Cucsa.144050 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.144050
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Potassium transporter
Location	scaffold01080 : 456352 .. 457387 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATCGTCCAGGCCGCCGTCGATCCTATAAATTTCAGGTTCAATTGAACGAACTAACCGGCGGCAACAATGGTGGCTATTTGTCCGTCTCACGGGGGGTTCCCGTCGCAATTAGGGCAGGGATGGAAGTCGGTAAGGGGGAGGCCTGATAGGAGGAGCTCCAATTTGAGAGTAAGGGCGGAGAAGGGCGAGGAGAGAGAAAGCGGGGGAGGAGAGAATAAGAAATCGCTGTTCAGCAGCGTGACTGAGGCGTTGGATTTCTCAGCAGTCCGATCGACTCGCGACGCCGAGCTCCTCGACGATGCCCGCCAGGCCACCAAAGCCGGCGGCAGAATGAGCCGTGAACAGGTAGGTGCTTGCTTGCTTTTGTCACAATGAATCTATTATTAATTATGGGTAATATTTGGCGCTTAACATCTCTATGATTTCTGTTAGTGTTTTGCATAACTCGATTGGTATCCAATCAAAATGTGTCACATAGCTAAGACACTTTTTCTTAATCATCTAAATATGTACTTCTACATTATGCATGGTATAGTATGGAGCTTTAAGAAGGAAAATAGGAGGGACCTACAAGGACTTCTTCAAATCTTACATAGAAGGTATGTTCCAACCATTAACCATTCCTTATACCTTATGAATTAACTCTTAAATTTGTTTAACCCTCACACAATATTTGTTTAAACAAAATCTAAAGTAGGGTATACATTCATATATTTGTGAAACCTTAAAAGTTAGGGTTATAGAATTGATTTCCCCCCcTTTCACTTCATTTTATTTATATTAAAGCCTTAAAATTTATGTTAACTCATGATCAAAATTAATGTAAAATATTGGGTTGTTTGAATGGATAAAAAaTAGTGGATGGACAATATGTTGAAGAAGGGTGGGTGGACAAGACATGCAAGGTGTGCAAGAAGGACACGAGGGGAGAAGCAAGGCAAGTTGACAAACTTGGAAGATATGTTCATGTTGCTTGTTTGGAGAAGTCCAACTCTTCCCCGGGGAATTTCTTTTCCAAGTTCTTCTCCAAATGA

mRNA sequence

TAATCGTCCAGGCCGCCGTCGATCCTATAAATTTCAGGTTCAATTGAACGAACTAACCGGCGGCAACAATGGTGGCTATTTGTCCGTCTCACGGGGGGTTCCCGTCGCAATTAGGGCAGGGATGGAAGTCGGTAAGGGGGAGGCCTGATAGGAGGAGCTCCAATTTGAGAGTAAGGGCGGAGAAGGGCGAGGAGAGAGAAAGCGGGGGAGGAGAGAATAAGAAATCGCTGTTCAGCAGCGTGACTGAGGCGTTGGATTTCTCAGCAGTCCGATCGACTCGCGACGCCGAGCTCCTCGACGATGCCCGCCAGGCCACCAAAGCCGGCGGCAGAATGAGCCGTGAACAGTATGGAGCTTTAAGAAGGAAAATAGGAGGGACCTACAAGGACTTCTTCAAATCTTACATAGAAGTGGATGGACAATATGTTGAAGAAGGGTGGGTGGACAAGACATGCAAGGTGTGCAAGAAGGACACGAGGGGAGAAGCAAGGCAAGTTGACAAACTTGGAAGATATGTTCATGTTGCTTGTTTGGAGAAGTCCAACTCTTCCCCGGGGAATTTCTTTTCCAAGTTCTTCTCCAAATGA

Coding sequence (CDS)

ATGGTGGCTATTTGTCCGTCTCACGGGGGGTTCCCGTCGCAATTAGGGCAGGGATGGAAGTCGGTAAGGGGGAGGCCTGATAGGAGGAGCTCCAATTTGAGAGTAAGGGCGGAGAAGGGCGAGGAGAGAGAAAGCGGGGGAGGAGAGAATAAGAAATCGCTGTTCAGCAGCGTGACTGAGGCGTTGGATTTCTCAGCAGTCCGATCGACTCGCGACGCCGAGCTCCTCGACGATGCCCGCCAGGCCACCAAAGCCGGCGGCAGAATGAGCCGTGAACAGTATGGAGCTTTAAGAAGGAAAATAGGAGGGACCTACAAGGACTTCTTCAAATCTTACATAGAAGTGGATGGACAATATGTTGAAGAAGGGTGGGTGGACAAGACATGCAAGGTGTGCAAGAAGGACACGAGGGGAGAAGCAAGGCAAGTTGACAAACTTGGAAGATATGTTCATGTTGCTTGTTTGGAGAAGTCCAACTCTTCCCCGGGGAATTTCTTTTCCAAGTTCTTCTCCAAATGA

Protein sequence

MVAICPSHGGFPSQLGQGWKSVRGRPDRRSSNLRVRAEKGEERESGGGENKKSLFSSVTEALDFSAVRSTRDAELLDDARQATKAGGRMSREQYGALRRKIGGTYKDFFKSYIEVDGQYVEEGWVDKTCKVCKKDTRGEARQVDKLGRYVHVACLEKSNSSPGNFFSKFFSK*

Homology

[Close]

BLAST of Cucsa.144050 vs. TrEMBL
Match: A0A0A0KM41_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G220390 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 5.2e-94
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 1


Query: 1   MVAICPSHGGFPSQLGQGWKSVRGRPDRRSSNLRVRAEKGEERESGGGENKKSLFSSVTE 60
           MVAICPSHGGFPSQLGQGWKSVRGRPDRRSSNLRVRAEKGEERESGGGENKKSLFSSVTE
Sbjct: 1   MVAICPSHGGFPSQLGQGWKSVRGRPDRRSSNLRVRAEKGEERESGGGENKKSLFSSVTE 60

Query: 61  ALDFSAVRSTRDAELLDDARQATKAGGRMSREQYGALRRKIGGTYKDFFKSYIEVDGQYV 120
           ALDFSAVRSTRDAELLDDARQATKAGGRMSREQYGALRRKIGGTYKDFFKSYIEVDGQYV
Sbjct: 61  ALDFSAVRSTRDAELLDDARQATKAGGRMSREQYGALRRKIGGTYKDFFKSYIEVDGQYV 120

Query: 121 EEGWVDKTCKVCKKDTRGEARQVDKLGRYVHVACLEKSNSSPGNFFSKFFSK 173
           EEGWVDKTCKVCKKDTRGEARQVDKLGRYVHVACLEKSNSSPGNFFSKFFSK
Sbjct: 121 EEGWVDKTCKVCKKDTRGEARQVDKLGRYVHVACLEKSNSSPGNFFSKFFSK 172

[Close]

BLAST of Cucsa.144050 vs. TrEMBL
Match: B9S4D0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0689480 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.0e-57
Identity = 118/168 (70.24%), Postives = 138/168 (82.14%), Query Frame = 1


Query: 6   PSHGGFPSQLGQGWKSVRGRPDRRSSNLRVRAE-KGEERESGGGENKKSLFSSVTEALDF 65
           PS   FP Q G G K++     +RS N RV A+ +  + E+   E+K+S FSSVTEALDF
Sbjct: 10  PSQTYFPRQAGVGQKNLSESRLQRSPNFRVFAKSENAKEETKKSESKQSFFSSVTEALDF 69

Query: 66  SAVRSTRDAELLDDARQATKAGGRMSREQYGALRRKIGGTYKDFFKSYIEVDGQYVEEGW 125
           S VRS +DAELL++AR+ TK+GGRM+REQYGALRRKIGGTYKDFFKSYI+VDG YVEEGW
Sbjct: 70  SQVRSVKDAELLEEARENTKSGGRMTREQYGALRRKIGGTYKDFFKSYIDVDGAYVEEGW 129

Query: 126 VDKTCKVCKKDTRGEARQVDKLGRYVHVACLEKSNSSPGNFFSKFFSK 173
           VDKTCKVCKKDTRGEARQVDKLGRYVHVACLEK+NS  GNFF++ FS+
Sbjct: 130 VDKTCKVCKKDTRGEARQVDKLGRYVHVACLEKANS--GNFFTRLFSR 175

[Close]

BLAST of Cucsa.144050 vs. TrEMBL
Match: A0A0B0PRW3_GOSAR (Potassium transporter OS=Gossypium arboreum GN=F383_11745 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 5.6e-56
Identity = 109/135 (80.74%), Postives = 123/135 (91.11%), Query Frame = 1


Query: 38  EKGEERESGGGENKKSLFSSVTEALDFSAVRSTRDAELLDDARQATKAGGRMSREQYGAL 97
           E  +E+E G  ++K+SLFSSVTEALDFS VRS +DAELLD+AR+ATK+GGRMSREQYGAL
Sbjct: 834 ETNDEKEEGKKKSKQSLFSSVTEALDFSQVRSVQDAELLDEAREATKSGGRMSREQYGAL 893

Query: 98  RRKIGGTYKDFFKSYIEVDGQYVEEGWVDKTCKVCKKDTRGEARQVDKLGRYVHVACLEK 157
           RRKIGGTYKDFFKSY+EV+G+YVEEGWVDKTCKVCKKDTRGEARQVD  GRYVHVACLEK
Sbjct: 894 RRKIGGTYKDFFKSYVEVNGEYVEEGWVDKTCKVCKKDTRGEARQVDNFGRYVHVACLEK 953

Query: 158 SNSSPGNFFSKFFSK 173
           SNS  GNFF+K FS+
Sbjct: 954 SNS--GNFFTKLFSR 966

[Close]

BLAST of Cucsa.144050 vs. TrEMBL
Match: A0A0D2VU79_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G014100 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.6e-55
Identity = 108/135 (80.00%), Postives = 122/135 (90.37%), Query Frame = 1


Query: 38  EKGEERESGGGENKKSLFSSVTEALDFSAVRSTRDAELLDDARQATKAGGRMSREQYGAL 97
           E  +E+E G  ++K+SLFSSVTEALDFS VRS +DAELLD+AR+ATK+GGRMSREQYGAL
Sbjct: 42  ETNDEKEEGKKKSKQSLFSSVTEALDFSQVRSVKDAELLDEAREATKSGGRMSREQYGAL 101

Query: 98  RRKIGGTYKDFFKSYIEVDGQYVEEGWVDKTCKVCKKDTRGEARQVDKLGRYVHVACLEK 157
           RRKIGGTYKDFFKSY+EV+G+YVEEGWVDK CKVCKKDTRGEARQVD  GRYVHVACLEK
Sbjct: 102 RRKIGGTYKDFFKSYVEVNGEYVEEGWVDKACKVCKKDTRGEARQVDNFGRYVHVACLEK 161

Query: 158 SNSSPGNFFSKFFSK 173
           SNS  GNFF+K FS+
Sbjct: 162 SNS--GNFFTKLFSR 174

[Close]

BLAST of Cucsa.144050 vs. TrEMBL
Match: C6T241_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G221700 PE=2 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 4.7e-55
Identity = 112/169 (66.27%), Postives = 134/169 (79.29%), Query Frame = 1


Query: 4   ICPSHGGFPSQLGQGWKSVRGRPDRRSSNLRVRAEKGEERESGGGENKKSLFSSVTEALD 63
           + PS+ GF S  G    +   R   RS   RV A++ ++ E    + K+SLFSSVTEALD
Sbjct: 8   LTPSYSGFSSNSGLIHDTTNHRRVNRSMKFRVSAKQEKQEE----KKKQSLFSSVTEALD 67

Query: 64  FSAVRSTRDAELLDDARQATKAGGRMSREQYGALRRKIGGTYKDFFKSYIEVDGQYVEEG 123
           FS VRS  DA+L+++AR+ATK+G RMSREQYGALRRKIGGTYKDFFKSY+EVDG YVEEG
Sbjct: 68  FSQVRSAEDAQLIEEAREATKSGERMSREQYGALRRKIGGTYKDFFKSYVEVDGAYVEEG 127

Query: 124 WVDKTCKVCKKDTRGEARQVDKLGRYVHVACLEKSNSSPGNFFSKFFSK 173
           WVDKTCKVCKKDT+GEARQVDK GRYVHVACLEK+N+  GNFF++ FS+
Sbjct: 128 WVDKTCKVCKKDTKGEARQVDKFGRYVHVACLEKANT--GNFFTRLFSR 170

[Close]

BLAST of Cucsa.144050 vs. TAIR10
Match: AT3G56290.1 (AT3G56290.1 unknown protein)

HSP 1 Score: 198.0 bits (502), Expect = 4.9e-51
Identity = 93/138 (67.39%), Postives = 117/138 (84.78%), Query Frame = 1


Query: 35  VRAEKGEERESGGGENKKSLFSSVTEALDFSAVRSTRDAELLDDARQATKAGGRMSREQY 94
           V A++ ++ +    E + SLF+ +T+ALDFS VRS +DAELL +AR+ATK+G +M++EQY
Sbjct: 38  VSAKQEKDEDKKKNEEETSLFTQLTDALDFSQVRSEKDAELLYEAREATKSGRKMTQEQY 97

Query: 95  GALRRKIGGTYKDFFKSYIEVDGQYVEEGWVDKTCKVCKKDTRGEARQVDKLGRYVHVAC 154
           GALRRKIGGTYKDFFKSY+EVDGQYVEEGWVDKTCK+CKKDT+GEARQVDKLGRY HV+C
Sbjct: 98  GALRRKIGGTYKDFFKSYVEVDGQYVEEGWVDKTCKICKKDTKGEARQVDKLGRYAHVSC 157

Query: 155 LEKSNSSPGNFFSKFFSK 173
           L+  N   GNFF++ FS+
Sbjct: 158 LQ--NPPSGNFFTRLFSR 173

[Close]

BLAST of Cucsa.144050 vs. NCBI nr
Match: gi|449457415|ref|XP_004146444.1| (PREDICTED: uncharacterized protein LOC101211273 [Cucumis sativus])

HSP 1 Score: 351.7 bits (901), Expect = 7.4e-94
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 1


Query: 1   MVAICPSHGGFPSQLGQGWKSVRGRPDRRSSNLRVRAEKGEERESGGGENKKSLFSSVTE 60
           MVAICPSHGGFPSQLGQGWKSVRGRPDRRSSNLRVRAEKGEERESGGGENKKSLFSSVTE
Sbjct: 1   MVAICPSHGGFPSQLGQGWKSVRGRPDRRSSNLRVRAEKGEERESGGGENKKSLFSSVTE 60

Query: 61  ALDFSAVRSTRDAELLDDARQATKAGGRMSREQYGALRRKIGGTYKDFFKSYIEVDGQYV 120
           ALDFSAVRSTRDAELLDDARQATKAGGRMSREQYGALRRKIGGTYKDFFKSYIEVDGQYV
Sbjct: 61  ALDFSAVRSTRDAELLDDARQATKAGGRMSREQYGALRRKIGGTYKDFFKSYIEVDGQYV 120

Query: 121 EEGWVDKTCKVCKKDTRGEARQVDKLGRYVHVACLEKSNSSPGNFFSKFFSK 173
           EEGWVDKTCKVCKKDTRGEARQVDKLGRYVHVACLEKSNSSPGNFFSKFFSK
Sbjct: 121 EEGWVDKTCKVCKKDTRGEARQVDKLGRYVHVACLEKSNSSPGNFFSKFFSK 172

[Close]

BLAST of Cucsa.144050 vs. NCBI nr
Match: gi|659114150|ref|XP_008456929.1| (PREDICTED: uncharacterized protein LOC103496731 [Cucumis melo])

HSP 1 Score: 334.0 bits (855), Expect = 1.6e-88
Identity = 165/172 (95.93%), Postives = 167/172 (97.09%), Query Frame = 1


Query: 1   MVAICPSHGGFPSQLGQGWKSVRGRPDRRSSNLRVRAEKGEERESGGGENKKSLFSSVTE 60
           MVAI PSHGGFPSQLGQGWKSVRGRPDRRSSNLRV AEKGEERES GGENKKSLFSSVTE
Sbjct: 1   MVAISPSHGGFPSQLGQGWKSVRGRPDRRSSNLRVMAEKGEERESVGGENKKSLFSSVTE 60

Query: 61  ALDFSAVRSTRDAELLDDARQATKAGGRMSREQYGALRRKIGGTYKDFFKSYIEVDGQYV 120
           ALDFSAVRS+RDAELLDDARQATKAGGRM+REQYGALRRKIGGTYKDFFKSYIEVDGQYV
Sbjct: 61  ALDFSAVRSSRDAELLDDARQATKAGGRMTREQYGALRRKIGGTYKDFFKSYIEVDGQYV 120

Query: 121 EEGWVDKTCKVCKKDTRGEARQVDKLGRYVHVACLEKSNSSPGNFFSKFFSK 173
           EEGWVDKTCKVCKKDTRGEARQVDKLGRYVHVACLEKSNSS GNFFSK FSK
Sbjct: 121 EEGWVDKTCKVCKKDTRGEARQVDKLGRYVHVACLEKSNSSSGNFFSKLFSK 172

[Close]

BLAST of Cucsa.144050 vs. NCBI nr
Match: gi|255559659|ref|XP_002520849.1| (PREDICTED: uncharacterized protein LOC8259533 [Ricinus communis])

HSP 1 Score: 231.1 bits (588), Expect = 1.5e-57
Identity = 118/168 (70.24%), Postives = 138/168 (82.14%), Query Frame = 1


Query: 6   PSHGGFPSQLGQGWKSVRGRPDRRSSNLRVRAE-KGEERESGGGENKKSLFSSVTEALDF 65
           PS   FP Q G G K++     +RS N RV A+ +  + E+   E+K+S FSSVTEALDF
Sbjct: 10  PSQTYFPRQAGVGQKNLSESRLQRSPNFRVFAKSENAKEETKKSESKQSFFSSVTEALDF 69

Query: 66  SAVRSTRDAELLDDARQATKAGGRMSREQYGALRRKIGGTYKDFFKSYIEVDGQYVEEGW 125
           S VRS +DAELL++AR+ TK+GGRM+REQYGALRRKIGGTYKDFFKSYI+VDG YVEEGW
Sbjct: 70  SQVRSVKDAELLEEARENTKSGGRMTREQYGALRRKIGGTYKDFFKSYIDVDGAYVEEGW 129

Query: 126 VDKTCKVCKKDTRGEARQVDKLGRYVHVACLEKSNSSPGNFFSKFFSK 173
           VDKTCKVCKKDTRGEARQVDKLGRYVHVACLEK+NS  GNFF++ FS+
Sbjct: 130 VDKTCKVCKKDTRGEARQVDKLGRYVHVACLEKANS--GNFFTRLFSR 175

[Close]

BLAST of Cucsa.144050 vs. NCBI nr
Match: gi|728848144|gb|KHG27587.1| (Potassium transporter 2 [Gossypium arboreum])

HSP 1 Score: 225.3 bits (573), Expect = 8.1e-56
Identity = 109/135 (80.74%), Postives = 123/135 (91.11%), Query Frame = 1


Query: 38  EKGEERESGGGENKKSLFSSVTEALDFSAVRSTRDAELLDDARQATKAGGRMSREQYGAL 97
           E  +E+E G  ++K+SLFSSVTEALDFS VRS +DAELLD+AR+ATK+GGRMSREQYGAL
Sbjct: 834 ETNDEKEEGKKKSKQSLFSSVTEALDFSQVRSVQDAELLDEAREATKSGGRMSREQYGAL 893

Query: 98  RRKIGGTYKDFFKSYIEVDGQYVEEGWVDKTCKVCKKDTRGEARQVDKLGRYVHVACLEK 157
           RRKIGGTYKDFFKSY+EV+G+YVEEGWVDKTCKVCKKDTRGEARQVD  GRYVHVACLEK
Sbjct: 894 RRKIGGTYKDFFKSYVEVNGEYVEEGWVDKTCKVCKKDTRGEARQVDNFGRYVHVACLEK 953

Query: 158 SNSSPGNFFSKFFSK 173
           SNS  GNFF+K FS+
Sbjct: 954 SNS--GNFFTKLFSR 966

[Close]

BLAST of Cucsa.144050 vs. NCBI nr
Match: gi|823252789|ref|XP_012459009.1| (PREDICTED: uncharacterized protein LOC105779678 [Gossypium raimondii])

HSP 1 Score: 223.8 bits (569), Expect = 2.3e-55
Identity = 108/135 (80.00%), Postives = 122/135 (90.37%), Query Frame = 1


Query: 38  EKGEERESGGGENKKSLFSSVTEALDFSAVRSTRDAELLDDARQATKAGGRMSREQYGAL 97
           E  +E+E G  ++K+SLFSSVTEALDFS VRS +DAELLD+AR+ATK+GGRMSREQYGAL
Sbjct: 42  ETNDEKEEGKKKSKQSLFSSVTEALDFSQVRSVKDAELLDEAREATKSGGRMSREQYGAL 101

Query: 98  RRKIGGTYKDFFKSYIEVDGQYVEEGWVDKTCKVCKKDTRGEARQVDKLGRYVHVACLEK 157
           RRKIGGTYKDFFKSY+EV+G+YVEEGWVDK CKVCKKDTRGEARQVD  GRYVHVACLEK
Sbjct: 102 RRKIGGTYKDFFKSYVEVNGEYVEEGWVDKACKVCKKDTRGEARQVDNFGRYVHVACLEK 161

Query: 158 SNSSPGNFFSKFFSK 173
           SNS  GNFF+K FS+
Sbjct: 162 SNS--GNFFTKLFSR 174

The following BLAST results are available for this feature:

BLAST of Cucsa.144050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KM41_CUCSA	5.2e-94	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G220390 PE=4 SV=1	[more]
B9S4D0_RICCO	1.0e-57	70.24	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0689480 PE=4 SV=1	[more]
A0A0B0PRW3_GOSAR	5.6e-56	80.74	Potassium transporter OS=Gossypium arboreum GN=F383_11745 PE=3 SV=1	[more]
A0A0D2VU79_GOSRA	1.6e-55	80.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G014100 PE=4 SV=1	[more]
C6T241_SOYBN	4.7e-55	66.27	Uncharacterized protein OS=Glycine max GN=GLYMA_04G221700 PE=2 SV=1	[more]

BLAST of Cucsa.144050 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G56290.1	4.9e-51	67.39	unknown protein	[more]

BLAST of Cucsa.144050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457415\|ref\|XP_004146444.1\|	7.4e-94	100.00	PREDICTED: uncharacterized protein LOC101211273 [Cucumis sativus]	[more]
gi\|659114150\|ref\|XP_008456929.1\|	1.6e-88	95.93	PREDICTED: uncharacterized protein LOC103496731 [Cucumis melo]	[more]
gi\|255559659\|ref\|XP_002520849.1\|	1.5e-57	70.24	PREDICTED: uncharacterized protein LOC8259533 [Ricinus communis]	[more]
gi\|728848144\|gb\|KHG27587.1\|	8.1e-56	80.74	Potassium transporter 2 [Gossypium arboreum]	[more]
gi\|823252789\|ref\|XP_012459009.1\|	2.3e-55	80.00	PREDICTED: uncharacterized protein LOC105779678 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008013	GATA_N

Vocabulary: **Biological Process**
Term	Definition
GO:0045893	positive regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0008270	zinc ion binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0010264	myo-inositol hexakisphosphate biosynthetic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0071805	potassium ion transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0015079	potassium ion transmembrane transporter activity
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.144050.1	Cucsa.144050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008013	GATA-type transcription activator, N-terminal	PFAM	PF05349	GATA-N	coord: 57..115 score: 2.
None	No IPR available	PANTHER	PTHR36771	FAMILY NOT NAMED	coord: 1..172 score: 6.1
None	No IPR available	PANTHER	PTHR36771:SF1	SUBFAMILY NOT NAMED	coord: 1..172 score: 6.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.144050	Cla007279	Watermelon (97103) v1	cgywmB253
Cucsa.144050	Csa5G220390	Cucumber (Chinese Long) v2	cgycuB209
Cucsa.144050	MELO3C020131	Melon (DHL92) v3.5.1	cgymeB241
Cucsa.144050	ClCG07G004950	Watermelon (Charleston Gray)	cgywcgB244
Cucsa.144050	CSPI05G11430	Wild cucumber (PI 183967)	cgycpiB212
Cucsa.144050	CmaCh04G001110	Cucurbita maxima (Rimu)	cgycmaB0401
Cucsa.144050	CmoCh04G001080	Cucurbita moschata (Rifu)	cgycmoB0401
Cucsa.144050	MELO3C020131.2	Melon (DHL92) v3.6.1	cgymedB238
Cucsa.144050	CsaV3_5G010830	Cucumber (Chinese Long) v3	cgycucB217
Cucsa.144050	Cla97C07G133330	Watermelon (97103) v2	cgywmbB244
Cucsa.144050	Bhi07G000428	Wax gourd	cgywgoB283
Cucsa.144050	Carg24481	Silver-seed gourd	carcgyB1028

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.144050	Cucurbita pepo (Zucchini)	cgycpeB0387
Cucsa.144050	Cucurbita pepo (Zucchini)	cgycpeB0388
Cucsa.144050	Bottle gourd (USVL1VR-Ls)	cgylsiB231
Cucsa.144050	Bottle gourd (USVL1VR-Ls)	cgylsiB232
Cucsa.144050	Silver-seed gourd	carcgyB0745
Cucsa.144050	Cucumber (Chinese Long) v3	cgycucB218
Cucsa.144050	Watermelon (97103) v2	cgywmbB243
Cucsa.144050	Cucurbita maxima (Rimu)	cgycmaB0400
Cucsa.144050	Cucurbita moschata (Rifu)	cgycmoB0400
Cucsa.144050	Wild cucumber (PI 183967)	cgycpiB213
Cucsa.144050	Watermelon (Charleston Gray)	cgywcgB243