Cucsa.133470 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.133470
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	40S ribosomal protein S24
Location	scaffold01037 : 1160272 .. 1162001 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCCCAATATCAGGACTCTCCTGCCGCTCTTCTCTTCGCCGTCGCCTCCTTCGAGCTTCAAGCCTCCCATCCTCTTCAGCCATGGCGGACAAAGCAGTCACCATTCGGACCAGGAAGTTCATGACCAACAGGCTTCTCTCCAGGAAGCAATTCGTGAGTCCTTTGTCTTTGCTTTCCGCATTACTTTATGTTTATTGATTCTGCGAGGTTTGATTTTTCTCTTGGCGTCTCTTTTTTtCTTTTTtCCATGTAAGTTCCTTGTTCGGTTTTGATTTTGGACTTAGTTTCTGGATTAGGGTGTAGTGCTAGTTGCATTTTATTTGGTGCTGAAAATGGTTCGGTTTTGTATTTCATTTTGAGTTTAGGGTTTTAGTGTTGCTTATCTAATTGAAATGAAAATCACTTTCGGGTTAGCGGTATATGGTCCTTGATTGGCTATTTGTTTATAATCTTTCTGTTTCGTGATTTATGCAGGTCATTGATGTTCTTCACCCCGGCAGACCCAACGTCTCAAAGGTAATCTATTTTTCGTGTTATTTTTTtCCCCATGAAGTTATCGAGTGTTTATTGCATTTACAAAATCTGTATGAATAATTAACTTTTCAATCTATAGTATTTTTTCTCACTGGATCCTTAGTGTTTCGTGTTGTATTTTAATCCCATTTTCATTGAAATTGGAAAATCTATCTTTTCTGGCACTTGTATGGAATAAAAGGGCATTCATTTGGCACCCATGTTGCTGATATTTTGCTATGCTTTGGCTTATGGTGATCATTATGTTGTATGTTTCTATTTCTTGGTCTTAAGGCTGAGCTGAAAGAGAAGCTGGGCAGAATCTATGATGTGAAGGATCCAAATGCCATCTTTGTTTTCAAATTCAGAACTCACTTCGGTGGTGGAAAATCCACTGGGTTCGGTTTGATCTATGATTCCGTCGAGAATGCAAAGAAGTACGAGCCAAAATACAGGCTAATCAGGGTAATGTTACAATGTCCTTTTAAGCAAAACTTCAATTATTGTGCTCTTAAGATTTGTTTCATAGAATGACATTACTCAAGCATGCTTCTTATACTTCATTATCATAGAATGGCCTCGACACCAAGGTAGAAAAATCAAGAAAGCAAATGAAGGAAAGGAAGAACAGGGCAAAGAAAATCCGAGGTGTTAAGAAGGTAAGTGAACAAATTCTTATAGCTAATCGATGAATGATTCTGAAATGATAGTTGCCTTTGATTTACATTTTTATATCTTCCTACAGACCAAGGCTTCAGACGCAGCAAAAGGAGGAAAGAAGAAATAAATTTGCTGGAATTTTGTGCTTATGGTGGGCAAAGATAATCTGCAGAATTGTGTTTTTtCGTTTAGTAGAGTCCCTTTTAGCTATCTTCTTACTCTTCAATTAAATTATGTTAATCAGTGATTTGGTTGTTGGTGATTAGTGATATGAAAACTTTAGTTCTTTTGCAAGAGGACAGAATTTTTGACATTACATTTCCTTGTTTCTCTTTTtAATGTTTTGGTTGACACTTTAACCCATTGAGGCTATCATTGGTAGATTATGAAAATTGATTGATGGGATAATTCCAAAGCTTTATCAAATCTTCTACTTTGAGTTGTTTGAATCATAGAACTATAGTGTATTAACATTAGACTTCTTTTTTAATTATAGATTGTTCAAAGTAAGAAATGCAATATTAATGTTTGGGATAATAATAATAATGGAAATATT

mRNA sequence

CATCCCAATATCAGGACTCTCCTGCCGCTCTTCTCTTCGCCGTCGCCTCCTTCGAGCTTCAAGCCTCCCATCCTCTTCAGCCATGGCGGACAAAGCAGTCACCATTCGGACCAGGAAGTTCATGACCAACAGGCTTCTCTCCAGGAAGCAATTCGTCATTGATGTTCTTCACCCCGGCAGACCCAACGTCTCAAAGGCTGAGCTGAAAGAGAAGCTGGGCAGAATCTATGATGTGAAGGATCCAAATGCCATCTTTGTTTTCAAATTCAGAACTCACTTCGGTGGTGGAAAATCCACTGGGTTCGGTTTGATCTATGATTCCGTCGAGAATGCAAAGAAGTACGAGCCAAAATACAGGCTAATCAGGAATGGCCTCGACACCAAGGTAGAAAAATCAAGAAAGCAAATGAAGGAAAGGAAGAACAGGGCAAAGAAAATCCGAGGTGTTAAGAAGACCAAGGCTTCAGACGCAGCAAAAGGAGGAAAGAAGAAATAAATTTGCTGGAATTTTGTGCTTATGGTGGGCAAAGATAATCTGCAGAATTGTGTTTTTTCGTTTAGTAGAGTCCCTTTTAGCTATCTTCTTACTCTTCAATTAAATTATGTTAATCAGTGATTTGGTTGTTGGTGATTAGTGATATGAAAACTTTAGTTCTTTTGCAAGAGGACAGAATTTTTGACATTACATTTCCTTGTTTCTCTTTTTAATGTTTTGGTTGACACTTTAACCCATTGAGGCTATCATTGGTAGATTATGAAAATTGATTGATGGGATAATTCCAAAGCTTTATCAAATCTTCTACTTTGAGTTGTTTGAATCATAGAACTATAGTGTATTAACATTAGACTTCTTTTTTAATTATAGATTGTTCAAAGTAAGAAATGCAATATTAATGTTTGGGATAATAATAATAATGGAAATATT

Coding sequence (CDS)

ATGGCGGACAAAGCAGTCACCATTCGGACCAGGAAGTTCATGACCAACAGGCTTCTCTCCAGGAAGCAATTCGTCATTGATGTTCTTCACCCCGGCAGACCCAACGTCTCAAAGGCTGAGCTGAAAGAGAAGCTGGGCAGAATCTATGATGTGAAGGATCCAAATGCCATCTTTGTTTTCAAATTCAGAACTCACTTCGGTGGTGGAAAATCCACTGGGTTCGGTTTGATCTATGATTCCGTCGAGAATGCAAAGAAGTACGAGCCAAAATACAGGCTAATCAGGAATGGCCTCGACACCAAGGTAGAAAAATCAAGAAAGCAAATGAAGGAAAGGAAGAACAGGGCAAAGAAAATCCGAGGTGTTAAGAAGACCAAGGCTTCAGACGCAGCAAAAGGAGGAAAGAAGAAATAA

Protein sequence

MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK*

Homology

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BLAST of Cucsa.133470 vs. Swiss-Prot
Match: RS241_ARATH (40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 3.2e-63
Identity = 119/132 (90.15%), Postives = 128/132 (96.97%), Query Frame = 1


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELKEKL R+Y+VKDPNAIFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA DA K
Sbjct: 121 GVKKTKAGDAKK 132

[Close]

BLAST of Cucsa.133470 vs. Swiss-Prot
Match: RS242_ARATH (40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2)

HSP 1 Score: 236.5 bits (602), Expect = 1.7e-61
Identity = 115/132 (87.12%), Postives = 125/132 (94.70%), Query Frame = 1


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSKAELKEKL R+Y+VKDPNAIF F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA D  K
Sbjct: 121 GVKKTKAGDTKK 132

[Close]

BLAST of Cucsa.133470 vs. Swiss-Prot
Match: RS24_SPOFR (40S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.9e-42
Identity = 84/132 (63.64%), Postives = 104/132 (78.79%), Query Frame = 1


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           M +   TIRTRKFMTNRLL+RKQ V DVLHPG+P VSK E++EKL ++Y V  P+ +FVF
Sbjct: 1   MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVT-PDVVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
            F+T+FGGGKSTGF LIYD+++ AKK+EPK+RL R+GL  K   +RKQ KERKNR KK+R
Sbjct: 61  GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 120

Query: 121 GVKKTKASDAAK 133
           G KK+K   AAK
Sbjct: 121 GTKKSKVGAAAK 131

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BLAST of Cucsa.133470 vs. Swiss-Prot
Match: RS24_BOVIN (40S ribosomal protein S24 OS=Bos taurus GN=RPS24 PE=2 SV=2)

HSP 1 Score: 165.2 bits (417), Expect = 4.9e-40
Identity = 85/132 (64.39%), Postives = 99/132 (75.00%), Query Frame = 1


Query: 6   VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTH 65
           VTIRTRKFMTNRLL RKQ VIDVLHPG+  V K E++EKL ++Y    P+ IFVF FRTH
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTH 64

Query: 66  FGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKT 125
           FGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG  K 
Sbjct: 65  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 124

Query: 126 KASDAAKGGKKK 138
                   GKKK
Sbjct: 125 NVG----AGKKK 131

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BLAST of Cucsa.133470 vs. Swiss-Prot
Match: RS24_PONAB (40S ribosomal protein S24 OS=Pongo abelii GN=RPS24 PE=2 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 4.9e-40
Identity = 85/132 (64.39%), Postives = 99/132 (75.00%), Query Frame = 1


Query: 6   VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTH 65
           VTIRTRKFMTNRLL RKQ VIDVLHPG+  V K E++EKL ++Y    P+ IFVF FRTH
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTH 64

Query: 66  FGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKT 125
           FGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG  K 
Sbjct: 65  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 124

Query: 126 KASDAAKGGKKK 138
                   GKKK
Sbjct: 125 NVG----AGKKK 131

[Close]

BLAST of Cucsa.133470 vs. TrEMBL
Match: A0A0A0LFK1_CUCSA (40S ribosomal protein S24 OS=Cucumis sativus GN=Csa_2G012120 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 1.1e-70
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKGGKKK 138
           GVKKTKASDAAKGGKKK
Sbjct: 121 GVKKTKASDAAKGGKKK 137

[Close]

BLAST of Cucsa.133470 vs. TrEMBL
Match: E5GBS0_CUCME (40S ribosomal protein S24 OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 3.5e-69
Identity = 134/137 (97.81%), Postives = 135/137 (98.54%), Query Frame = 1


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKL RIYDVKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKGGKKK 138
           GVKKTKASDAAK GKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Cucsa.133470 vs. TrEMBL
Match: A0A0A0LYE3_CUCSA (40S ribosomal protein S24 OS=Cucumis sativus GN=Csa_1G696420 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 4.6e-69
Identity = 135/137 (98.54%), Postives = 135/137 (98.54%), Query Frame = 1


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKL RIYDVKD NAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKGGKKK 138
           GVKKTKASDAAKGGKKK
Sbjct: 121 GVKKTKASDAAKGGKKK 137

[Close]

BLAST of Cucsa.133470 vs. TrEMBL
Match: A0A0F7G7L7_9ROSI (40S ribosomal protein S24 OS=Betula luminifera PE=2 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 3.9e-68
Identity = 132/137 (96.35%), Postives = 135/137 (98.54%), Query Frame = 1


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKL R+Y+VKDPN+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLSRMYEVKDPNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKGGKKK 138
           GVKKTKASDAAK GKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Cucsa.133470 vs. TrEMBL
Match: A0A068U2P0_COFCA (40S ribosomal protein S24 OS=Coffea canephora GN=GSCOC_T00037054001 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 6.7e-68
Identity = 131/137 (95.62%), Postives = 135/137 (98.54%), Query Frame = 1


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKL R+Y+VKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDTKVEKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKGGKKK 138
           GVKKTKA DAAKGGKKK
Sbjct: 121 GVKKTKAGDAAKGGKKK 137

[Close]

BLAST of Cucsa.133470 vs. TAIR10
Match: AT3G04920.1 (AT3G04920.1 Ribosomal protein S24e family protein)

HSP 1 Score: 242.3 bits (617), Expect = 1.8e-64
Identity = 119/132 (90.15%), Postives = 128/132 (96.97%), Query Frame = 1


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELKEKL R+Y+VKDPNAIFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA DA K
Sbjct: 121 GVKKTKAGDAKK 132

[Close]

BLAST of Cucsa.133470 vs. TAIR10
Match: AT5G28060.1 (AT5G28060.1 Ribosomal protein S24e family protein)

HSP 1 Score: 236.5 bits (602), Expect = 9.8e-63
Identity = 115/132 (87.12%), Postives = 125/132 (94.70%), Query Frame = 1


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSKAELKEKL R+Y+VKDPNAIF F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA D  K
Sbjct: 121 GVKKTKAGDTKK 132

[Close]

BLAST of Cucsa.133470 vs. NCBI nr
Match: gi|449442901|ref|XP_004139219.1| (PREDICTED: 40S ribosomal protein S24-1 [Cucumis sativus])

HSP 1 Score: 273.9 bits (699), Expect = 1.6e-70
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKGGKKK 138
           GVKKTKASDAAKGGKKK
Sbjct: 121 GVKKTKASDAAKGGKKK 137

[Close]

BLAST of Cucsa.133470 vs. NCBI nr
Match: gi|659070580|ref|XP_008455742.1| (PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo])

HSP 1 Score: 268.9 bits (686), Expect = 5.1e-69
Identity = 134/137 (97.81%), Postives = 135/137 (98.54%), Query Frame = 1


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKL RIYDVKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKGGKKK 138
           GVKKTKASDAAK GKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Cucsa.133470 vs. NCBI nr
Match: gi|449449533|ref|XP_004142519.1| (PREDICTED: 40S ribosomal protein S24-1-like [Cucumis sativus])

HSP 1 Score: 268.5 bits (685), Expect = 6.6e-69
Identity = 135/137 (98.54%), Postives = 135/137 (98.54%), Query Frame = 1


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKL RIYDVKD NAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKGGKKK 138
           GVKKTKASDAAKGGKKK
Sbjct: 121 GVKKTKASDAAKGGKKK 137

[Close]

BLAST of Cucsa.133470 vs. NCBI nr
Match: gi|747071407|ref|XP_011082571.1| (PREDICTED: 40S ribosomal protein S24-1 [Sesamum indicum])

HSP 1 Score: 267.3 bits (682), Expect = 1.5e-68
Identity = 133/137 (97.08%), Postives = 135/137 (98.54%), Query Frame = 1


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKL R+Y+VKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKGGKKK 138
           GVKKTKA DAAKGGKKK
Sbjct: 121 GVKKTKAGDAAKGGKKK 137

[Close]

BLAST of Cucsa.133470 vs. NCBI nr
Match: gi|659125520|ref|XP_008462725.1| (PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo])

HSP 1 Score: 265.8 bits (678), Expect = 4.3e-68
Identity = 133/137 (97.08%), Postives = 134/137 (97.81%), Query Frame = 1


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKL RIYDVKD NAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKGGKKK 138
           GVKKTKASDAAK GKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

The following BLAST results are available for this feature:

BLAST of Cucsa.133470 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS241_ARATH	3.2e-63	90.15	40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1	[more]
RS242_ARATH	1.7e-61	87.12	40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2	[more]
RS24_SPOFR	6.9e-42	63.64	40S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2 SV=1	[more]
RS24_BOVIN	4.9e-40	64.39	40S ribosomal protein S24 OS=Bos taurus GN=RPS24 PE=2 SV=2	[more]
RS24_PONAB	4.9e-40	64.39	40S ribosomal protein S24 OS=Pongo abelii GN=RPS24 PE=2 SV=1	[more]

BLAST of Cucsa.133470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFK1_CUCSA	1.1e-70	100.00	40S ribosomal protein S24 OS=Cucumis sativus GN=Csa_2G012120 PE=3 SV=1	[more]
E5GBS0_CUCME	3.5e-69	97.81	40S ribosomal protein S24 OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
A0A0A0LYE3_CUCSA	4.6e-69	98.54	40S ribosomal protein S24 OS=Cucumis sativus GN=Csa_1G696420 PE=3 SV=1	[more]
A0A0F7G7L7_9ROSI	3.9e-68	96.35	40S ribosomal protein S24 OS=Betula luminifera PE=2 SV=1	[more]
A0A068U2P0_COFCA	6.7e-68	95.62	40S ribosomal protein S24 OS=Coffea canephora GN=GSCOC_T00037054001 PE=3 SV=1	[more]

BLAST of Cucsa.133470 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G04920.1	1.8e-64	90.15	Ribosomal protein S24e family protein	[more]
AT5G28060.1	9.8e-63	87.12	Ribosomal protein S24e family protein	[more]

BLAST of Cucsa.133470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442901\|ref\|XP_004139219.1\|	1.6e-70	100.00	PREDICTED: 40S ribosomal protein S24-1 [Cucumis sativus]	[more]
gi\|659070580\|ref\|XP_008455742.1\|	5.1e-69	97.81	PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo]	[more]
gi\|449449533\|ref\|XP_004142519.1\|	6.6e-69	98.54	PREDICTED: 40S ribosomal protein S24-1-like [Cucumis sativus]	[more]
gi\|747071407\|ref\|XP_011082571.1\|	1.5e-68	97.08	PREDICTED: 40S ribosomal protein S24-1 [Sesamum indicum]	[more]
gi\|659125520\|ref\|XP_008462725.1\|	4.3e-68	97.08	PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001976	Ribosomal_S24e
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR012678	Ribosomal_L23/L15e_core_dom_sf
IPR018098	Ribosomal_S24e_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0000166	nucleotide binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.133470.1	Cucsa.133470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001976	Ribosomal protein S24e	PRODOM	PD006052		coord: 14..86 score: 2.0
IPR001976	Ribosomal protein S24e	HAMAP	MF_00545	Ribosomal_S24e	coord: 4..106 score: 19
IPR001976	Ribosomal protein S24e	PANTHER	PTHR10496	40S RIBOSOMAL PROTEIN S24	coord: 1..137 score: 4.6E
IPR001976	Ribosomal protein S24e	PFAM	PF01282	Ribosomal_S24e	coord: 25..103 score: 1.5
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 6..108 score: 9.5
IPR012678	Ribosomal protein L23/L15e core domain	unknown	SSF54189	Ribosomal proteins S24e, L23 and L15e	coord: 6..108 score: 6.04
IPR018098	Ribosomal S24e conserved site	PROSITE	PS00529	RIBOSOMAL_S24E	coord: 66..88 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.133470	Cla019826	Watermelon (97103) v1	cgywmB223
Cucsa.133470	Csa2G012120	Cucumber (Chinese Long) v2	cgycuB184
Cucsa.133470	MELO3C004360	Melon (DHL92) v3.5.1	cgymeB216
Cucsa.133470	ClCG02G016390	Watermelon (Charleston Gray)	cgywcgB218
Cucsa.133470	CSPI02G03200	Wild cucumber (PI 183967)	cgycpiB187
Cucsa.133470	CmaCh12G011060	Cucurbita maxima (Rimu)	cgycmaB0364
Cucsa.133470	CmaCh05G011840	Cucurbita maxima (Rimu)	cgycmaB0365
Cucsa.133470	CmoCh05G012080	Cucurbita moschata (Rifu)	cgycmoB0362
Cucsa.133470	CmoCh12G011250	Cucurbita moschata (Rifu)	cgycmoB0359
Cucsa.133470	Cp4.1LG07g09220	Cucurbita pepo (Zucchini)	cgycpeB0356
Cucsa.133470	Cp4.1LG11g09820	Cucurbita pepo (Zucchini)	cgycpeB0351
Cucsa.133470	MELO3C004360.2	Melon (DHL92) v3.6.1	cgymedB213
Cucsa.133470	CsaV3_2G004340	Cucumber (Chinese Long) v3	cgycucB190
Cucsa.133470	Bhi06G001499	Wax gourd	cgywgoB251
Cucsa.133470	Carg23433	Silver-seed gourd	carcgyB0349
Cucsa.133470	Carg17581	Silver-seed gourd	carcgyB0804

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.133470	Bottle gourd (USVL1VR-Ls)	cgylsiB205
Cucsa.133470	Watermelon (97103) v2	cgywmbB213