Cp4.1LG20g08320 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG20g08320
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTranscription elongation factor B polypeptide 1
LocationCp4.1LG20 : 7565889 .. 7567766 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCCAAATGAAGAAGGAAGAGACTGTGAAATTGATCAGCGCTGAGGGTTTCGAGTTCCTGATCCACAAGGATGCTGCCATGGTTTCTCAGACCATTCGAAACATGCTTACTTCCCCAGGTCTCCCTCTCTCTGTTGATCAATCCACTTTTTGAGCCTTACGATCTAGTTTTTCATTTCTTGCTCATGTATGGAGAAGAATGAATTAGGTGAAATCTAGGAATTGTTGTTTTGTTTTGAAATTTTCATGTTTAGGGCTTTGTTTTACTATTTTAGTTTTTATGGATAGGTAATTTTGCTGAATCGCAACACAGAGAAGTGACTTTTCCTGAGATTAGCACCACCATTCTCGAGAAGATTTGCCAATATTTTTACTGGAATCTTCAGTTCGCCAGGTTTTTGTTTCTTTTTTATGTCGACTTTTCTCTAATTATGATTAGTCTGAGATGAATTGCCTGAATTTCTAGCAAAGTAAAATGCTGATGTTTCCTTGTTATTATTTCGGATTTCAGGCTCCGGTAGTTTTTCTTAAACTGGTCCTCTTCCAATGATTACTAATTGAAAGTGTAAATCGTTTACACTGAATCACGTGGGAATGAAACTTTTGATGCTTAGTGTCTGATAAAGATATTAGTTATGGATGTTATTGTAGTTCTTGTTACTATTCTGGTCCATGATCTTGGTCTCTTTACTCTTTTTCGTTTTTTTTTTTTTTTTTTTGGAATTGGTTGTTAACGTAGGGCTGCATCCTCTCCAATTAATTGATAATAGAAACAAAGCGTAGGGCGTCTAGCATTTGGACTATGCAGATTGATCTTGTTGGTCTGAAATTTTAGATTCGTTTCAGGAAAAAAGAGAAGTTTTCTGAGAAACAAGATAGAATGTAGTATATTTGATCCGGATCAACTTATCATAAAACCATTCATGTTTCTTTTGTTATATACTTTTGTTGTTTGTGTAAGAGATGTCTTGTAGGCATACCCTTGANTGTTTGATCCGGATCAACTTATCATAAAACCATTCATGTTTCTTTTGTTATATACATTTGTTGTTTGTGTAAGAGATGTCTTGTAGGCATACCCTTGAGTTAGAACTGTAGATAAGAGTTCTTACATGTTAATTGGATTTAGAAGTCAAATGTTTTGCGCCACAATAGGACAGTACATGGATGTAAATTATAATGGAGGAAGGCTTGACAGCTGACGATGACAATCCTCCTAGGCTAAACATTACTATTGTTATTAAAAAAATTAATGAGAAACCTGGCTGTCATTGAGAAAAAAAAAATACATGGACATACAAAAAGGGAGTCGACTACAAGAAGGGACTTCAGTCAATTAGAATGAGTATACTCGTAAACAAAATTGAGTCGGAGTAAGCTCTACTATTTATTGCGACTTGTCGGAGTGTTTTGAAGGCATGTGGGAAAGTGCATGCTTATGGAGTTTAGGTCAACTTTGTACAATGTTTTGGTCATTTGGTCATTGGTGGACAACAGNTTTTCTATTTATTGCGACTTGTCGGAGTGTTTTTAAGGCATGTGGGAAAGTGCATGCTTATGGAGTTTAGGTCAATTTTGTACAATGTTTTGGTCATTTGGTCATTGGTGGACAACAGATGAAATTACACTCTTCATGTAAACATATGTGACTCCCCTCATTTTTCTGCAATTTTGTGGGGACTTAACTGATTAAAGATTATGTTGTTGTAAATACTTATGCGTGTACCTCTGCATTCTCTTCGATTCTTGTTTCGTTCTTTAACTCTGTGTCTCGGACATTGATTTCTTGCTTTTTGCCAGTGGGAAAGAGACCGAGTTCCCGATTGAACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGA

mRNA sequence

AGCCAAATGAAGAAGGAAGAGACTGTGAAATTGATCAGCGCTGAGGGTTTCGAGTTCCTGATCCACAAGGATGCTGCCATGGTTTCTCAGACCATTCGAAACATGCTTACTTCCCCAGGTAATTTTGCTGAATCGCAACACAGAGAAGTGACTTTTCCTGAGATTAGCACCACCATTCTCGAGAAGATTTGCCAATATTTTTACTGGAATCTTCAGTTCGCCAGTGGGAAAGAGACCGAGTTCCCGATTGAACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGA

Coding sequence (CDS)

AGCCAAATGAAGAAGGAAGAGACTGTGAAATTGATCAGCGCTGAGGGTTTCGAGTTCCTGATCCACAAGGATGCTGCCATGGTTTCTCAGACCATTCGAAACATGCTTACTTCCCCAGGTAATTTTGCTGAATCGCAACACAGAGAAGTGACTTTTCCTGAGATTAGCACCACCATTCTCGAGAAGATTTGCCAATATTTTTACTGGAATCTTCAGTTCGCCAGTGGGAAAGAGACCGAGTTCCCGATTGAACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGA

Protein sequence

SQMKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
Homology
[Close]
BLAST of Cp4.1LG20g08320 vs. Swiss-Prot
Match: ELOC_HUMAN (Transcription elongation factor B polypeptide 1 OS=Homo sapiens GN=TCEB1 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-18
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 1 

Query: 9   VKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFY 68
           VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF 
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 69  WNLQF--ASGKETEFPIEPELTLELMMAANYL 99
           + +++  +S +  EFPI PE+ LEL+MAAN+L
Sbjct: 79  YKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110

[Close]
BLAST of Cp4.1LG20g08320 vs. Swiss-Prot
Match: ELOC_MOUSE (Transcription elongation factor B polypeptide 1 OS=Mus musculus GN=Tceb1 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-18
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 1 

Query: 9   VKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFY 68
           VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF 
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 69  WNLQF--ASGKETEFPIEPELTLELMMAANYL 99
           + +++  +S +  EFPI PE+ LEL+MAAN+L
Sbjct: 79  YKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110

[Close]
BLAST of Cp4.1LG20g08320 vs. Swiss-Prot
Match: ELOC_RAT (Transcription elongation factor B polypeptide 1 OS=Rattus norvegicus GN=Tceb1 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-18
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 1 

Query: 9   VKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFY 68
           VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF 
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 69  WNLQF--ASGKETEFPIEPELTLELMMAANYL 99
           + +++  +S +  EFPI PE+ LEL+MAAN+L
Sbjct: 79  YKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110

[Close]
BLAST of Cp4.1LG20g08320 vs. Swiss-Prot
Match: ELOC_BOVIN (Transcription elongation factor B polypeptide 1 OS=Bos taurus GN=TCEB1 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-18
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 1 

Query: 9   VKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFY 68
           VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF 
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 69  WNLQF--ASGKETEFPIEPELTLELMMAANYL 99
           + +++  +S +  EFPI PE+ LEL+MAAN+L
Sbjct: 79  YKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110

[Close]
BLAST of Cp4.1LG20g08320 vs. Swiss-Prot
Match: ELOC_SCHPO (Elongin-C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=elc1 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-15
Identity = 41/95 (43.16%), Postives = 66/95 (69.47%), Query Frame = 1 

Query: 5  KEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKIC 64
          ++E V+LIS +GF F++ K+ A +S TIR +L   G F+E+Q  E TFP+I  T+LEK+C
Sbjct: 2  EKEYVRLISGDGFVFILEKEIACLSGTIRAILNE-GIFSEAQKNECTFPDIRATLLEKVC 61

Query: 65 QYFYWNLQFASGKE-TEFPIEPELTLELMMAANYL 99
          +Y ++N ++ +  +  +F I PE+ LEL++ A YL
Sbjct: 62 EYLHYNYRYKNQLDIPKFDIPPEMVLELLVTAEYL 95

[Close]
BLAST of Cp4.1LG20g08320 vs. TrEMBL
Match: A0A0A0LY44_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G525280 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.6e-47
Identity = 95/98 (96.94%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 3   MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 62
           MKKE+TVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1   MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 63  ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 101
           ICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61  ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]
BLAST of Cp4.1LG20g08320 vs. TrEMBL
Match: W9S530_9ROSA (Transcription elongation factor B polypeptide 1 OS=Morus notabilis GN=L484_025322 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 4.9e-44
Identity = 88/98 (89.80%), Postives = 96/98 (97.96%), Query Frame = 1 

Query: 3   MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 62
           M+KE+TVKLISAEGFEF++HKDAAMVSQTIRNMLTSPG+FAE+QH EVTFPEISTTILEK
Sbjct: 1   MRKEDTVKLISAEGFEFVVHKDAAMVSQTIRNMLTSPGSFAETQHGEVTFPEISTTILEK 60

Query: 63  ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 101
           IC+YFYWNL+FASGKETEF IEPELTLELMMAANYLHT
Sbjct: 61  ICKYFYWNLEFASGKETEFHIEPELTLELMMAANYLHT 98

[Close]
BLAST of Cp4.1LG20g08320 vs. TrEMBL
Match: B9HPC0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s04270g PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 6.3e-44
Identity = 87/98 (88.78%), Postives = 97/98 (98.98%), Query Frame = 1 

Query: 3   MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 62
           M+KE+TVKLISAEGFEF+IHK+AAMVSQTIRNMLTSPG+FAE++H EVTFPEISTTILEK
Sbjct: 1   MRKEDTVKLISAEGFEFVIHKEAAMVSQTIRNMLTSPGSFAETEHGEVTFPEISTTILEK 60

Query: 63  ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 101
           ICQYFYW+LQ+A+GKETEFPIEPELTLELMMAANYLHT
Sbjct: 61  ICQYFYWSLQYANGKETEFPIEPELTLELMMAANYLHT 98

[Close]
BLAST of Cp4.1LG20g08320 vs. TrEMBL
Match: V7BWG8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G146900g PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.4e-43
Identity = 88/99 (88.89%), Postives = 95/99 (95.96%), Query Frame = 1 

Query: 2   QMKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILE 61
           +MKKE+TVKLISAEGFEF++ K+AAMVSQTI NMLTSPG+FAE QH EVTFPEISTTILE
Sbjct: 47  KMKKEDTVKLISAEGFEFVVDKEAAMVSQTIHNMLTSPGSFAERQHGEVTFPEISTTILE 106

Query: 62  KICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 101
           KICQYFYW+LQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 107 KICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT 145

[Close]
BLAST of Cp4.1LG20g08320 vs. TrEMBL
Match: K7M3G3_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.4e-43
Identity = 88/99 (88.89%), Postives = 95/99 (95.96%), Query Frame = 1 

Query: 2   QMKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILE 61
           +MKKE+TVKLISAEGFEF++ K+AAMVSQTI NMLTSPG+FAE QH EVTFPEISTTILE
Sbjct: 64  KMKKEDTVKLISAEGFEFVVDKEAAMVSQTIHNMLTSPGSFAERQHGEVTFPEISTTILE 123

Query: 62  KICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 101
           KICQYFYW+LQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 124 KICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT 162

[Close]
BLAST of Cp4.1LG20g08320 vs. TAIR10
Match: AT5G59140.1 (AT5G59140.1 BTB/POZ domain-containing protein)

HSP 1 Score: 157.5 bits (397), Expect = 4.2e-39
Identity = 76/94 (80.85%), Postives = 86/94 (91.49%), Query Frame = 1 

Query: 7   ETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQY 66
           ETVKLIS EGFEF+I ++AAMVSQTIR+MLTSPG F+ES+   VTFP+ISTTILEKICQY
Sbjct: 3   ETVKLISMEGFEFVIDREAAMVSQTIRSMLTSPGGFSESKDGVVTFPDISTTILEKICQY 62

Query: 67  FYWNLQFASGKETEFPIEPELTLELMMAANYLHT 101
           FYW+LQ++ GKETEF IEPELTLELMMAANYLHT
Sbjct: 63  FYWSLQYSRGKETEFHIEPELTLELMMAANYLHT 96

[Close]
BLAST of Cp4.1LG20g08320 vs. NCBI nr
Match: gi|449455078|ref|XP_004145280.1| (PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 2.3e-47
Identity = 95/98 (96.94%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 3   MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 62
           MKKE+TVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1   MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 63  ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 101
           ICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61  ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]
BLAST of Cp4.1LG20g08320 vs. NCBI nr
Match: gi|1009114731|ref|XP_015873844.1| (PREDICTED: transcription elongation factor B polypeptide 1 [Ziziphus jujuba])

HSP 1 Score: 185.3 bits (469), Expect = 5.3e-44
Identity = 89/98 (90.82%), Postives = 96/98 (97.96%), Query Frame = 1 

Query: 3   MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 62
           M+KE+TVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPG+FAE++H EVTFPEISTTILEK
Sbjct: 1   MRKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGSFAETEHGEVTFPEISTTILEK 60

Query: 63  ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 101
           IC+YFYWNLQFASGKETEF IEPELTLELMMAANYLHT
Sbjct: 61  ICKYFYWNLQFASGKETEFHIEPELTLELMMAANYLHT 98

[Close]
BLAST of Cp4.1LG20g08320 vs. NCBI nr
Match: gi|703137802|ref|XP_010106562.1| (Transcription elongation factor B polypeptide 1 [Morus notabilis])

HSP 1 Score: 184.9 bits (468), Expect = 7.0e-44
Identity = 88/98 (89.80%), Postives = 96/98 (97.96%), Query Frame = 1 

Query: 3   MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 62
           M+KE+TVKLISAEGFEF++HKDAAMVSQTIRNMLTSPG+FAE+QH EVTFPEISTTILEK
Sbjct: 1   MRKEDTVKLISAEGFEFVVHKDAAMVSQTIRNMLTSPGSFAETQHGEVTFPEISTTILEK 60

Query: 63  ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 101
           IC+YFYWNL+FASGKETEF IEPELTLELMMAANYLHT
Sbjct: 61  ICKYFYWNLEFASGKETEFHIEPELTLELMMAANYLHT 98

[Close]
BLAST of Cp4.1LG20g08320 vs. NCBI nr
Match: gi|224106387|ref|XP_002314149.1| (hypothetical protein POPTR_0009s04270g [Populus trichocarpa])

HSP 1 Score: 184.5 bits (467), Expect = 9.1e-44
Identity = 87/98 (88.78%), Postives = 97/98 (98.98%), Query Frame = 1 

Query: 3   MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 62
           M+KE+TVKLISAEGFEF+IHK+AAMVSQTIRNMLTSPG+FAE++H EVTFPEISTTILEK
Sbjct: 1   MRKEDTVKLISAEGFEFVIHKEAAMVSQTIRNMLTSPGSFAETEHGEVTFPEISTTILEK 60

Query: 63  ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 101
           ICQYFYW+LQ+A+GKETEFPIEPELTLELMMAANYLHT
Sbjct: 61  ICQYFYWSLQYANGKETEFPIEPELTLELMMAANYLHT 98

[Close]
BLAST of Cp4.1LG20g08320 vs. NCBI nr
Match: gi|657987710|ref|XP_008386018.1| (PREDICTED: transcription elongation factor B polypeptide 1 [Malus domestica])

HSP 1 Score: 184.5 bits (467), Expect = 9.1e-44
Identity = 87/98 (88.78%), Postives = 96/98 (97.96%), Query Frame = 1 

Query: 3   MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 62
           MKKE+TVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPG+F+E++H EVTFPEISTTILEK
Sbjct: 1   MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGSFSETEHGEVTFPEISTTILEK 60

Query: 63  ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 101
           IC+YFYWNLQ+ASGK+TEFPIEPEL LELMMAANYLHT
Sbjct: 61  ICKYFYWNLQYASGKQTEFPIEPELVLELMMAANYLHT 98

The following BLAST results are available for this feature:
BLAST of Cp4.1LG20g08320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ELOC_HUMAN1.3e-1847.83Transcription elongation factor B polypeptide 1 OS=Homo sapiens GN=TCEB1 PE=1 SV... [more]
ELOC_MOUSE1.3e-1847.83Transcription elongation factor B polypeptide 1 OS=Mus musculus GN=Tceb1 PE=1 SV... [more]
ELOC_RAT1.3e-1847.83Transcription elongation factor B polypeptide 1 OS=Rattus norvegicus GN=Tceb1 PE... [more]
ELOC_BOVIN1.3e-1847.83Transcription elongation factor B polypeptide 1 OS=Bos taurus GN=TCEB1 PE=3 SV=1[more]
ELOC_SCHPO1.4e-1543.16Elongin-C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=elc1 PE=3 SV... [more]
BLAST of Cp4.1LG20g08320 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LY44_CUCSA1.6e-4796.94Uncharacterized protein OS=Cucumis sativus GN=Csa_1G525280 PE=3 SV=1[more]
W9S530_9ROSA4.9e-4489.80Transcription elongation factor B polypeptide 1 OS=Morus notabilis GN=L484_02532... [more]
B9HPC0_POPTR6.3e-4488.78Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s04270g PE=3 SV=1[more]
V7BWG8_PHAVU2.4e-4388.89Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G146900g PE=3 SV=1[more]
K7M3G3_SOYBN2.4e-4388.89Uncharacterized protein OS=Glycine max PE=3 SV=1[more]
BLAST of Cp4.1LG20g08320 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G59140.14.2e-3980.85 BTB/POZ domain-containing protein[more]
BLAST of Cp4.1LG20g08320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449455078|ref|XP_004145280.1|2.3e-4796.94PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis sativus][more]
gi|1009114731|ref|XP_015873844.1|5.3e-4490.82PREDICTED: transcription elongation factor B polypeptide 1 [Ziziphus jujuba][more]
gi|703137802|ref|XP_010106562.1|7.0e-4489.80Transcription elongation factor B polypeptide 1 [Morus notabilis][more]
gi|224106387|ref|XP_002314149.1|9.1e-4488.78hypothetical protein POPTR_0009s04270g [Populus trichocarpa][more]
gi|657987710|ref|XP_008386018.1|9.1e-4488.78PREDICTED: transcription elongation factor B polypeptide 1 [Malus domestica][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009062 fatty acid catabolic process
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0006366 transcription from RNA polymerase II promoter
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter
biological_process GO:0016567 protein ubiquitination
biological_process GO:0006414 translational elongation
cellular_component GO:0005829 cytosol
cellular_component GO:0005840 ribosome
cellular_component GO:0070449 elongin complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0004842 ubiquitin-protein transferase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g08320.1Cp4.1LG20g08320.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG20g08320Cucsa.146580Cucumber (Gy14) v1cgycpeB0389
Cp4.1LG20g08320CmaCh13G001030Cucurbita maxima (Rimu)cmacpeB235
Cp4.1LG20g08320CmaCh01G006280Cucurbita maxima (Rimu)cmacpeB483
Cp4.1LG20g08320CmoCh01G006580Cucurbita moschata (Rifu)cmocpeB441
Cp4.1LG20g08320CmoCh13G001020Cucurbita moschata (Rifu)cmocpeB202
Cp4.1LG20g08320Cla008209Watermelon (97103) v1cpewmB507
Cp4.1LG20g08320Csa1G525280Cucumber (Chinese Long) v2cpecuB507
Cp4.1LG20g08320MELO3C020599Melon (DHL92) v3.5.1cpemeB479
Cp4.1LG20g08320ClCG03G001200Watermelon (Charleston Gray)cpewcgB467
Cp4.1LG20g08320CSPI01G23410Wild cucumber (PI 183967)cpecpiB507
Cp4.1LG20g08320Lsi02G013290Bottle gourd (USVL1VR-Ls)cpelsiB422
Cp4.1LG20g08320MELO3C020599.2Melon (DHL92) v3.6.1cpemedB561
Cp4.1LG20g08320CsaV3_1G035700Cucumber (Chinese Long) v3cpecucB0625
Cp4.1LG20g08320Bhi08G000478Wax gourdcpewgoB0650
Cp4.1LG20g08320CsGy1G022890Cucumber (Gy14) v2cgybcpeB071
Cp4.1LG20g08320Carg12395Silver-seed gourdcarcpeB0620
Cp4.1LG20g08320Carg20635Silver-seed gourdcarcpeB0531
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG20g08320Cp4.1LG00g03630Cucurbita pepo (Zucchini)cpecpeB008
Cp4.1LG20g08320Cp4.1LG02g13590Cucurbita pepo (Zucchini)cpecpeB432
Cp4.1LG20g08320Cp4.1LG02g11630Cucurbita pepo (Zucchini)cpecpeB435
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG20g08320Silver-seed gourdcarcpeB0228
Cp4.1LG20g08320Cucumber (Chinese Long) v3cpecucB0653
Cp4.1LG20g08320Wax gourdcpewgoB0628
Cp4.1LG20g08320Cucurbita pepo (Zucchini)cpecpeB444
Cp4.1LG20g08320Cucurbita pepo (Zucchini)cpecpeB447
Cp4.1LG20g08320Cucumber (Gy14) v1cgycpeB0376
Cp4.1LG20g08320Cucurbita maxima (Rimu)cmacpeB636
Cp4.1LG20g08320Cucurbita moschata (Rifu)cmocpeB586
Cp4.1LG20g08320Bottle gourd (USVL1VR-Ls)cpelsiB412
Cp4.1LG20g08320Watermelon (Charleston Gray)cpewcgB462
Cp4.1LG20g08320Watermelon (97103) v1cpewmB526
Cp4.1LG20g08320Melon (DHL92) v3.5.1cpemeB468
Cp4.1LG20g08320Cucumber (Gy14) v2cgybcpeB818
Cp4.1LG20g08320Melon (DHL92) v3.6.1cpemedB551