTTGCTTAAACTGGCCATATTCTGATGGTTACTATTTGAAAATGTATATTGTTTATTGAAAGTTTTGATGCTTGAATAGACTTTCTAAGTGCTTAAAAAAGTGCTTTTAGGTGCAAAGAAAATAATCCTTTCAAGCAACAAACAGTCCTTAGTTTCTCAACCTACCTCACAAATTAGTTCTGAAAAAGATGAGTTATGGATGTTATTGCACTTGTTGCCACCATTCTTGTCCATCATCTCGAAGGGTTATTAGAGGGTAATCGACTTTTAGTTTGTTACTTTTGGAATTTAGTAAATGTAGTGACATGGGTCCTATTATCATAATTTATTTTGCTATTTTTGCAAGCATCCCTTTTTTAAAATAGAAAACTGGTGTGCAGGACATCTAATTCTGCCATTTGACCTGTGCAGATTGATCTTGTTAGTCTGAAATCTTAGATTTGTATAGGAAAAGAAAATAGAAATTTTCTGGGAAACTAGATAGAATGAATAGAAAACTGCAGTGCTGTTTAATCCAGATTAATTTGGCCCGTCACCATCCATGTTTCTATAGTTACGTACTTTCTGTAGTTTCTTCTATAAGAGAGGTCTTGTAGGCATGGTGATAAGGACATGCCTCCTAGATTATAATTTACCTCTCACACCTATTTGAAGAATTATTCATAAATGCGTAAACAGAATTGAGACGGAGTAACCTCTTCTCACTATTTTGCAACTTGTAACTTCCCAAAGTGTTTTTGTGGCATGTGGGAGAGCGACAAATTTTGTAGAAAGTTTTGATTGACAAGCCTCCTAGACTGTCTCACGCCCATTTAGATCATTATTCATCCATATGTAAACAGAATTAGGCTAGAGTAAGCTCTTCTCATTATTGCAACTCGCCAGTGTTTCTATGGCAAGTGGGGGGgAGCATACTTATGGATTTAGATAAATATTGTACAAAGGTTTGGATGGACGAGTGTGTAAATGTTTTGGTCGTTTGCTCATTGTTGGACAACAGATGAAATTAAACTTTTCATATAAACTTATGTACTTCTCATTTTCTGGCAATCTTATGTGGAATTAACTGATTAAAGATTATGTTGTCAATATTTACGTGTCCTCTTTATCTAGTTCGTTCTTGTTTCATTCTTTAACTCCATTGTCACTGATTGATTTCTtCCTTTTGTCAGTGGGAAAGAGACCGAGTTCCCTATTGAACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGAAATATGTAACCTCTATGCACTCTTCCACCCATTTGACATTGTAAGCAGATGGCAATTTTATGTGATAGATATAGATTTCCTTGACTAATAGATTGTCAGTGAAGTTCATTACAATACTACTTTtGTCTTTTTTTTtttggTTttGGGGGgttGGGGGGggTCAGGAATTCATACTTGTGGATGACATTGTTGTTTCATTTCACTCATTGGAACTCCGTGTCAACTATTGAGCTCTGGGA

mRNA sequence

CCAAAACAAGAATCGAAAGCTTTCTCTTCAAAGGGAGAGGGAACAAGCATCTCTCTCAACTACGACCGAAATGAAGAAGGAAGACACTGTAAAATTGATCAGCGCTGAAGGTTTCGAGTTCGTGATTCACAAGGATGCTGCCATGGTTTCTCAAACGATTCGAAACATGCTTACTTCCCCAGGAAATTTTGCTGAATCGCAGCATAGAGAAGTGACTTTTCCTGAGATTAGTACCACCATTCTCGAGAAGATTTGCCAATATTTTCACTGGAATCTTCAATTCGCGAGTGGGAAAGAGACCGAGTTCCCTATTGAACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGAAATATGTAACCTCTATGCACTCTTCCACCCATTTGACATTGTAAGCAGATGGCAATTTTATGTGATAGATATAGATTTCCTTGACTAATAGATTGTCAGTGAAGTTCATTACAATACTACTTTTGTCTTTTTTTTTTTGGTTTTGGGGGGTTGGGGGGGGTCAGGAATTCATACTTGTGGATGACATTGTTGTTTCATTTCACTCATTGGAACTCCGTGTCAACTATTGAGCTCTGGGA

Coding sequence (CDS)

CAAAACAAGAATCGAAAGCTTTCTCTTCAAAGGGAGAGGGAACAAGCATCTCTCTCAACTACGACCGAAATGAAGAAGGAAGACACTGTAAAATTGATCAGCGCTGAAGGTTTCGAGTTCGTGATTCACAAGGATGCTGCCATGGTTTCTCAAACGATTCGAAACATGCTTACTTCCCCAGGAAATTTTGCTGAATCGCAGCATAGAGAAGTGACTTTTCCTGAGATTAGTACCACCATTCTCGAGAAGATTTGCCAATATTTTCACTGGAATCTTCAATTCGCGAGTGGGAAAGAGACCGAGTTCCCTATTGAACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGA

Protein sequence

QNKNRKLSLQREREQASLSTTTEMKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT*
Homology
[Close]
BLAST of Cucsa.146580 vs. Swiss-Prot
Match: ELOC_HUMAN (Transcription elongation factor B polypeptide 1 OS=Homo sapiens GN=TCEB1 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.6e-18
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 1 

Query: 30  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFH 89
           VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF 
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 90  WNLQF--ASGKETEFPIEPELTLELMMAANYL 120
           + +++  +S +  EFPI PE+ LEL+MAAN+L
Sbjct: 79  YKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110

[Close]
BLAST of Cucsa.146580 vs. Swiss-Prot
Match: ELOC_MOUSE (Transcription elongation factor B polypeptide 1 OS=Mus musculus GN=Tceb1 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.6e-18
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 1 

Query: 30  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFH 89
           VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF 
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 90  WNLQF--ASGKETEFPIEPELTLELMMAANYL 120
           + +++  +S +  EFPI PE+ LEL+MAAN+L
Sbjct: 79  YKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110

[Close]
BLAST of Cucsa.146580 vs. Swiss-Prot
Match: ELOC_RAT (Transcription elongation factor B polypeptide 1 OS=Rattus norvegicus GN=Tceb1 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.6e-18
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 1 

Query: 30  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFH 89
           VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF 
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 90  WNLQF--ASGKETEFPIEPELTLELMMAANYL 120
           + +++  +S +  EFPI PE+ LEL+MAAN+L
Sbjct: 79  YKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110

[Close]
BLAST of Cucsa.146580 vs. Swiss-Prot
Match: ELOC_BOVIN (Transcription elongation factor B polypeptide 1 OS=Bos taurus GN=TCEB1 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.6e-18
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 1 

Query: 30  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFH 89
           VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF 
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 90  WNLQF--ASGKETEFPIEPELTLELMMAANYL 120
           + +++  +S +  EFPI PE+ LEL+MAAN+L
Sbjct: 79  YKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110

[Close]
BLAST of Cucsa.146580 vs. Swiss-Prot
Match: ELOC_SCHPO (Elongin-C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=elc1 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 9.8e-16
Identity = 41/95 (43.16%), Postives = 66/95 (69.47%), Query Frame = 1 

Query: 26  KEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKIC 85
           +++ V+LIS +GF F++ K+ A +S TIR +L   G F+E+Q  E TFP+I  T+LEK+C
Sbjct: 2   EKEYVRLISGDGFVFILEKEIACLSGTIRAILNE-GIFSEAQKNECTFPDIRATLLEKVC 61

Query: 86  QYFHWNLQFASGKE-TEFPIEPELTLELMMAANYL 120
           +Y H+N ++ +  +  +F I PE+ LEL++ A YL
Sbjct: 62  EYLHYNYRYKNQLDIPKFDIPPEMVLELLVTAEYL 95

[Close]
BLAST of Cucsa.146580 vs. TrEMBL
Match: A0A0A0LY44_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G525280 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.4e-48
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 24  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 83
           MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1   MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 84  ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 122
           ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61  ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]
BLAST of Cucsa.146580 vs. TrEMBL
Match: K7M3G3_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.2e-44
Identity = 95/114 (83.33%), Postives = 102/114 (89.47%), Query Frame = 1 

Query: 10  QREREQA--SLSTTTEMKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQ 69
           QRERE+     S   +MKKEDTVKLISAEGFEFV+ K+AAMVSQTI NMLTSPG+FAE Q
Sbjct: 49  QREREEGFGCESENQKMKKEDTVKLISAEGFEFVVDKEAAMVSQTIHNMLTSPGSFAERQ 108

Query: 70  HREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 122
           H EVTFPEISTTILEKICQYF+W+LQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 109 HGEVTFPEISTTILEKICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT 162

[Close]
BLAST of Cucsa.146580 vs. TrEMBL
Match: W9S530_9ROSA (Transcription elongation factor B polypeptide 1 OS=Morus notabilis GN=L484_025322 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 7.7e-44
Identity = 89/98 (90.82%), Postives = 96/98 (97.96%), Query Frame = 1 

Query: 24  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 83
           M+KEDTVKLISAEGFEFV+HKDAAMVSQTIRNMLTSPG+FAE+QH EVTFPEISTTILEK
Sbjct: 1   MRKEDTVKLISAEGFEFVVHKDAAMVSQTIRNMLTSPGSFAETQHGEVTFPEISTTILEK 60

Query: 84  ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 122
           IC+YF+WNL+FASGKETEF IEPELTLELMMAANYLHT
Sbjct: 61  ICKYFYWNLEFASGKETEFHIEPELTLELMMAANYLHT 98

[Close]
BLAST of Cucsa.146580 vs. TrEMBL
Match: B9HPC0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s04270g PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.0e-43
Identity = 88/98 (89.80%), Postives = 97/98 (98.98%), Query Frame = 1 

Query: 24  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 83
           M+KEDTVKLISAEGFEFVIHK+AAMVSQTIRNMLTSPG+FAE++H EVTFPEISTTILEK
Sbjct: 1   MRKEDTVKLISAEGFEFVIHKEAAMVSQTIRNMLTSPGSFAETEHGEVTFPEISTTILEK 60

Query: 84  ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 122
           ICQYF+W+LQ+A+GKETEFPIEPELTLELMMAANYLHT
Sbjct: 61  ICQYFYWSLQYANGKETEFPIEPELTLELMMAANYLHT 98

[Close]
BLAST of Cucsa.146580 vs. TrEMBL
Match: V7BWG8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G146900g PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.9e-43
Identity = 89/99 (89.90%), Postives = 95/99 (95.96%), Query Frame = 1 

Query: 23  EMKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILE 82
           +MKKEDTVKLISAEGFEFV+ K+AAMVSQTI NMLTSPG+FAE QH EVTFPEISTTILE
Sbjct: 47  KMKKEDTVKLISAEGFEFVVDKEAAMVSQTIHNMLTSPGSFAERQHGEVTFPEISTTILE 106

Query: 83  KICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 122
           KICQYF+W+LQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 107 KICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT 145

[Close]
BLAST of Cucsa.146580 vs. TAIR10
Match: AT5G59140.1 (AT5G59140.1 BTB/POZ domain-containing protein)

HSP 1 Score: 154.1 bits (388), Expect = 5.7e-38
Identity = 75/94 (79.79%), Postives = 86/94 (91.49%), Query Frame = 1 

Query: 28  DTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQY 87
           +TVKLIS EGFEFVI ++AAMVSQTIR+MLTSPG F+ES+   VTFP+ISTTILEKICQY
Sbjct: 3   ETVKLISMEGFEFVIDREAAMVSQTIRSMLTSPGGFSESKDGVVTFPDISTTILEKICQY 62

Query: 88  FHWNLQFASGKETEFPIEPELTLELMMAANYLHT 122
           F+W+LQ++ GKETEF IEPELTLELMMAANYLHT
Sbjct: 63  FYWSLQYSRGKETEFHIEPELTLELMMAANYLHT 96

[Close]
BLAST of Cucsa.146580 vs. NCBI nr
Match: gi|449455078|ref|XP_004145280.1| (PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 2.0e-48
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 24  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 83
           MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1   MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 84  ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 122
           ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61  ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]
BLAST of Cucsa.146580 vs. NCBI nr
Match: gi|1009114731|ref|XP_015873844.1| (PREDICTED: transcription elongation factor B polypeptide 1 [Ziziphus jujuba])

HSP 1 Score: 184.9 bits (468), Expect = 8.5e-44
Identity = 90/98 (91.84%), Postives = 96/98 (97.96%), Query Frame = 1 

Query: 24  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 83
           M+KEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPG+FAE++H EVTFPEISTTILEK
Sbjct: 1   MRKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGSFAETEHGEVTFPEISTTILEK 60

Query: 84  ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 122
           IC+YF+WNLQFASGKETEF IEPELTLELMMAANYLHT
Sbjct: 61  ICKYFYWNLQFASGKETEFHIEPELTLELMMAANYLHT 98

[Close]
BLAST of Cucsa.146580 vs. NCBI nr
Match: gi|703137802|ref|XP_010106562.1| (Transcription elongation factor B polypeptide 1 [Morus notabilis])

HSP 1 Score: 184.5 bits (467), Expect = 1.1e-43
Identity = 89/98 (90.82%), Postives = 96/98 (97.96%), Query Frame = 1 

Query: 24  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 83
           M+KEDTVKLISAEGFEFV+HKDAAMVSQTIRNMLTSPG+FAE+QH EVTFPEISTTILEK
Sbjct: 1   MRKEDTVKLISAEGFEFVVHKDAAMVSQTIRNMLTSPGSFAETQHGEVTFPEISTTILEK 60

Query: 84  ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 122
           IC+YF+WNL+FASGKETEF IEPELTLELMMAANYLHT
Sbjct: 61  ICKYFYWNLEFASGKETEFHIEPELTLELMMAANYLHT 98

[Close]
BLAST of Cucsa.146580 vs. NCBI nr
Match: gi|224106387|ref|XP_002314149.1| (hypothetical protein POPTR_0009s04270g [Populus trichocarpa])

HSP 1 Score: 184.1 bits (466), Expect = 1.5e-43
Identity = 88/98 (89.80%), Postives = 97/98 (98.98%), Query Frame = 1 

Query: 24  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 83
           M+KEDTVKLISAEGFEFVIHK+AAMVSQTIRNMLTSPG+FAE++H EVTFPEISTTILEK
Sbjct: 1   MRKEDTVKLISAEGFEFVIHKEAAMVSQTIRNMLTSPGSFAETEHGEVTFPEISTTILEK 60

Query: 84  ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 122
           ICQYF+W+LQ+A+GKETEFPIEPELTLELMMAANYLHT
Sbjct: 61  ICQYFYWSLQYANGKETEFPIEPELTLELMMAANYLHT 98

[Close]
BLAST of Cucsa.146580 vs. NCBI nr
Match: gi|657987710|ref|XP_008386018.1| (PREDICTED: transcription elongation factor B polypeptide 1 [Malus domestica])

HSP 1 Score: 184.1 bits (466), Expect = 1.5e-43
Identity = 88/98 (89.80%), Postives = 96/98 (97.96%), Query Frame = 1 

Query: 24  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 83
           MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPG+F+E++H EVTFPEISTTILEK
Sbjct: 1   MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGSFSETEHGEVTFPEISTTILEK 60

Query: 84  ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 122
           IC+YF+WNLQ+ASGK+TEFPIEPEL LELMMAANYLHT
Sbjct: 61  ICKYFYWNLQYASGKQTEFPIEPELVLELMMAANYLHT 98

The following BLAST results are available for this feature:
BLAST of Cucsa.146580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ELOC_HUMAN3.6e-1847.83Transcription elongation factor B polypeptide 1 OS=Homo sapiens GN=TCEB1 PE=1 SV... [more]
ELOC_MOUSE3.6e-1847.83Transcription elongation factor B polypeptide 1 OS=Mus musculus GN=Tceb1 PE=1 SV... [more]
ELOC_RAT3.6e-1847.83Transcription elongation factor B polypeptide 1 OS=Rattus norvegicus GN=Tceb1 PE... [more]
ELOC_BOVIN3.6e-1847.83Transcription elongation factor B polypeptide 1 OS=Bos taurus GN=TCEB1 PE=3 SV=1[more]
ELOC_SCHPO9.8e-1643.16Elongin-C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=elc1 PE=3 SV... [more]
BLAST of Cucsa.146580 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LY44_CUCSA1.4e-48100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G525280 PE=3 SV=1[more]
K7M3G3_SOYBN1.2e-4483.33Uncharacterized protein OS=Glycine max PE=3 SV=1[more]
W9S530_9ROSA7.7e-4490.82Transcription elongation factor B polypeptide 1 OS=Morus notabilis GN=L484_02532... [more]
B9HPC0_POPTR1.0e-4389.80Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s04270g PE=3 SV=1[more]
V7BWG8_PHAVU2.9e-4389.90Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G146900g PE=3 SV=1[more]
BLAST of Cucsa.146580 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G59140.15.7e-3879.79 BTB/POZ domain-containing protein[more]
BLAST of Cucsa.146580 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449455078|ref|XP_004145280.1|2.0e-48100.00PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis sativus][more]
gi|1009114731|ref|XP_015873844.1|8.5e-4491.84PREDICTED: transcription elongation factor B polypeptide 1 [Ziziphus jujuba][more]
gi|703137802|ref|XP_010106562.1|1.1e-4390.82Transcription elongation factor B polypeptide 1 [Morus notabilis][more]
gi|224106387|ref|XP_002314149.1|1.5e-4389.80hypothetical protein POPTR_0009s04270g [Populus trichocarpa][more]
gi|657987710|ref|XP_008386018.1|1.5e-4389.80PREDICTED: transcription elongation factor B polypeptide 1 [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001232SKP1-like
IPR011333SKP1/BTB/POZ_sf
IPR016073Skp1_comp_POZ
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009062 fatty acid catabolic process
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0006366 transcription from RNA polymerase II promoter
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
cellular_component GO:0005829 cytosol
cellular_component GO:0005840 ribosome
cellular_component GO:0005575 cellular_component
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.146580.1Cucsa.146580.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001232S-phase kinase-associated protein 1-likeSMARTSM00512skp1_3coord: 27..121
score: 2.
IPR011333SKP1/BTB/POZ domainunknownSSF54695POZ domaincoord: 27..120
score: 2.07
IPR016073SKP1 component, POZ domainPFAMPF03931Skp1_POZcoord: 29..90
score: 1.
NoneNo IPR availableGENE3DG3DSA:3.30.710.10coord: 29..120
score: 1.2
NoneNo IPR availablePANTHERPTHR20648FAMILY NOT NAMEDcoord: 21..121
score: 3.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.146580Cla008209Watermelon (97103) v1cgywmB255
Cucsa.146580Csa1G525280Cucumber (Chinese Long) v2cgycuB210
Cucsa.146580MELO3C020599Melon (DHL92) v3.5.1cgymeB243
Cucsa.146580ClCG03G001200Watermelon (Charleston Gray)cgywcgB246
Cucsa.146580CSPI01G23410Wild cucumber (PI 183967)cgycpiB214
Cucsa.146580CmaCh13G001030Cucurbita maxima (Rimu)cgycmaB0402
Cucsa.146580CmaCh01G006280Cucurbita maxima (Rimu)cgycmaB0403
Cucsa.146580CmoCh01G006580Cucurbita moschata (Rifu)cgycmoB0403
Cucsa.146580CmoCh13G001020Cucurbita moschata (Rifu)cgycmoB0402
Cucsa.146580Lsi02G013290Bottle gourd (USVL1VR-Ls)cgylsiB233
Cucsa.146580Cp4.1LG20g08320Cucurbita pepo (Zucchini)cgycpeB0389
Cucsa.146580Cp4.1LG02g11630Cucurbita pepo (Zucchini)cgycpeB0391
Cucsa.146580MELO3C020599.2Melon (DHL92) v3.6.1cgymedB240
Cucsa.146580CsaV3_1G035700Cucumber (Chinese Long) v3cgycucB219
Cucsa.146580Cla97C03G052050Watermelon (97103) v2cgywmbB246
Cucsa.146580Bhi08G000478Wax gourdcgywgoB286
Cucsa.146580Carg20635Silver-seed gourdcarcgyB0445
Cucsa.146580Carg12395Silver-seed gourdcarcgyB0509
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.146580Wax gourdcgywgoB284
Cucsa.146580Cucumber (Gy14) v1cgycgyB083
Cucsa.146580Wild cucumber (PI 183967)cgycpiB216
Cucsa.146580Cucumber (Chinese Long) v2cgycuB212
Cucsa.146580Melon (DHL92) v3.5.1cgymeB244
Cucsa.146580Watermelon (97103) v1cgywmB256
Cucsa.146580Bottle gourd (USVL1VR-Ls)cgylsiB234
Cucsa.146580Melon (DHL92) v3.6.1cgymedB241
Cucsa.146580Cucumber (Chinese Long) v3cgycucB220
Cucsa.146580Cucumber (Chinese Long) v3cgycucB221