CmoCh13G001020 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh13G001020
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTranscription elongation factor B polypeptide 1
LocationCmo_Chr13 : 571139 .. 573546 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTAACGAAAATTTGGTTGCAACGTGAAGAAAGCGAGGGGAAGAGGAATATCTCTCATTTCTGCAAAATAGTTCAGAGCCAAATGAAGAAGGAAGAGACTGTGAAATTGATCAGCGCTGAGGGTTTCGAGTTCTTGATCCACAAGGATGCTGCCATGGTTTCTCAGACCATTCGAAACATGCTTACTTCCCCAGGTCTCCCTCTCTCTGTTGATCAATCCACTTTTTGAGGCTTACGATCTAGTTTTTTATTTCTTGCTCATGTATGGAGAAGAATGGATTAGGTGAAATCTAGGAATTGTTGTTTTGTTTTGAAATTTTCATGTTTAGGGCTTTGTTTTACTATTTTAGTTTTTATGGATAGGTAATTTTGCTGAATCGCAACACAGAGAAGTGACTTTTCCTGAGATTAGTACCACCATTCTCGAGAAGATTTGCCAATATTTTTACTGGAATCTTCAATTCGCCAGGTTTTTGTTTCTTTTTTTATGTCGACTTCTCTCTAATTATGATTAGTCTGAGATGAATTGCCTGAATTTCTAGCAAAGTAAGATGCTGATGTTACCTTTTGCTTTATTTCGGATTTCAGGTTCGGTTAGTTTTTCTTAAACTGGTCCTGTTCCAATGATTACTAATTGGAAGTGTAAATCGTTTACACTGAATCACGTGGGAATGAAACTTTTGATGCTTATTGTCTGATAAAGATATTAGTTATGGATGTTATTGTAGTTCTTGTTACTATTCTGGTCCATGATCTTGGTCTCTTTACATTTTTTTCGTTTTTTTTTTTTTTTTTTCTGGAATTGTTTGTTAACGTAGGGCTGCATCCTCTCCAATTAATTGATAATAGAAACGAAGCGTAGGGCGTCTAGCATTTGGACTATGCAGATTGATCTTGTTGGTCTGAAATTTTAGATTCGTTTCAGGAAAAAAGAAGAGAAGTTTTGTGAGAAACAAGATAGAATGTAGTATGTTTGATCCGGATCAACTTATCATAAAACCATTCATGTTTCTTTTGTTATATACTTTTGTTGTTTGTGTAAGAGATGTCTTGTAGGCATACCCTTGAGTTAGAACTGTACATAAGAGTTCTTATATGTTAATTGGATTTAGAAGTCAAATGTTTTGCGCCACAATAGGACAGTACATGGATGTAAATTATAATGGAGGAAGGCTTGACAGCTGACGATGACAATCCTCCTAGGCTAAACATTACTATTATTATTAAAAAAGAATTATTGAGAAACCTGGCTGTCATTGAGAAGAAAAGAAATACATGGACATACAAAAAGGGAGTCGACTACAAGAAGGGACTTCAGTCAATTAGAATGAGTATACTCGTAAACAAAATTGAGTCGGAGTAAGCTCTTCTATTTATTGCGACTTGTCGGAGTGTTTCTAAGGCATGTGGGAAAGTGCATGCTTATGGAGTTTAGGTCAATTTTGTACAATGTTTTGGTCATTTGGTCATTTGGTCATTTGGTCATTGGTGGACAACAGATGAAATTACACTCTTCATGTAAACATATGTGACTCCCCTCATTTTTCTGGCAATTTTGTGGGGACTTAACTGATTAAAGATTATGCTGTTATAAATACTTACGCGTGTACCTCTGCATTCTCTTCGTTTCTTGTTTCGTTCTTTAACTCTGTGTCTCGGACATTGATTTCTTGCTTTTTGCCAGTGGGAAAGAGACCGAGTTCCCGATTGAACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGAAATGTGACCTCCGTGCAACCTTCCAGATAGAACCATTTGACATTATAATCAGGTGGCAATTATTGTAGGGATAAATGTTGGGTATTTTTGTACTTAGCTAGCCTCACTGAGATGACTTATAGAATACACTTGAAACATCTATGTTTCCATAACCTTTTGTTTTAAGGAGATATTGGTCGATGGTTCTTCAGAAGGTAAAGTACTTGTGTTGTGGGACTCTAAATTTTGGATGAAAGGATTTTGTGAGATCCTACGACGGTTGAAAAGGGAAACGAAACATTCCTTATAAGCGTGTGGAAACCTCTTCCTAGCATACGCGTTTTAAAACGGTGAGGCTGACGACGATACATAACCGACCAAAGCGGACAATATCTGCTAGCGGTGGGCTTGGGCTGTTATTATTGATTAAATCAATGAAACTTTAGGAGTCTGAAGAATCACTCTTTGGGCCCATTTTGATAGACCCTAGACTCTTCATTGAAGAGAAAATGCAATAAATACCTACGAATGAGTAGAATAGAATCTCCTATGGCATCCATTGTACAATCTTATCATCTTGGATCCAAAAGAGAGGAAGGGGGAAGAGAAGGTGTTGTGCGTGTAGTGAGGATTAATAAAAATCTACACTGATAATATATTCTCGG

mRNA sequence

TTTTAACGAAAATTTGGTTGCAACGTGAAGAAAGCGAGGGGAAGAGGAATATCTCTCATTTCTGCAAAATAGTTCAGAGCCAAATGAAGAAGGAAGAGACTGTGAAATTGATCAGCGCTGAGGGTTTCGAGTTCTTGATCCACAAGGATGCTGCCATGGTTTCTCAGACCATTCGAAACATGCTTACTTCCCCAGGTAATTTTGCTGAATCGCAACACAGAGAAGTGACTTTTCCTGAGATTAGTACCACCATTCTCGAGAAGATTTGCCAATATTTTTACTGGAATCTTCAATTCGCCAGTGGGAAAGAGACCGAGTTCCCGATTGAACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGAAATGTGACCTCCGTGCAACCTTCCAGATAGAACCATTTGACATTATAATCAGGTGGCAATTATTGTAGGGATAAATGTTGGGTATTTTTGTACTTAGCTAGCCTCACTGAGATGACTTATAGAATACACTTGAAACATCTATGTTTCCATAACCTTTTGTTTTAAGGAGATATTGGTCGATGGTTCTTCAGAAGGTAAAGTACTTGTGTTGTGGGACTCTAAATTTTGGATGAAAGGATTTTGTGAGATCCTACGACGGTTGAAAAGGGAAACGAAACATTCCTTATAAGCGTGTGGAAACCTCTTCCTAGCATACGCGTTTTAAAACGGTGAGGCTGACGACGATACATAACCGACCAAAGCGGACAATATCTGCTAGCGGTGGGCTTGGGCTGTTATTATTGATTAAATCAATGAAACTTTAGGAGTCTGAAGAATCACTCTTTGGGCCCATTTTGATAGACCCTAGACTCTTCATTGAAGAGAAAATGCAATAAATACCTACGAATGAGTAGAATAGAATCTCCTATGGCATCCATTGTACAATCTTATCATCTTGGATCCAAAAGAGAGGAAGGGGGAAGAGAAGGTGTTGTGCGTGTAGTGAGGATTAATAAAAATCTACACTGATAATATATTCTCGG

Coding sequence (CDS)

ATGAAGAAGGAAGAGACTGTGAAATTGATCAGCGCTGAGGGTTTCGAGTTCTTGATCCACAAGGATGCTGCCATGGTTTCTCAGACCATTCGAAACATGCTTACTTCCCCAGGTAATTTTGCTGAATCGCAACACAGAGAAGTGACTTTTCCTGAGATTAGTACCACCATTCTCGAGAAGATTTGCCAATATTTTTACTGGAATCTTCAATTCGCCAGTGGGAAAGAGACCGAGTTCCCGATTGAACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGA
Homology
[Close]
BLAST of CmoCh13G001020 vs. Swiss-Prot
Match: ELOC_HUMAN (Transcription elongation factor B polypeptide 1 OS=Homo sapiens GN=TCEB1 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-18
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 1 

Query: 7   VKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFY 66
           VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF 
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 67  WNLQF--ASGKETEFPIEPELTLELMMAANYL 97
           + +++  +S +  EFPI PE+ LEL+MAAN+L
Sbjct: 79  YKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110

[Close]
BLAST of CmoCh13G001020 vs. Swiss-Prot
Match: ELOC_MOUSE (Transcription elongation factor B polypeptide 1 OS=Mus musculus GN=Tceb1 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-18
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 1 

Query: 7   VKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFY 66
           VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF 
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 67  WNLQF--ASGKETEFPIEPELTLELMMAANYL 97
           + +++  +S +  EFPI PE+ LEL+MAAN+L
Sbjct: 79  YKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110

[Close]
BLAST of CmoCh13G001020 vs. Swiss-Prot
Match: ELOC_RAT (Transcription elongation factor B polypeptide 1 OS=Rattus norvegicus GN=Tceb1 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-18
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 1 

Query: 7   VKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFY 66
           VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF 
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 67  WNLQF--ASGKETEFPIEPELTLELMMAANYL 97
           + +++  +S +  EFPI PE+ LEL+MAAN+L
Sbjct: 79  YKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110

[Close]
BLAST of CmoCh13G001020 vs. Swiss-Prot
Match: ELOC_BOVIN (Transcription elongation factor B polypeptide 1 OS=Bos taurus GN=TCEB1 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-18
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 1 

Query: 7   VKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFY 66
           VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF 
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 67  WNLQF--ASGKETEFPIEPELTLELMMAANYL 97
           + +++  +S +  EFPI PE+ LEL+MAAN+L
Sbjct: 79  YKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110

[Close]
BLAST of CmoCh13G001020 vs. Swiss-Prot
Match: ELOC_SCHPO (Elongin-C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=elc1 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.0e-15
Identity = 41/95 (43.16%), Postives = 66/95 (69.47%), Query Frame = 1 

Query: 3  KEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKIC 62
          ++E V+LIS +GF F++ K+ A +S TIR +L   G F+E+Q  E TFP+I  T+LEK+C
Sbjct: 2  EKEYVRLISGDGFVFILEKEIACLSGTIRAILNE-GIFSEAQKNECTFPDIRATLLEKVC 61

Query: 63 QYFYWNLQFASGKE-TEFPIEPELTLELMMAANYL 97
          +Y ++N ++ +  +  +F I PE+ LEL++ A YL
Sbjct: 62 EYLHYNYRYKNQLDIPKFDIPPEMVLELLVTAEYL 95

[Close]
BLAST of CmoCh13G001020 vs. TrEMBL
Match: A0A0A0LY44_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G525280 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.6e-47
Identity = 95/98 (96.94%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKE+TVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]
BLAST of CmoCh13G001020 vs. TrEMBL
Match: W9S530_9ROSA (Transcription elongation factor B polypeptide 1 OS=Morus notabilis GN=L484_025322 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 4.8e-44
Identity = 88/98 (89.80%), Postives = 96/98 (97.96%), Query Frame = 1 

Query: 1  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          M+KE+TVKLISAEGFEF++HKDAAMVSQTIRNMLTSPG+FAE+QH EVTFPEISTTILEK
Sbjct: 1  MRKEDTVKLISAEGFEFVVHKDAAMVSQTIRNMLTSPGSFAETQHGEVTFPEISTTILEK 60

Query: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          IC+YFYWNL+FASGKETEF IEPELTLELMMAANYLHT
Sbjct: 61 ICKYFYWNLEFASGKETEFHIEPELTLELMMAANYLHT 98

[Close]
BLAST of CmoCh13G001020 vs. TrEMBL
Match: B9HPC0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s04270g PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 6.2e-44
Identity = 87/98 (88.78%), Postives = 97/98 (98.98%), Query Frame = 1 

Query: 1  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          M+KE+TVKLISAEGFEF+IHK+AAMVSQTIRNMLTSPG+FAE++H EVTFPEISTTILEK
Sbjct: 1  MRKEDTVKLISAEGFEFVIHKEAAMVSQTIRNMLTSPGSFAETEHGEVTFPEISTTILEK 60

Query: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYFYW+LQ+A+GKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFYWSLQYANGKETEFPIEPELTLELMMAANYLHT 98

[Close]
BLAST of CmoCh13G001020 vs. TrEMBL
Match: A0A151SUN8_CAJCA (Transcription elongation factor B polypeptide 1 OS=Cajanus cajan GN=KK1_013919 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.4e-43
Identity = 88/98 (89.80%), Postives = 94/98 (95.92%), Query Frame = 1 

Query: 1  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKE+TVKLISAEGFEF++ K+AAMVSQTI NMLTSPG+FAE QH EVTFPEISTTILEK
Sbjct: 1  MKKEDTVKLISAEGFEFVVDKEAAMVSQTIHNMLTSPGSFAERQHGEVTFPEISTTILEK 60

Query: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYFYW+LQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]
BLAST of CmoCh13G001020 vs. TrEMBL
Match: V7BWG8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G146900g PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.4e-43
Identity = 88/98 (89.80%), Postives = 94/98 (95.92%), Query Frame = 1 

Query: 1   MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
           MKKE+TVKLISAEGFEF++ K+AAMVSQTI NMLTSPG+FAE QH EVTFPEISTTILEK
Sbjct: 48  MKKEDTVKLISAEGFEFVVDKEAAMVSQTIHNMLTSPGSFAERQHGEVTFPEISTTILEK 107

Query: 61  ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
           ICQYFYW+LQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 108 ICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT 145

[Close]
BLAST of CmoCh13G001020 vs. TAIR10
Match: AT5G59140.1 (AT5G59140.1 BTB/POZ domain-containing protein)

HSP 1 Score: 157.5 bits (397), Expect = 4.1e-39
Identity = 76/94 (80.85%), Postives = 86/94 (91.49%), Query Frame = 1 

Query: 5  ETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQY 64
          ETVKLIS EGFEF+I ++AAMVSQTIR+MLTSPG F+ES+   VTFP+ISTTILEKICQY
Sbjct: 3  ETVKLISMEGFEFVIDREAAMVSQTIRSMLTSPGGFSESKDGVVTFPDISTTILEKICQY 62

Query: 65 FYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          FYW+LQ++ GKETEF IEPELTLELMMAANYLHT
Sbjct: 63 FYWSLQYSRGKETEFHIEPELTLELMMAANYLHT 96

[Close]
BLAST of CmoCh13G001020 vs. NCBI nr
Match: gi|449455078|ref|XP_004145280.1| (PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 2.3e-47
Identity = 95/98 (96.94%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKE+TVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]
BLAST of CmoCh13G001020 vs. NCBI nr
Match: gi|1009114731|ref|XP_015873844.1| (PREDICTED: transcription elongation factor B polypeptide 1 [Ziziphus jujuba])

HSP 1 Score: 185.3 bits (469), Expect = 5.2e-44
Identity = 89/98 (90.82%), Postives = 96/98 (97.96%), Query Frame = 1 

Query: 1  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          M+KE+TVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPG+FAE++H EVTFPEISTTILEK
Sbjct: 1  MRKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGSFAETEHGEVTFPEISTTILEK 60

Query: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          IC+YFYWNLQFASGKETEF IEPELTLELMMAANYLHT
Sbjct: 61 ICKYFYWNLQFASGKETEFHIEPELTLELMMAANYLHT 98

[Close]
BLAST of CmoCh13G001020 vs. NCBI nr
Match: gi|703137802|ref|XP_010106562.1| (Transcription elongation factor B polypeptide 1 [Morus notabilis])

HSP 1 Score: 184.9 bits (468), Expect = 6.8e-44
Identity = 88/98 (89.80%), Postives = 96/98 (97.96%), Query Frame = 1 

Query: 1  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          M+KE+TVKLISAEGFEF++HKDAAMVSQTIRNMLTSPG+FAE+QH EVTFPEISTTILEK
Sbjct: 1  MRKEDTVKLISAEGFEFVVHKDAAMVSQTIRNMLTSPGSFAETQHGEVTFPEISTTILEK 60

Query: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          IC+YFYWNL+FASGKETEF IEPELTLELMMAANYLHT
Sbjct: 61 ICKYFYWNLEFASGKETEFHIEPELTLELMMAANYLHT 98

[Close]
BLAST of CmoCh13G001020 vs. NCBI nr
Match: gi|224106387|ref|XP_002314149.1| (hypothetical protein POPTR_0009s04270g [Populus trichocarpa])

HSP 1 Score: 184.5 bits (467), Expect = 8.9e-44
Identity = 87/98 (88.78%), Postives = 97/98 (98.98%), Query Frame = 1 

Query: 1  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          M+KE+TVKLISAEGFEF+IHK+AAMVSQTIRNMLTSPG+FAE++H EVTFPEISTTILEK
Sbjct: 1  MRKEDTVKLISAEGFEFVIHKEAAMVSQTIRNMLTSPGSFAETEHGEVTFPEISTTILEK 60

Query: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYFYW+LQ+A+GKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFYWSLQYANGKETEFPIEPELTLELMMAANYLHT 98

[Close]
BLAST of CmoCh13G001020 vs. NCBI nr
Match: gi|657987710|ref|XP_008386018.1| (PREDICTED: transcription elongation factor B polypeptide 1 [Malus domestica])

HSP 1 Score: 184.5 bits (467), Expect = 8.9e-44
Identity = 87/98 (88.78%), Postives = 96/98 (97.96%), Query Frame = 1 

Query: 1  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKE+TVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPG+F+E++H EVTFPEISTTILEK
Sbjct: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGSFSETEHGEVTFPEISTTILEK 60

Query: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          IC+YFYWNLQ+ASGK+TEFPIEPEL LELMMAANYLHT
Sbjct: 61 ICKYFYWNLQYASGKQTEFPIEPELVLELMMAANYLHT 98

The following BLAST results are available for this feature:
BLAST of CmoCh13G001020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ELOC_HUMAN1.3e-1847.83Transcription elongation factor B polypeptide 1 OS=Homo sapiens GN=TCEB1 PE=1 SV... [more]
ELOC_MOUSE1.3e-1847.83Transcription elongation factor B polypeptide 1 OS=Mus musculus GN=Tceb1 PE=1 SV... [more]
ELOC_RAT1.3e-1847.83Transcription elongation factor B polypeptide 1 OS=Rattus norvegicus GN=Tceb1 PE... [more]
ELOC_BOVIN1.3e-1847.83Transcription elongation factor B polypeptide 1 OS=Bos taurus GN=TCEB1 PE=3 SV=1[more]
ELOC_SCHPO1.0e-1543.16Elongin-C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=elc1 PE=3 SV... [more]
BLAST of CmoCh13G001020 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LY44_CUCSA1.6e-4796.94Uncharacterized protein OS=Cucumis sativus GN=Csa_1G525280 PE=3 SV=1[more]
W9S530_9ROSA4.8e-4489.80Transcription elongation factor B polypeptide 1 OS=Morus notabilis GN=L484_02532... [more]
B9HPC0_POPTR6.2e-4488.78Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s04270g PE=3 SV=1[more]
A0A151SUN8_CAJCA2.4e-4389.80Transcription elongation factor B polypeptide 1 OS=Cajanus cajan GN=KK1_013919 P... [more]
V7BWG8_PHAVU2.4e-4389.80Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G146900g PE=3 SV=1[more]
BLAST of CmoCh13G001020 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G59140.14.1e-3980.85 BTB/POZ domain-containing protein[more]
BLAST of CmoCh13G001020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449455078|ref|XP_004145280.1|2.3e-4796.94PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis sativus][more]
gi|1009114731|ref|XP_015873844.1|5.2e-4490.82PREDICTED: transcription elongation factor B polypeptide 1 [Ziziphus jujuba][more]
gi|703137802|ref|XP_010106562.1|6.8e-4489.80Transcription elongation factor B polypeptide 1 [Morus notabilis][more]
gi|224106387|ref|XP_002314149.1|8.9e-4488.78hypothetical protein POPTR_0009s04270g [Populus trichocarpa][more]
gi|657987710|ref|XP_008386018.1|8.9e-4488.78PREDICTED: transcription elongation factor B polypeptide 1 [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001232SKP1-like
IPR011333SKP1/BTB/POZ_sf
IPR016073Skp1_comp_POZ
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009062 fatty acid catabolic process
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0006366 transcription from RNA polymerase II promoter
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter
biological_process GO:0016567 protein ubiquitination
biological_process GO:0006414 translational elongation
cellular_component GO:0005829 cytosol
cellular_component GO:0005840 ribosome
cellular_component GO:0070449 elongin complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0004842 ubiquitin-protein transferase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G001020.1CmoCh13G001020.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001232S-phase kinase-associated protein 1-likeSMARTSM00512skp1_3coord: 4..98
score: 1.
IPR011333SKP1/BTB/POZ domainunknownSSF54695POZ domaincoord: 3..97
score: 1.96
IPR016073SKP1 component, POZ domainPFAMPF03931Skp1_POZcoord: 6..67
score: 1.
NoneNo IPR availableGENE3DG3DSA:3.30.710.10coord: 6..97
score: 4.7
NoneNo IPR availablePANTHERPTHR20648FAMILY NOT NAMEDcoord: 1..98
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh13G001020Cucsa.146580Cucumber (Gy14) v1cgycmoB0402
CmoCh13G001020CmaCh13G001030Cucurbita maxima (Rimu)cmacmoB218
CmoCh13G001020CmaCh01G006280Cucurbita maxima (Rimu)cmacmoB458
CmoCh13G001020Cla008209Watermelon (97103) v1cmowmB173
CmoCh13G001020Csa1G525280Cucumber (Chinese Long) v2cmocuB204
CmoCh13G001020MELO3C020599Melon (DHL92) v3.5.1cmomeB181
CmoCh13G001020ClCG03G001200Watermelon (Charleston Gray)cmowcgB184
CmoCh13G001020CSPI01G23410Wild cucumber (PI 183967)cmocpiB206
CmoCh13G001020Lsi02G013290Bottle gourd (USVL1VR-Ls)cmolsiB191
CmoCh13G001020Cp4.1LG20g08320Cucurbita pepo (Zucchini)cmocpeB202
CmoCh13G001020Cp4.1LG00g03630Cucurbita pepo (Zucchini)cmocpeB181
CmoCh13G001020Cp4.1LG02g13590Cucurbita pepo (Zucchini)cmocpeB205
CmoCh13G001020Cp4.1LG02g11630Cucurbita pepo (Zucchini)cmocpeB207
CmoCh13G001020MELO3C020599.2Melon (DHL92) v3.6.1cmomedB203
CmoCh13G001020CsaV3_1G035700Cucumber (Chinese Long) v3cmocucB0236
CmoCh13G001020Cla97C03G052050Watermelon (97103) v2cmowmbB209
CmoCh13G001020Bhi08G000478Wax gourdcmowgoB0245
CmoCh13G001020CsGy1G022890Cucumber (Gy14) v2cgybcmoB069
CmoCh13G001020Carg12395Silver-seed gourdcarcmoB0594
CmoCh13G001020Carg20635Silver-seed gourdcarcmoB0517
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh13G001020CmoCh01G006580Cucurbita moschata (Rifu)cmocmoB173
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh13G001020Bottle gourd (USVL1VR-Ls)cmolsiB186
CmoCh13G001020Melon (DHL92) v3.6.1cmomedB198
CmoCh13G001020Silver-seed gourdcarcmoB0212
CmoCh13G001020Cucumber (Chinese Long) v3cmocucB0244
CmoCh13G001020Cucumber (Chinese Long) v3cmocucB0253
CmoCh13G001020Watermelon (97103) v2cmowmbB204
CmoCh13G001020Wax gourdcmowgoB0238
CmoCh13G001020Cucurbita moschata (Rifu)cmocmoB180
CmoCh13G001020Cucurbita moschata (Rifu)cmocmoB189
CmoCh13G001020Cucumber (Gy14) v1cgycmoB0384
CmoCh13G001020Cucurbita maxima (Rimu)cmacmoB577
CmoCh13G001020Wild cucumber (PI 183967)cmocpiB217
CmoCh13G001020Cucumber (Chinese Long) v2cmocuB214
CmoCh13G001020Melon (DHL92) v3.5.1cmomeB178
CmoCh13G001020Watermelon (Charleston Gray)cmowcgB180
CmoCh13G001020Watermelon (97103) v1cmowmB197