Carg12395 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12395
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	transcription elongation factor B polypeptide 1
Location	Cucurbita_argyrosperma_scaffold_074 : 737189 .. 738658 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGGAAGATACTGTAAAATTGATCAGCGCCGAGGGTTTCGAGTTCGTGATTCACAAGGACGCTGCCATGGTTTCTCAGACGATTCGGAATATGCTTACTTCGCCAGGTCTCTCTCCCATTCTCATACCGTCTCGATCAATTCACTTTTTGAGACTTACGATCTCGTTGTTGCTTATCTGTAAAGAAGAATGAATTTGGTGAAATCTTGGAACGATTGTTTTCTTTTGAAAATTTCTTGTTTAATTAGGGCTTTGTTTGACTGTCTTAGTTTTCTTGTATAGGAAATTTTGCTGAATCGCAGCACAGAGAAGTGACTTTTCCTGAGATTAGCACTCCCATTCTCGAGAAGATTTGCCAATACTTTTACTGGCATCTTCAATTCGCCAGGTTTTCGTTTCTTTTTCCCGTCAAATTTTCTTTAGTTCTGATTAATCCGAGTGAATGTCTGGCAAATTAAGATGTTGGCATGTTCCATCGCTAATATTTTGGATTTTAGGTTCTGGTAATTTTTCGTAAACTGGTACTTTGTTGATTATATTATTGAAAACGTGTCTGTTCTTTCACTTTTATTTCTGGAATTGCTTGTTAACGAAGGACTGCATCCTCACCAATTTATTGAAAATAGAAACTATAGCGCGGGGCATCTAGTTCTGCCATTTGGACCGGCAGATTGATCTTGATGGTCTGAAAAATTGTTTCCTTTTAGGGATAAAAGAAAAGTTTTCTGTGAAACCAGATAGCATGTAATGTCTGCATCACTGTTTGGTTCGGATCAACTTATCTCAACAATTTTTATGTTGCTGTTGTTATGTACTTTTTGTTGTCTGCGTAAGAGAGTTCTCGAAGGCAAACTTAAGTTAGATGAAGTAGTACAGATAGAGTTCTTACAAGTTAATTGGATTAGGAGCCAAATGTTTTGCACCTCATTGGACAGTACATGGGTGTACATGAAGAAAGGTTAGACGGCTGATAATGTCAAGCCTCTAGATTAGATCTCGCTGGTCGCACCCATTTAAAACATTATACTTAAACACATAAACAGAATTGAGTTAGAGTAGGCTTTTCTCTAACTTACCAGAGTGTTTTTATGTCTTGTGTAGAATGCTCATGAATTTTGGTAAATTTTGTTTGAAGCTTTGGATGGATAAGTGTGTAAACGTTTAGGGCATTGGTGGACATTACTCACCCTAGCTTTTTGGCAATTTATGGGATTGGGAATTCAACCAATTAAAGATAAATGTTGTTTGTAAATACTTATATATATACATACCTCTGTATTCTCTTTGGTTCTTATTTTCATTCTCACAAAGAACAAAAGTTTTTCCTACAATTCGTAGAACGACTAAATCTGTTGCCATGTTTATTGATTTCTTCCTTTTTGTCAGTGGGAAAGAGACCGAGTTCCCTATTGAACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGA

mRNA sequence

ATGAAGAAGGAAGATACTGTAAAATTGATCAGCGCCGAGGGTTTCGAGTTCGTGATTCACAAGGACGCTGCCATGGTTTCTCAGACGATTCGGAATATGCTTACTTCGCCAGGAAATTTTGCTGAATCGCAGCACAGAGAAGTGACTTTTCCTGAGATTAGCACTCCCATTCTCGAGAAGATTTGCCAATACTTTTACTGGCATCTTCAATTCGCCAGTGGGAAAGAGACCGAGTTCCCTATTGAACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGA

Coding sequence (CDS)

ATGAAGAAGGAAGATACTGTAAAATTGATCAGCGCCGAGGGTTTCGAGTTCGTGATTCACAAGGACGCTGCCATGGTTTCTCAGACGATTCGGAATATGCTTACTTCGCCAGGAAATTTTGCTGAATCGCAGCACAGAGAAGTGACTTTTCCTGAGATTAGCACTCCCATTCTCGAGAAGATTTGCCAATACTTTTACTGGCATCTTCAATTCGCCAGTGGGAAAGAGACCGAGTTCCCTATTGAACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGA

Protein sequence

MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT

Homology

[Close]

BLAST of Carg12395 vs. NCBI nr
Match: XP_022948640.1 (elongin-C-like [Cucurbita moschata] >XP_022948641.1 elongin-C-like [Cucurbita moschata] >XP_022948642.1 elongin-C-like [Cucurbita moschata] >XP_022998913.1 elongin-C-like [Cucurbita maxima] >XP_022998914.1 elongin-C-like [Cucurbita maxima] >XP_023523194.1 elongin-C-like [Cucurbita pepo subsp. pepo] >XP_023523196.1 elongin-C-like [Cucurbita pepo subsp. pepo] >XP_023523399.1 elongin-C-like [Cucurbita pepo subsp. pepo] >XP_023523400.1 elongin-C-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203.0 bits (515), Expect = 4.7e-49
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEK 60
          MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEK
Sbjct: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEK 60

Query: 61 ICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of Carg12395 vs. NCBI nr
Match: XP_004145280.1 (PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis sativus] >XP_008457436.1 PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis melo] >XP_008457437.1 PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis melo] >XP_011658328.1 PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis sativus] >KGN65757.1 hypothetical protein Csa_1G525280 [Cucumis sativus])

HSP 1 Score: 195.3 bits (495), Expect = 9.8e-47
Identity = 95/98 (96.94%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEK 60
          MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEIST ILEK
Sbjct: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYF+W+LQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of Carg12395 vs. NCBI nr
Match: XP_022964706.1 (elongin-C-like [Cucurbita moschata] >XP_023521052.1 elongin-C-like [Cucurbita pepo subsp. pepo] >XP_023519299.1 elongin-C-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194.5 bits (493), Expect = 1.7e-46
Identity = 94/98 (95.92%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEK 60
          MKKE+TVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEIST ILEK
Sbjct: 1  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYFYW+LQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of Carg12395 vs. NCBI nr
Match: XP_022158132.1 (elongin-C [Momordica charantia])

HSP 1 Score: 193.7 bits (491), Expect = 2.9e-46
Identity = 94/98 (95.92%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEK 60
          MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEIST ILEK
Sbjct: 1  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYF+W+LQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of Carg12395 vs. NCBI nr
Match: XP_022970584.1 (elongin-C-like [Cucurbita maxima])

HSP 1 Score: 190.3 bits (482), Expect = 3.2e-45
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEK 60
          MKKE TVKLISAEGFEF+IHKDAAMVSQTIR MLTSPGNFAESQHREVTFPEIST ILEK
Sbjct: 1  MKKEGTVKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYFYW+LQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of Carg12395 vs. TAIR10
Match: AT5G59140.1 (BTB/POZ domain-containing protein)

HSP 1 Score: 154.8 bits (390), Expect = 2.7e-38
Identity = 75/94 (79.79%), Postives = 84/94 (89.36%), Query Frame = 0


Query: 5  DTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQY 64
          +TVKLIS EGFEFVI ++AAMVSQTIR+MLTSPG F+ES+   VTFP+IST ILEKICQY
Sbjct: 3  ETVKLISMEGFEFVIDREAAMVSQTIRSMLTSPGGFSESKDGVVTFPDISTTILEKICQY 62

Query: 65 FYWHLQFASGKETEFPIEPELTLELMMAANYLHT 99
          FYW LQ++ GKETEF IEPELTLELMMAANYLHT
Sbjct: 63 FYWSLQYSRGKETEFHIEPELTLELMMAANYLHT 96

[Close]

BLAST of Carg12395 vs. Swiss-Prot
Match: sp|Q2KII4|ELOC_BOVIN (Elongin-C OS=Bos taurus OX=9913 GN=ELOC PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-18
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 7   VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFY 66
           VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF 
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 67  WHLQF--ASGKETEFPIEPELTLELMMAANYL 97
           + +++  +S +  EFPI PE+ LEL+MAAN+L
Sbjct: 79  YKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110

[Close]

BLAST of Carg12395 vs. Swiss-Prot
Match: sp|Q15369|ELOC_HUMAN (Elongin-C OS=Homo sapiens OX=9606 GN=ELOC PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-18
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 7   VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFY 66
           VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF 
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 67  WHLQF--ASGKETEFPIEPELTLELMMAANYL 97
           + +++  +S +  EFPI PE+ LEL+MAAN+L
Sbjct: 79  YKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110

[Close]

BLAST of Carg12395 vs. Swiss-Prot
Match: sp|P83940|ELOC_MOUSE (Elongin-C OS=Mus musculus OX=10090 GN=Eloc PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-18
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 7   VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFY 66
           VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF 
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 67  WHLQF--ASGKETEFPIEPELTLELMMAANYL 97
           + +++  +S +  EFPI PE+ LEL+MAAN+L
Sbjct: 79  YKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110

[Close]

BLAST of Carg12395 vs. Swiss-Prot
Match: sp|P83941|ELOC_RAT (Elongin-C OS=Rattus norvegicus OX=10116 GN=Eloc PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-18
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 7   VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFY 66
           VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF 
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 67  WHLQF--ASGKETEFPIEPELTLELMMAANYL 97
           + +++  +S +  EFPI PE+ LEL+MAAN+L
Sbjct: 79  YKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110

[Close]

BLAST of Carg12395 vs. Swiss-Prot
Match: sp|Q54Q05|ELOC_DICDI (Elongin-C OS=Dictyostelium discoideum OX=44689 GN=tceb1 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.8e-15
Identity = 40/97 (41.24%), Postives = 65/97 (67.01%), Query Frame = 0


Query: 5   DTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSP-GNFAESQHREVTFPEISTPILEKICQ 64
           D ++L S+ G EFV+ +  + VS TI++ML+    NF E Q+ E+ F EISTP+LEK+ Q
Sbjct: 13  DVLRLYSSTGHEFVLSRKMSYVSGTIKSMLSGDNSNFMEDQNNEIRFREISTPVLEKVIQ 72

Query: 65  YFYWHLQFASGKE--TEFPIEPELTLELMMAANYLHT 99
           YFY+  ++ +      EFPI  ++ ++L++AA++L T
Sbjct: 73  YFYFKNKYTNSTTDLPEFPINEKVVVDLLLAAHFLDT 109

[Close]

BLAST of Carg12395 vs. TrEMBL
Match: tr|A0A1S3C6T3|A0A1S3C6T3_CUCME (transcription elongation factor B polypeptide 1 OS=Cucumis melo OX=3656 GN=LOC103497125 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 6.5e-47
Identity = 95/98 (96.94%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEK 60
          MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEIST ILEK
Sbjct: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYF+W+LQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of Carg12395 vs. TrEMBL
Match: tr|A0A0A0LY44|A0A0A0LY44_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G525280 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 6.5e-47
Identity = 95/98 (96.94%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEK 60
          MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEIST ILEK
Sbjct: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYF+W+LQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of Carg12395 vs. TrEMBL
Match: tr|C6SWA0|C6SWA0_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100305702 PE=2 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 3.9e-44
Identity = 90/98 (91.84%), Postives = 93/98 (94.90%), Query Frame = 0


Query: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEK 60
          MKKEDTVKLISAEGFEFV+ K+AAMVSQTI NMLTSPG+FAE QH EVTFPEIST ILEK
Sbjct: 1  MKKEDTVKLISAEGFEFVVDKEAAMVSQTIHNMLTSPGSFAERQHGEVTFPEISTTILEK 60

Query: 61 ICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of Carg12395 vs. TrEMBL
Match: tr|V7BWG8|V7BWG8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G146900g PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 3.9e-44
Identity = 90/98 (91.84%), Postives = 93/98 (94.90%), Query Frame = 0


Query: 1   MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEK 60
           MKKEDTVKLISAEGFEFV+ K+AAMVSQTI NMLTSPG+FAE QH EVTFPEIST ILEK
Sbjct: 48  MKKEDTVKLISAEGFEFVVDKEAAMVSQTIHNMLTSPGSFAERQHGEVTFPEISTTILEK 107

Query: 61  ICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT 99
           ICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 108 ICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT 145

[Close]

BLAST of Carg12395 vs. TrEMBL
Match: tr|A0A151SUN8|A0A151SUN8_CAJCA (Transcription elongation factor B polypeptide 1 OS=Cajanus cajan OX=3821 GN=KK1_013919 PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 3.9e-44
Identity = 90/98 (91.84%), Postives = 93/98 (94.90%), Query Frame = 0


Query: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEK 60
          MKKEDTVKLISAEGFEFV+ K+AAMVSQTI NMLTSPG+FAE QH EVTFPEIST ILEK
Sbjct: 1  MKKEDTVKLISAEGFEFVVDKEAAMVSQTIHNMLTSPGSFAERQHGEVTFPEISTTILEK 60

Query: 61 ICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT 98

The following BLAST results are available for this feature:

BLAST of Carg12395 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948640.1	4.7e-49	100.00	elongin-C-like [Cucurbita moschata] >XP_022948641.1 elongin-C-like [Cucurbita mo...	[more]
XP_004145280.1	9.8e-47	96.94	PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis sativus] >XP...	[more]
XP_022964706.1	1.7e-46	95.92	elongin-C-like [Cucurbita moschata] >XP_023521052.1 elongin-C-like [Cucurbita pe...	[more]
XP_022158132.1	2.9e-46	95.92	elongin-C [Momordica charantia]	[more]
XP_022970584.1	3.2e-45	94.90	elongin-C-like [Cucurbita maxima]	[more]

BLAST of Carg12395 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G59140.1	2.7e-38	79.79	BTB/POZ domain-containing protein	[more]

BLAST of Carg12395 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q2KII4\|ELOC_BOVIN	1.3e-18	47.83	Elongin-C OS=Bos taurus OX=9913 GN=ELOC PE=3 SV=1	[more]
sp\|Q15369\|ELOC_HUMAN	1.3e-18	47.83	Elongin-C OS=Homo sapiens OX=9606 GN=ELOC PE=1 SV=1	[more]
sp\|P83940\|ELOC_MOUSE	1.3e-18	47.83	Elongin-C OS=Mus musculus OX=10090 GN=Eloc PE=1 SV=1	[more]
sp\|P83941\|ELOC_RAT	1.3e-18	47.83	Elongin-C OS=Rattus norvegicus OX=10116 GN=Eloc PE=1 SV=1	[more]
sp\|Q54Q05\|ELOC_DICDI	6.8e-15	41.24	Elongin-C OS=Dictyostelium discoideum OX=44689 GN=tceb1 PE=3 SV=1	[more]

BLAST of Carg12395 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C6T3\|A0A1S3C6T3_CUCME	6.5e-47	96.94	transcription elongation factor B polypeptide 1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0LY44\|A0A0A0LY44_CUCSA	6.5e-47	96.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G525280 PE=3 SV=1	[more]
tr\|C6SWA0\|C6SWA0_SOYBN	3.9e-44	91.84	Uncharacterized protein OS=Glycine max OX=3847 GN=100305702 PE=2 SV=1	[more]
tr\|V7BWG8\|V7BWG8_PHAVU	3.9e-44	91.84	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G146900g PE=3 ...	[more]
tr\|A0A151SUN8\|A0A151SUN8_CAJCA	3.9e-44	91.84	Transcription elongation factor B polypeptide 1 OS=Cajanus cajan OX=3821 GN=KK1_...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006511	ubiquitin-dependent protein catabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR011333	SKP1/BTB/POZ_sf
IPR016073	Skp1_comp_POZ
IPR001232	SKP1-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12395-RA	Carg12395-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 4..98 e-value: 1.4E-8 score: 44.5
None	No IPR available	GENE3D	G3DSA:3.30.710.10		coord: 5..97 e-value: 4.3E-27 score: 96.5
None	No IPR available	PANTHER	PTHR20648	FAMILY NOT NAMED	coord: 2..98
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 6..69 e-value: 1.5E-8 score: 34.6
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	SSF54695	POZ domain	coord: 6..97

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12395	Cla008209	Watermelon (97103) v1	carwmB0440
Carg12395	Csa1G525280	Cucumber (Chinese Long) v2	carcuB0471
Carg12395	MELO3C020599	Melon (DHL92) v3.5.1	carmeB0449
Carg12395	ClCG03G001200	Watermelon (Charleston Gray)	carwcgB0436
Carg12395	CSPI01G23410	Wild cucumber (PI 183967)	carcpiB0476
Carg12395	Cucsa.146580	Cucumber (Gy14) v1	carcgyB0509
Carg12395	CmaCh01G006280	Cucurbita maxima (Rimu)	carcmaB0613
Carg12395	CmaCh13G001030	Cucurbita maxima (Rimu)	carcmaB0610
Carg12395	CmoCh13G001020	Cucurbita moschata (Rifu)	carcmoB0594
Carg12395	CmoCh01G006580	Cucurbita moschata (Rifu)	carcmoB0596
Carg12395	Lsi02G013290	Bottle gourd (USVL1VR-Ls)	carlsiB403
Carg12395	Cp4.1LG02g11630	Cucurbita pepo (Zucchini)	carcpeB0623
Carg12395	Cp4.1LG02g13590	Cucurbita pepo (Zucchini)	carcpeB0622
Carg12395	Cp4.1LG20g08320	Cucurbita pepo (Zucchini)	carcpeB0620
Carg12395	CsGy1G022890	Cucumber (Gy14) v2	carcgybB0448
Carg12395	MELO3C020599.2	Melon (DHL92) v3.6.1	carmedB0451
Carg12395	CsaV3_1G035700	Cucumber (Chinese Long) v3	carcucB0473
Carg12395	Cla97C03G052050	Watermelon (97103) v2	carwmbB0467
Carg12395	Bhi08G000478	Wax gourd	carwgoB0535

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg12395	Carg20635	Silver-seed gourd	carcarB408

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12395	Silver-seed gourd	carcarB192
Carg12395	Silver-seed gourd	carcarB449
Carg12395	Cucumber (Gy14) v2	carcgybB0452
Carg12395	Cucumber (Gy14) v2	carcgybB0450
Carg12395	Cucumber (Gy14) v1	carcgyB0510
Carg12395	Cucurbita maxima (Rimu)	carcmaB0612
Carg12395	Cucurbita moschata (Rifu)	carcmoB0595
Carg12395	Cucurbita pepo (Zucchini)	carcpeB0619
Carg12395	Wild cucumber (PI 183967)	carcpiB0478
Carg12395	Cucumber (Chinese Long) v2	carcuB0473
Carg12395	Cucumber (Chinese Long) v3	carcucB0472
Carg12395	Cucumber (Chinese Long) v3	carcucB0475
Carg12395	Bottle gourd (USVL1VR-Ls)	carlsiB405
Carg12395	Melon (DHL92) v3.5.1	carmeB0450
Carg12395	Melon (DHL92) v3.6.1	carmedB0453
Carg12395	Watermelon (Charleston Gray)	carwcgB0431
Carg12395	Watermelon (97103) v1	carwmB0438
Carg12395	Watermelon (97103) v1	carwmB0441
Carg12395	Watermelon (97103) v2	carwmbB0463