Carg23433 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23433
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	40S ribosomal protein S24
Location	Cucurbita_argyrosperma_scaffold_335 : 159207 .. 161076 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTCTTCAAAATCACAAATCAGGTAATCAGAGCAGCCGTTCCTCTGCCCCTTCGCCTTCTTTGAGCTTTTCAACCTCTTCGGAGCACCTCCAGCCATGGCGGACAAGGCAGTCACCATCCGGACCAGGAAGTTCATGACCAACAGGCTCCTATCCAGAAAGCAATTTGTGAGTTTTTCGGATCTTACTCAGCCGTTTTTTGCTTTTAGCATTCATTTCGTTTTCGATTTTTGATTGGATTTGTTTCGGATTGATGCTTCGGCGTTTGATTCTTGTCTGCTGAACTTTACTTGGAACTGTACGAGTAAATGTTTCTATATCTTTTTTGAGGATTTTGCTTGGACTTCGTTTGTTTGTGGATTCTGGATCGTTGTGTTGCACTTGTTTGACGCTGAAAATGTTTTGTTTAGTCTAAAACCCCAATGTCTTTAAGAAGTTTGAAGTTTTTGGTTTCTCTATGATCTCGAGTTTAGAGCTTTTAGTGTTACTTCTCTACCTACTGATTTAGGATTGCTGATTATGTATCTGGATAGCTTGGTGACTTCTTTTTGTTTTTTAACTTTATAATTTTCATCTTAATACGAATGGAAAACGTTTTGAAGTCGTTGTTAACTTTTTTGTTTTCTGGTTAATGCAGGTCATTGATGTTCTTCACCCAGGAAGACCCAATGTCTCAAAGGTAAGCCCTTTTCGAGTTCATTTGTTGTTTTTTCTTCTCTGTTATTTATGTTATGTACTCTTTTTAAGTGCCTTAAAGATATATCACTCAATCCGAATGGAAACTACATGAATCTAAGCGTTTTTTTTTTTATTGTGTTCCTTTCTCCACCCTCCCCCTTTTGGAACATAATTCTGCTGCCTGAATAGCTAACTTTTCAACCAATATCAGATTTTTTCTACATAGGTTCCTTAATTTCGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTGAATTTTGCCTATTGAAATCGTCAAAATCTTTATTTTCTTTCACGCTTACGGAATCAGAGAGTAGTTTTCTGGCTCATGCAGCTGATTTTTTTTTTGTGTGTGTTTTGGCTTATGGTGCTCATAATGTCTATGTTTTCTATTTCTTGGTCTCAAGGCTGAACTGAAGGAGAAGTTGGCCAGAATCTATGATGTGAAAGACCCAAATTCTATCTTTGTTTTCAAGTTCAGAACTCACTTTGGTGGTGGTAAATCCACTGGGTTCGGTTTAATCTATGATTCGGTTGAAAATGCAAAGAAGTACGAGCCAAAATACAGGCTAATCAGGGTAATTTACAGTCGCATTTCAAGCACAATTTCAATTATAATGCTCTGAAGTTTTGCTTTCATCACTTAATGACATTACTCAAGCTGGACTTTTCCTTCTGTCAGAATGGACTCGACACCAAGGTAGAAAAATCAAGAAAGCAAATGAAGGAAAGGAAGAACAGGGCAAAGAAAATCCGCGGAGTCAAGAAGGTAAGTTATATGGCTAGTTGATAATGATCTTGAAATGATAGCTTGACCTTCATGTTAAAAATCACCACTAACCCTATCATTCATGTCTCTTCACAGACCAAGGCTTCAGATGCTGCCAAGGCAGGAAAGAAAAAATGAGATTGATTGCTGGAATTTTGTACCCATCACCAAGGATTATCTGCAGAATCGTCTTGATCTCTTTTTAATAGTTTCCTTTAGTTTTGTTTTTACTCCTAGATCAAATTATGTTAATCAGTATTTTTGGTTGTTGATTACTAGTGATATGAAAACTTGGTTCTTTGCAGAGGACAAAATTTTTGACGTTACGGGAAATATACATTTCCTTGTGTTTTTTTACCATCATTTGAGGCTTATCGTTGGTAGATTATGAAAAATGATTTCTGGG

mRNA sequence

TCTTCTTCAAAATCACAAATCAGGTAATCAGAGCAGCCGTTCCTCTGCCCCTTCGCCTTCTTTGAGCTTTTCAACCTCTTCGGAGCACCTCCAGCCATGGCGGACAAGGCAGTCACCATCCGGACCAGGAAGTTCATGACCAACAGGCTCCTATCCAGAAAGCAATTTGTCATTGATGTTCTTCACCCAGGAAGACCCAATGTCTCAAAGGCTGAACTGAAGGAGAAGTTGGCCAGAATCTATGATGTGAAAGACCCAAATTCTATCTTTGTTTTCAAGTTCAGAACTCACTTTGGTGGTGGTAAATCCACTGGGTTCGGTTTAATCTATGATTCGGTTGAAAATGCAAAGAAGTACGAGCCAAAATACAGGCTAATCAGGAATGGACTCGACACCAAGGTAGAAAAATCAAGAAAGCAAATGAAGGAAAGGAAGAACAGGGCAAAGAAAATCCGCGGAGTCAAGAAGACCAAGGCTTCAGATGCTGCCAAGGCAGGAAAGAAAAAATGAGATTGATTGCTGGAATTTTGTACCCATCACCAAGGATTATCTGCAGAATCGTCTTGATCTCTTTTTAATAGTTTCCTTTAGTTTTGTTTTTACTCCTAGATCAAATTATGTTAATCAGTATTTTTGGTTGTTGATTACTAGTGATATGAAAACTTGGTTCTTTGCAGAGGACAAAATTTTTGACGTTACGGGAAATATACATTTCCTTGTGTTTTTTTACCATCATTTGAGGCTTATCGTTGGTAGATTATGAAAAATGATTTCTGGG

Coding sequence (CDS)

ATGGCGGACAAGGCAGTCACCATCCGGACCAGGAAGTTCATGACCAACAGGCTCCTATCCAGAAAGCAATTTGTCATTGATGTTCTTCACCCAGGAAGACCCAATGTCTCAAAGGCTGAACTGAAGGAGAAGTTGGCCAGAATCTATGATGTGAAAGACCCAAATTCTATCTTTGTTTTCAAGTTCAGAACTCACTTTGGTGGTGGTAAATCCACTGGGTTCGGTTTAATCTATGATTCGGTTGAAAATGCAAAGAAGTACGAGCCAAAATACAGGCTAATCAGGAATGGACTCGACACCAAGGTAGAAAAATCAAGAAAGCAAATGAAGGAAAGGAAGAACAGGGCAAAGAAAATCCGCGGAGTCAAGAAGACCAAGGCTTCAGATGCTGCCAAGGCAGGAAAGAAAAAATGA

Protein sequence

MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

Homology

[Close]

BLAST of Carg23433 vs. NCBI nr
Match: XP_022946610.1 (40S ribosomal protein S24-1 [Cucurbita moschata] >XP_023545845.1 40S ribosomal protein S24-1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211.1 bits (536), Expect = 2.4e-51
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 104

[Close]

BLAST of Carg23433 vs. NCBI nr
Match: XP_008455742.1 (PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo] >ADN33912.1 40S ribosomal protein s24 [Cucumis melo subsp. melo])

HSP 1 Score: 209.5 bits (532), Expect = 7.0e-51
Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDPN+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 104

[Close]

BLAST of Carg23433 vs. NCBI nr
Match: XP_022999263.1 (40S ribosomal protein S24-1-like [Cucurbita maxima])

HSP 1 Score: 209.5 bits (532), Expect = 7.0e-51
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKL RIYDVKDPNSIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 104

[Close]

BLAST of Carg23433 vs. NCBI nr
Match: KZV25444.1 (hypothetical protein F511_17222 [Dorcoceras hygrometricum])

HSP 1 Score: 208.8 bits (530), Expect = 1.2e-50
Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLAR+YDVKDPN+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARMYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 104

[Close]

BLAST of Carg23433 vs. NCBI nr
Match: XP_022143165.1 (40S ribosomal protein S24-1 [Momordica charantia])

HSP 1 Score: 208.8 bits (530), Expect = 1.2e-50
Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKL+RIYDVKDPN+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLSRIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 104

[Close]

BLAST of Carg23433 vs. TAIR10
Match: AT3G04920.1 (Ribosomal protein S24e family protein)

HSP 1 Score: 196.1 bits (497), Expect = 1.5e-50
Identity = 94/104 (90.38%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELKEKLAR+Y+VKDPN+IFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDTK+EK
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEK 104

[Close]

BLAST of Carg23433 vs. TAIR10
Match: AT5G28060.1 (Ribosomal protein S24e family protein)

HSP 1 Score: 191.8 bits (486), Expect = 2.8e-49
Identity = 91/104 (87.50%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSKAELKEKLAR+Y+VKDPN+IF F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDTK+EK
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEK 104

[Close]

BLAST of Carg23433 vs. Swiss-Prot
Match: sp|Q9SS17|RS241_ARATH (40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.6e-49
Identity = 94/104 (90.38%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELKEKLAR+Y+VKDPN+IFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDTK+EK
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEK 104

[Close]

BLAST of Carg23433 vs. Swiss-Prot
Match: sp|Q8LC83|RS242_ARATH (40S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2)

HSP 1 Score: 191.8 bits (486), Expect = 5.0e-48
Identity = 91/104 (87.50%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSKAELKEKLAR+Y+VKDPN+IF F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDTK+EK
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEK 104

[Close]

BLAST of Carg23433 vs. Swiss-Prot
Match: sp|Q75K27|RS24_DICDI (40S ribosomal protein S24 OS=Dictyostelium discoideum OX=44689 GN=rps24 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 7.7e-33
Identity = 67/101 (66.34%), Postives = 83/101 (82.18%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           M   AV +RTRK +TNRLLSRKQFV++V+HPG+ NVSK +LK  +A+++ V DP +IF+F
Sbjct: 1   MDKAAVVVRTRKVLTNRLLSRKQFVVEVVHPGKANVSKKDLKTTIAKLHKVADPETIFLF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTK 102
            F+T FGGGKSTGFGLIYD++E AKKYEPKYRL R GL TK
Sbjct: 61  GFKTDFGGGKSTGFGLIYDNLEIAKKYEPKYRLARAGLYTK 101

[Close]

BLAST of Carg23433 vs. Swiss-Prot
Match: sp|Q962Q6|RS24_SPOFR (40S ribosomal protein S24 OS=Spodoptera frugiperda OX=7108 GN=RpS24 PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.5e-31
Identity = 66/101 (65.35%), Postives = 83/101 (82.18%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           M +   TIRTRKFMTNRLL+RKQ V DVLHPG+P VSK E++EKLA++Y V  P+ +FVF
Sbjct: 1   MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTK 102
            F+T+FGGGKSTGF LIYD+++ AKK+EPK+RL R+GL  K
Sbjct: 61  GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK 100

[Close]

BLAST of Carg23433 vs. Swiss-Prot
Match: sp|Q56JU9|RS24_BOVIN (40S ribosomal protein S24 OS=Bos taurus OX=9913 GN=RPS24 PE=2 SV=2)

HSP 1 Score: 136.0 bits (341), Expect = 3.2e-31
Identity = 67/96 (69.79%), Postives = 79/96 (82.29%), Query Frame = 0


Query: 6   VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVFKFRTH 65
           VTIRTRKFMTNRLL RKQ VIDVLHPG+  V K E++EKLA++Y    P+ IFVF FRTH
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRTH 64

Query: 66  FGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTK 102
           FGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K
Sbjct: 65  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEK 99

[Close]

BLAST of Carg23433 vs. TrEMBL
Match: tr|A0A1S3C1J8|A0A1S3C1J8_CUCME (40S ribosomal protein S24 OS=Cucumis melo OX=3656 GN=LOC103495842 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 4.7e-51
Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDPN+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 104

[Close]

BLAST of Carg23433 vs. TrEMBL
Match: tr|E5GBS0|E5GBS0_CUCME (40S ribosomal protein S24 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 4.7e-51
Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDPN+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 104

[Close]

BLAST of Carg23433 vs. TrEMBL
Match: tr|A0A061EL13|A0A061EL13_THECC (40S ribosomal protein S24 OS=Theobroma cacao OX=3641 GN=TCM_020621 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.0e-50
Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLAR+Y+VKDPNSIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARMYEVKDPNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 104

[Close]

BLAST of Carg23433 vs. TrEMBL
Match: tr|A0A0A0LFK1|A0A0A0LFK1_CUCSA (40S ribosomal protein S24 OS=Cucumis sativus OX=3659 GN=Csa_2G012120 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.0e-50
Identity = 102/104 (98.08%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKL RIYDVKDPN+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 104

[Close]

BLAST of Carg23433 vs. TrEMBL
Match: tr|A0A1U8HQZ2|A0A1U8HQZ2_GOSHI (40S ribosomal protein S24 OS=Gossypium hirsutum OX=3635 GN=LOC107888763 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.4e-50
Identity = 101/104 (97.12%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLAR+Y+VKDPNSIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARMYEVKDPNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 104

The following BLAST results are available for this feature:

BLAST of Carg23433 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946610.1	2.4e-51	100.00	40S ribosomal protein S24-1 [Cucurbita moschata] >XP_023545845.1 40S ribosomal p...	[more]
XP_008455742.1	7.0e-51	98.08	PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo] >ADN33912.1 40S ribosomal ...	[more]
XP_022999263.1	7.0e-51	99.04	40S ribosomal protein S24-1-like [Cucurbita maxima]	[more]
KZV25444.1	1.2e-50	98.08	hypothetical protein F511_17222 [Dorcoceras hygrometricum]	[more]
XP_022143165.1	1.2e-50	98.08	40S ribosomal protein S24-1 [Momordica charantia]	[more]

BLAST of Carg23433 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G04920.1	1.5e-50	90.38	Ribosomal protein S24e family protein	[more]
AT5G28060.1	2.8e-49	87.50	Ribosomal protein S24e family protein	[more]

BLAST of Carg23433 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SS17\|RS241_ARATH	2.6e-49	90.38	40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1	[more]
sp\|Q8LC83\|RS242_ARATH	5.0e-48	87.50	40S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2	[more]
sp\|Q75K27\|RS24_DICDI	7.7e-33	66.34	40S ribosomal protein S24 OS=Dictyostelium discoideum OX=44689 GN=rps24 PE=3 SV=...	[more]
sp\|Q962Q6\|RS24_SPOFR	1.5e-31	65.35	40S ribosomal protein S24 OS=Spodoptera frugiperda OX=7108 GN=RpS24 PE=2 SV=1	[more]
sp\|Q56JU9\|RS24_BOVIN	3.2e-31	69.79	40S ribosomal protein S24 OS=Bos taurus OX=9913 GN=RPS24 PE=2 SV=2	[more]

BLAST of Carg23433 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C1J8\|A0A1S3C1J8_CUCME	4.7e-51	98.08	40S ribosomal protein S24 OS=Cucumis melo OX=3656 GN=LOC103495842 PE=3 SV=1	[more]
tr\|E5GBS0\|E5GBS0_CUCME	4.7e-51	98.08	40S ribosomal protein S24 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
tr\|A0A061EL13\|A0A061EL13_THECC	1.0e-50	98.08	40S ribosomal protein S24 OS=Theobroma cacao OX=3641 GN=TCM_020621 PE=3 SV=1	[more]
tr\|A0A0A0LFK1\|A0A0A0LFK1_CUCSA	1.0e-50	98.08	40S ribosomal protein S24 OS=Cucumis sativus OX=3659 GN=Csa_2G012120 PE=3 SV=1	[more]
tr\|A0A1U8HQZ2\|A0A1U8HQZ2_GOSHI	1.4e-50	97.12	40S ribosomal protein S24 OS=Gossypium hirsutum OX=3635 GN=LOC107888763 PE=3 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR012678	Ribosomal_L23/L15e_core_dom_sf
IPR018098	Ribosomal_S24e_CS
IPR001976	Ribosomal_S24e

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23433-RA	Carg23433-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001976	Ribosomal protein S24e	PFAM	PF01282	Ribosomal_S24e	coord: 25..103 e-value: 1.4E-37 score: 127.4
IPR001976	Ribosomal protein S24e	PANTHER	PTHR10496	40S RIBOSOMAL PROTEIN S24	coord: 3..132
IPR001976	Ribosomal protein S24e	PRODOM	PD006052		coord: 14..86 e-value: 1.0E-33 score: 353.0
IPR001976	Ribosomal protein S24e	HAMAP	MF_00545	Ribosomal_S24e	coord: 4..106 score: 19.748
None	No IPR available	GENE3D	G3DSA:3.30.70.3370		coord: 1..134 e-value: 2.6E-63 score: 213.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..137
None	No IPR available	PANTHER	PTHR10496:SF5	SUBFAMILY NOT NAMED	coord: 3..132
IPR018098	Ribosomal S24e conserved site	PROSITE	PS00529	RIBOSOMAL_S24E	coord: 66..88
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	SSF54189	Ribosomal proteins S24e, L23 and L15e	coord: 6..108

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23433	Cla019826	Watermelon (97103) v1	carwmB0290
Carg23433	Csa2G012120	Cucumber (Chinese Long) v2	carcuB0324
Carg23433	MELO3C004360	Melon (DHL92) v3.5.1	carmeB0298
Carg23433	ClCG02G016390	Watermelon (Charleston Gray)	carwcgB0290
Carg23433	CSPI02G03200	Wild cucumber (PI 183967)	carcpiB0330
Carg23433	Cucsa.133470	Cucumber (Gy14) v1	carcgyB0349
Carg23433	CmaCh05G011840	Cucurbita maxima (Rimu)	carcmaB0410
Carg23433	CmaCh12G011060	Cucurbita maxima (Rimu)	carcmaB0409
Carg23433	CmoCh05G012080	Cucurbita moschata (Rifu)	carcmoB0405
Carg23433	CmoCh12G011250	Cucurbita moschata (Rifu)	carcmoB0404
Carg23433	Cp4.1LG11g09820	Cucurbita pepo (Zucchini)	carcpeB0410
Carg23433	Cp4.1LG07g09220	Cucurbita pepo (Zucchini)	carcpeB0411
Carg23433	CsGy2G003310	Cucumber (Gy14) v2	carcgybB0310
Carg23433	MELO3C004360.2	Melon (DHL92) v3.6.1	carmedB0309
Carg23433	CsaV3_2G004340	Cucumber (Chinese Long) v3	carcucB0330
Carg23433	Bhi06G001499	Wax gourd	carwgoB0384

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg23433	Carg17581	Silver-seed gourd	carcarB325

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23433	Watermelon (97103) v2	carwmbB0306
Carg23433	Bottle gourd (USVL1VR-Ls)	carlsiB271