Cp4.1LG11g09820 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g09820
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	40S ribosomal protein S24
Location	Cp4.1LG11 : 8234518 .. 8236457 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTAGCCCTCCAATGACTTTATTTACCAGCTAGGGTTTTGCAGCCTTCTTCTTCAAAATCGCAAATCAGGTAATCAGAGCAGCCGTTCCTCTGCCCCTTCGCCTTCTTTGAGCTTTTCATCCTCTTCGGAGCACCTCCAGCCATGGCGGACAAGGCAGTCACCATCCGGACCAGGAAGTTCATGACCAACAGGCTCCTATCCAGGAAGCAATTCGTGAGTTTTTCGGATCCTACTCGGCCGTTTTTGCTTTTAGCATTCATTTCGTTTTCGATTTCTGATTGGATTTGTTTCGGATTGATGCTTCGGCGTTTGATTCTTTTCTGCTGAACTTTACTTGGAACTGTACGATTTAACGTTTCTATATCCTTTTGAGGTTTTAGCTTGGACTTTGTTTGTTTGTGGATTCTAGATCGTTGAGTTGCATCTGTTTGACGCTGAAAATGTTTTGTTTAGTTTAAAACCCCAATGTCTTTAAGAAGTCTGAAGTTTTTGATTTCTTTATGATCTTGAGTTTAGTTTTTAGTGTTACTTCTCTAACTACCTTGAAAAATTGATTNGATGAAACTGTTTTGTTTAGTCTAAAACCCAATGTCTTTAAGAAGTCTGAAGTTTTTGATTTCTCTATGATCTTGAGTTTAGAGTTTTTAGTGTTACTTCTCTAACTACCTTGAAAAATTGATTTAGGGTTGCTGATTATGTATCTGGATAGCTCGGTGACTTCTTTTTGTTTTTTAACTATATAATTTTCTGATCTTGATACGAATGGAAGACGTTTTGAAGTCGTTTTTAACTTTTCTGTTTTCTGGTTAATGCAGGTAATTGATGTTCTTCACCCAGGCAGNGATACGAATGGAAAACGTTTTGAAGTCGTTTTTAACTTTTCTGTTTTCTGGTTAATGCAGGTCATTGATGTTCTTCACCCAGGCAGACCCAATGTCTCAAAGGTAGTCCCTTTTTCAGTTCATTTGTTGTTTTTTCTTCTCTGTTATTTATGTTATGCACTCTTTTTAAATGCCTTCAAGATATATCACTCAATCCGAATGGAAACCACATGAATCCAAGCGTTTTTTTTAATTTTTTTTTTTTATGGTGCTCATAGTGTCTATGTTTCTATTATTTGATCTCAAGGCTGAACTGAAGGAGAAATTGGCCAGAATCTATGATGTGAAAGACCCAAATTCTATCTTTGTTTTCAAGTTCAGAACTCACTTTGGTGGTGGTAAATCCACTGGGTTCGGTTTAATCTATGATTCAGTTGAAAATGCAAAGAAGTACGAGCCAAAATACAGGCTAATCAGGGTAATTTACAGTCGCATTTCAAGCACAATTTCAATTATAATGCTCTGAAGTTTTGTTTTCCTCACTTAATGACATTACTCAAGCTGGACTTTTCCTTGTTCTGTCAGAATGGACTCGACACCAAGGTAGAAAAATCAAGAAAGCAAATGAAGGAAAGGAAGAACAGGGCAAAGAAAATCCGCGGAGTCAAGAAGGTAAGTTATATGGCTAGTTGATAATGATCTTGAAATGATAGCTTGACCTTCATGTTAAACATTACCCCTAACCCTATCATTCATGTCTCTTCACAGACCAAGGCTTCAGATGCTGCCAAGGCAGGAAAGAAAAAATGAGATTGATTGCTGGGATTTTGTACCCATCACCAAGGATTATCTGCAGAATCATCGTGATCTCTTTTTAATAGTTTCCTTTTGACTCCTAGATCAAATTATGTTAATCAGTATTTTTGGTTGTTGATTACTAGTGATATGAAAACTTGGTTCTTTGCAGAGGACAAAATTTTTGACGTTACAGGAAATATACATTTCCTTGTGTTCCAAGTTTTTATCAGTTTTTCTACATTCAATTGTTGTTCTTAGATCTTCCAGAAAAAAAGATTATGAGCTTAAGCAAGCTTAACTCATGTTTGTTATTTAGTTTA

mRNA sequence

CCTAGCCCTCCAATGACTTTATTTACCAGCTAGGGTTTTGCAGCCTTCTTCTTCAAAATCGCAAATCAGGTAATCAGAGCAGCCGTTCCTCTGCCCCTTCGCCTTCTTTGAGCTTTTCATCCTCTTCGGAGCACCTCCAGCCATGGCGGACAAGGCAGTCACCATCCGGACCAGGAAGTTCATGACCAACAGGCTCCTATCCAGGAAGCAATTCGTCATTGATGTTCTTCACCCAGGCAGACCCAATGTCTCAAAGGCTGAACTGAAGGAGAAATTGGCCAGAATCTATGATGTGAAAGACCCAAATTCTATCTTTGTTTTCAAGTTCAGAACTCACTTTGGTGGTGGTAAATCCACTGGGTTCGGTTTAATCTATGATTCAGTTGAAAATGCAAAGAAGTACGAGCCAAAATACAGGCTAATCAGGAATGGACTCGACACCAAGGTAGAAAAATCAAGAAAGCAAATGAAGGAAAGGAAGAACAGGGCAAAGAAAATCCGCGGAGTCAAGAAGACCAAGGCTTCAGATGCTGCCAAGGCAGGAAAGAAAAAATGAGATTGATTGCTGGGATTTTGTACCCATCACCAAGGATTATCTGCAGAATCATCGTGATCTCTTTTTAATAGTTTCCTTTTGACTCCTAGATCAAATTATGTTAATCAGTATTTTTGGTTGTTGATTACTAGTGATATGAAAACTTGGTTCTTTGCAGAGGACAAAATTTTTGACGTTACAGGAAATATACATTTCCTTGTGTTCCAAGTTTTTATCAGTTTTTCTACATTCAATTGTTGTTCTTAGATCTTCCAGAAAAAAAGATTATGAGCTTAAGCAAGCTTAACTCATGTTTGTTATTTAGTTTA

Coding sequence (CDS)

ATGGCGGACAAGGCAGTCACCATCCGGACCAGGAAGTTCATGACCAACAGGCTCCTATCCAGGAAGCAATTCGTCATTGATGTTCTTCACCCAGGCAGACCCAATGTCTCAAAGGCTGAACTGAAGGAGAAATTGGCCAGAATCTATGATGTGAAAGACCCAAATTCTATCTTTGTTTTCAAGTTCAGAACTCACTTTGGTGGTGGTAAATCCACTGGGTTCGGTTTAATCTATGATTCAGTTGAAAATGCAAAGAAGTACGAGCCAAAATACAGGCTAATCAGGAATGGACTCGACACCAAGGTAGAAAAATCAAGAAAGCAAATGAAGGAAAGGAAGAACAGGGCAAAGAAAATCCGCGGAGTCAAGAAGACCAAGGCTTCAGATGCTGCCAAGGCAGGAAAGAAAAAATGA

Protein sequence

MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

Homology

[Close]

BLAST of Cp4.1LG11g09820 vs. Swiss-Prot
Match: RS241_ARATH (40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 1.9e-60
Identity = 119/132 (90.15%), Postives = 129/132 (97.73%), Query Frame = 1


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELKEKLAR+Y+VKDPN+IFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA DA K
Sbjct: 121 GVKKTKAGDAKK 132

[Close]

BLAST of Cp4.1LG11g09820 vs. Swiss-Prot
Match: RS242_ARATH (40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2)

HSP 1 Score: 227.3 bits (578), Expect = 1.1e-58
Identity = 115/132 (87.12%), Postives = 126/132 (95.45%), Query Frame = 1


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSKAELKEKLAR+Y+VKDPN+IF F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA D  K
Sbjct: 121 GVKKTKAGDTKK 132

[Close]

BLAST of Cp4.1LG11g09820 vs. Swiss-Prot
Match: RS24_SPOFR (40S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.2e-39
Identity = 85/132 (64.39%), Postives = 105/132 (79.55%), Query Frame = 1


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           M +   TIRTRKFMTNRLL+RKQ V DVLHPG+P VSK E++EKLA++Y V  P+ +FVF
Sbjct: 1   MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVT-PDVVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
            F+T+FGGGKSTGF LIYD+++ AKK+EPK+RL R+GL  K   +RKQ KERKNR KK+R
Sbjct: 61  GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 120

Query: 121 GVKKTKASDAAK 133
           G KK+K   AAK
Sbjct: 121 GTKKSKVGAAAK 131

[Close]

BLAST of Cp4.1LG11g09820 vs. Swiss-Prot
Match: RS24_BOVIN (40S ribosomal protein S24 OS=Bos taurus GN=RPS24 PE=2 SV=2)

HSP 1 Score: 156.0 bits (393), Expect = 3.0e-37
Identity = 87/132 (65.91%), Postives = 101/132 (76.52%), Query Frame = 1


Query: 6   VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVFKFRTH 65
           VTIRTRKFMTNRLL RKQ VIDVLHPG+  V K E++EKLA++Y    P+ IFVF FRTH
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTH 64

Query: 66  FGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKT 125
           FGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG  K 
Sbjct: 65  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 124

Query: 126 KASDAAKAGKKK 138
                  AGKKK
Sbjct: 125 NVG----AGKKK 131

[Close]

BLAST of Cp4.1LG11g09820 vs. Swiss-Prot
Match: RS24_PONAB (40S ribosomal protein S24 OS=Pongo abelii GN=RPS24 PE=2 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.0e-37
Identity = 87/132 (65.91%), Postives = 101/132 (76.52%), Query Frame = 1


Query: 6   VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVFKFRTH 65
           VTIRTRKFMTNRLL RKQ VIDVLHPG+  V K E++EKLA++Y    P+ IFVF FRTH
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTH 64

Query: 66  FGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKT 125
           FGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG  K 
Sbjct: 65  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 124

Query: 126 KASDAAKAGKKK 138
                  AGKKK
Sbjct: 125 NVG----AGKKK 131

[Close]

BLAST of Cp4.1LG11g09820 vs. TrEMBL
Match: E5GBS0_CUCME (40S ribosomal protein S24 OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 4.7e-66
Identity = 135/137 (98.54%), Postives = 137/137 (100.00%), Query Frame = 1


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDPN+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Cp4.1LG11g09820 vs. TrEMBL
Match: A0A0F7G7L7_9ROSI (40S ribosomal protein S24 OS=Betula luminifera PE=2 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 2.4e-65
Identity = 134/137 (97.81%), Postives = 137/137 (100.00%), Query Frame = 1


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKL+R+Y+VKDPNSIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLSRMYEVKDPNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Cp4.1LG11g09820 vs. TrEMBL
Match: A0A0A0LFK1_CUCSA (40S ribosomal protein S24 OS=Cucumis sativus GN=Csa_2G012120 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 3.1e-65
Identity = 134/137 (97.81%), Postives = 135/137 (98.54%), Query Frame = 1


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKL RIYDVKDPN+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAK GKKK
Sbjct: 121 GVKKTKASDAAKGGKKK 137

[Close]

BLAST of Cp4.1LG11g09820 vs. TrEMBL
Match: A0A0A0LYE3_CUCSA (40S ribosomal protein S24 OS=Cucumis sativus GN=Csa_1G696420 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 8.9e-65
Identity = 134/137 (97.81%), Postives = 135/137 (98.54%), Query Frame = 1


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKD N+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAK GKKK
Sbjct: 121 GVKKTKASDAAKGGKKK 137

[Close]

BLAST of Cp4.1LG11g09820 vs. TrEMBL
Match: B7FMK4_MEDTR (40S ribosomal protein S24 OS=Medicago truncatula GN=MTR_1g081410 PE=2 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.5e-64
Identity = 132/137 (96.35%), Postives = 135/137 (98.54%), Query Frame = 1


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELKEKLARIYDVKDPN++FVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRL+RNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLVRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKA DAAKAGKKK
Sbjct: 121 GVKKTKAGDAAKAGKKK 137

[Close]

BLAST of Cp4.1LG11g09820 vs. TAIR10
Match: AT3G04920.1 (AT3G04920.1 Ribosomal protein S24e family protein)

HSP 1 Score: 233.0 bits (593), Expect = 1.1e-61
Identity = 119/132 (90.15%), Postives = 129/132 (97.73%), Query Frame = 1


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELKEKLAR+Y+VKDPN+IFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA DA K
Sbjct: 121 GVKKTKAGDAKK 132

[Close]

BLAST of Cp4.1LG11g09820 vs. TAIR10
Match: AT5G28060.1 (AT5G28060.1 Ribosomal protein S24e family protein)

HSP 1 Score: 227.3 bits (578), Expect = 5.9e-60
Identity = 115/132 (87.12%), Postives = 126/132 (95.45%), Query Frame = 1


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSKAELKEKLAR+Y+VKDPN+IF F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA D  K
Sbjct: 121 GVKKTKAGDTKK 132

[Close]

BLAST of Cp4.1LG11g09820 vs. NCBI nr
Match: gi|659070580|ref|XP_008455742.1| (PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo])

HSP 1 Score: 258.5 bits (659), Expect = 6.8e-66
Identity = 135/137 (98.54%), Postives = 137/137 (100.00%), Query Frame = 1


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDPN+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Cp4.1LG11g09820 vs. NCBI nr
Match: gi|645222500|ref|XP_008218192.1| (PREDICTED: 40S ribosomal protein S24-1 [Prunus mume])

HSP 1 Score: 256.1 bits (653), Expect = 3.4e-65
Identity = 133/137 (97.08%), Postives = 137/137 (100.00%), Query Frame = 1


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLAR+Y+VKDPNSIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARLYEVKDPNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKIEKSRKQLKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Cp4.1LG11g09820 vs. NCBI nr
Match: gi|819320229|gb|AKG50112.1| (ribosomal protein S24 [Betula luminifera])

HSP 1 Score: 256.1 bits (653), Expect = 3.4e-65
Identity = 134/137 (97.81%), Postives = 137/137 (100.00%), Query Frame = 1


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKL+R+Y+VKDPNSIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLSRMYEVKDPNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Cp4.1LG11g09820 vs. NCBI nr
Match: gi|449442901|ref|XP_004139219.1| (PREDICTED: 40S ribosomal protein S24-1 [Cucumis sativus])

HSP 1 Score: 255.8 bits (652), Expect = 4.4e-65
Identity = 134/137 (97.81%), Postives = 135/137 (98.54%), Query Frame = 1


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKL RIYDVKDPN+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAK GKKK
Sbjct: 121 GVKKTKASDAAKGGKKK 137

[Close]

BLAST of Cp4.1LG11g09820 vs. NCBI nr
Match: gi|659125520|ref|XP_008462725.1| (PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo])

HSP 1 Score: 255.4 bits (651), Expect = 5.8e-65
Identity = 134/137 (97.81%), Postives = 136/137 (99.27%), Query Frame = 1


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKD N+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g09820 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS241_ARATH	1.9e-60	90.15	40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1	[more]
RS242_ARATH	1.1e-58	87.12	40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2	[more]
RS24_SPOFR	3.2e-39	64.39	40S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2 SV=1	[more]
RS24_BOVIN	3.0e-37	65.91	40S ribosomal protein S24 OS=Bos taurus GN=RPS24 PE=2 SV=2	[more]
RS24_PONAB	3.0e-37	65.91	40S ribosomal protein S24 OS=Pongo abelii GN=RPS24 PE=2 SV=1	[more]

BLAST of Cp4.1LG11g09820 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBS0_CUCME	4.7e-66	98.54	40S ribosomal protein S24 OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
A0A0F7G7L7_9ROSI	2.4e-65	97.81	40S ribosomal protein S24 OS=Betula luminifera PE=2 SV=1	[more]
A0A0A0LFK1_CUCSA	3.1e-65	97.81	40S ribosomal protein S24 OS=Cucumis sativus GN=Csa_2G012120 PE=3 SV=1	[more]
A0A0A0LYE3_CUCSA	8.9e-65	97.81	40S ribosomal protein S24 OS=Cucumis sativus GN=Csa_1G696420 PE=3 SV=1	[more]
B7FMK4_MEDTR	1.5e-64	96.35	40S ribosomal protein S24 OS=Medicago truncatula GN=MTR_1g081410 PE=2 SV=1	[more]

BLAST of Cp4.1LG11g09820 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G04920.1	1.1e-61	90.15	Ribosomal protein S24e family protein	[more]
AT5G28060.1	5.9e-60	87.12	Ribosomal protein S24e family protein	[more]

BLAST of Cp4.1LG11g09820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659070580\|ref\|XP_008455742.1\|	6.8e-66	98.54	PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo]	[more]
gi\|645222500\|ref\|XP_008218192.1\|	3.4e-65	97.08	PREDICTED: 40S ribosomal protein S24-1 [Prunus mume]	[more]
gi\|819320229\|gb\|AKG50112.1\|	3.4e-65	97.81	ribosomal protein S24 [Betula luminifera]	[more]
gi\|449442901\|ref\|XP_004139219.1\|	4.4e-65	97.81	PREDICTED: 40S ribosomal protein S24-1 [Cucumis sativus]	[more]
gi\|659125520\|ref\|XP_008462725.1\|	5.8e-65	97.81	PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **INTERPRO**
Term	Definition
IPR018098	Ribosomal_S24e_CS
IPR012678	Ribosomal_L23/L15e_core_dom_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR001976	Ribosomal_S24e

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g09820.1	Cp4.1LG11g09820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001976	Ribosomal protein S24e	PRODOM	PD006052		coord: 14..86 score: 1.0
IPR001976	Ribosomal protein S24e	HAMAP	MF_00545	Ribosomal_S24e	coord: 4..106 score: 19
IPR001976	Ribosomal protein S24e	PANTHER	PTHR10496	40S RIBOSOMAL PROTEIN S24	coord: 1..137 score: 2.5E
IPR001976	Ribosomal protein S24e	PFAM	PF01282	Ribosomal_S24e	coord: 25..103 score: 1.1
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 6..108 score: 2.1
IPR012678	Ribosomal protein L23/L15e core domain	unknown	SSF54189	Ribosomal proteins S24e, L23 and L15e	coord: 6..108 score: 1.12
IPR018098	Ribosomal S24e conserved site	PROSITE	PS00529	RIBOSOMAL_S24E	coord: 66..88 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG11g09820	Cucsa.133470	Cucumber (Gy14) v1	cgycpeB0351
Cp4.1LG11g09820	CmaCh12G011060	Cucurbita maxima (Rimu)	cmacpeB171
Cp4.1LG11g09820	CmaCh05G011840	Cucurbita maxima (Rimu)	cmacpeB767
Cp4.1LG11g09820	CmoCh05G012080	Cucurbita moschata (Rifu)	cmocpeB721
Cp4.1LG11g09820	CmoCh12G011250	Cucurbita moschata (Rifu)	cmocpeB147
Cp4.1LG11g09820	Cla019826	Watermelon (97103) v1	cpewmB113
Cp4.1LG11g09820	Csa2G012120	Cucumber (Chinese Long) v2	cpecuB103
Cp4.1LG11g09820	MELO3C004360	Melon (DHL92) v3.5.1	cpemeB099
Cp4.1LG11g09820	ClCG02G016390	Watermelon (Charleston Gray)	cpewcgB104
Cp4.1LG11g09820	CSPI02G03200	Wild cucumber (PI 183967)	cpecpiB100
Cp4.1LG11g09820	MELO3C004360.2	Melon (DHL92) v3.6.1	cpemedB123
Cp4.1LG11g09820	CsaV3_2G004340	Cucumber (Chinese Long) v3	cpecucB0114
Cp4.1LG11g09820	Bhi06G001499	Wax gourd	cpewgoB0114
Cp4.1LG11g09820	CsGy2G003310	Cucumber (Gy14) v2	cgybcpeB168
Cp4.1LG11g09820	Carg17581	Silver-seed gourd	carcpeB1005
Cp4.1LG11g09820	Carg23433	Silver-seed gourd	carcpeB0410

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG11g09820	Cp4.1LG07g09220	Cucurbita pepo (Zucchini)	cpecpeB139

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG11g09820	Bottle gourd (USVL1VR-Ls)	cpelsiB074