Carg17581 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17581
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	40S ribosomal protein S24
Location	Cucurbita_argyrosperma_scaffold_183 : 411099 .. 412800 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTTTTATCATCCCGACTCAGGTTAAGAGCTGCCGTTTCTCTGCGCCTTCGCCCTTCCAAGAGCTTCAAGCTTTCCATCCTCTTCGGGGCACATTCAGTCATGGCGGACAAGGCAGTCACTATCCGGACCAGGAAGTTCATGACCAACAGGCTCCTCTCCAGGAAGCAATTCGTAAGTTTCTCAGATCGCACACCTTCGTTCTTGCTTTCCGCATTCCTGTTCTTTGAGGCCTTGATGTTGTGTGATCCCGTGGCGTTTGATTCTTGTGTGGCGATGTTAACTTGTTTTTTTTTTTCGTTTTTGGTTTTTGAGTTTGGAGTTTGTTAATTCGTAGATTCTGGTGTTGTACTGAAGTGGATGACTTGCATTTGTTTGACGCTGTAAAGGGTTCTCTTATGTTTAATCGAAAACCAATGTCTTAAATGAATCTGAAGTTTTTCGTTTCTCTATTACTTGGAGCTTAGGGTATTTAGTGCTTGCCACTTTGACGACCGTGGTTGCTTTAGGGCTGGTGATTTTTGTTCCTTGGTAGCTCACAGACTCCTGTTTGTTTAATATTTTGATGGGGGTTGGAAGAGATTTTGAAGTCGTTTATAACCTGTTTGTCCCATGTTTATTTCAGGTCATTGATGTTCTTCACCCAGGCAGACCTAATGTCTCAAAGGTAAATCCATTTTCGATTCAATTTCCTTATTCTTCTTGGTTGAATTTATGTCATTTTACTTCAGTAATTGTCTTTCATATGTGCAAACTTCTTTAGAATACAACATGAATCTCATCGATTATTTCCATCGGGTACTTCTTCTTGTCTTGAACATTATAACTAATACTAATTTTTATACACTCGTTTCTTACTTCATGCTCCTTTTGGTAATTTTCGAAGTTTCATTGAAATGGTGACTGACATCTAAACTTTTCTGTAAAGCTTATGAAATTAAGGCCGTATTGTTCTGGCATTCATGACGCTTAATTCTTTTGCATTTTGGCATATTTTGCTCATCATGTGATGTGTTTCTATATCTCGCTCTAAAGGCTGAGCTAAAGGAGAAGTTGGGCAGAATCTACGACGTGAAAGACCCAAATGCCATCTTTGTTTTCAAGTTCAGAACTCACTTTGGTGGTGGAAAATCTACCGGGTTCGGTTTGATCTATGACTCTGTTGAGAATGCCAAGAAGTATGAGCCAAAGTACAGGCTGATCAGGGTAATTTACATTCTCCCTCTAAACCAAAATTCAATAATCAAACTGGACATTACTCAAACTCAACCGTTTTTCTCGTTTCAGAATGGACTCGACACCAAGGTAGAGAAGTCAAGAAAGCAAATGAAGGAAAGGAAGAACAGGGCCAAGAAAATCCGTGGAGTTAAGAAGGTAAGTAAAAACATTCATAGCTAGTCGACGAGATCTCGAATGATGAAACATTACTATTTACCACTGGTTGATGTCTTTTTAACAGACCAAGGCTTCAGATGCTGCCAAGGCAGGAAAGAAGAAATGAGGATGCTGGAGTTTTGTTCTTATCACCAAGGATCGTCTGCAGAATTGGGTTGCTTTCTTTTTAATAGTCTCTTTTAGTTTTCGTTTTATTACTCCTAAATGAAGTTATTATGTTAATCAGTGATTTGGTTGTTGGTGACTAGTGATATCAAAACTTGTTCAACATTTTTGACGTTACAGTTAATATATTTCCTTGTTTTTCC

mRNA sequence

TCTTTTTATCATCCCGACTCAGGTTAAGAGCTGCCGTTTCTCTGCGCCTTCGCCCTTCCAAGAGCTTCAAGCTTTCCATCCTCTTCGGGGCACATTCAGTCATGGCGGACAAGGCAGTCACTATCCGGACCAGGAAGTTCATGACCAACAGGCTCCTCTCCAGGAAGCAATTCGTCATTGATGTTCTTCACCCAGGCAGACCTAATGTCTCAAAGGCTGAGCTAAAGGAGAAGTTGGGCAGAATCTACGACGTGAAAGACCCAAATGCCATCTTTGTTTTCAAGTTCAGAACTCACTTTGGTGGTGGAAAATCTACCGGGTTCGGTTTGATCTATGACTCTGTTGAGAATGCCAAGAAGTATGAGCCAAAGTACAGGCTGATCAGGAATGGACTCGACACCAAGGTAGAGAAGTCAAGAAAGCAAATGAAGGAAAGGAAGAACAGGGCCAAGAAAATCCGTGGAGTTAAGAAGACCAAGGCTTCAGATGCTGCCAAGGCAGGAAAGAAGAAATGAGGATGCTGGAGTTTTGTTCTTATCACCAAGGATCGTCTGCAGAATTGGGTTGCTTTCTTTTTAATAGTCTCTTTTAGTTTTCGTTTTATTACTCCTAAATGAAGTTATTATGTTAATCAGTGATTTGGTTGTTGGTGACTAGTGATATCAAAACTTGTTCAACATTTTTGACGTTACAGTTAATATATTTCCTTGTTTTTCC

Coding sequence (CDS)

ATGGCGGACAAGGCAGTCACTATCCGGACCAGGAAGTTCATGACCAACAGGCTCCTCTCCAGGAAGCAATTCGTCATTGATGTTCTTCACCCAGGCAGACCTAATGTCTCAAAGGCTGAGCTAAAGGAGAAGTTGGGCAGAATCTACGACGTGAAAGACCCAAATGCCATCTTTGTTTTCAAGTTCAGAACTCACTTTGGTGGTGGAAAATCTACCGGGTTCGGTTTGATCTATGACTCTGTTGAGAATGCCAAGAAGTATGAGCCAAAGTACAGGCTGATCAGGAATGGACTCGACACCAAGGTAGAGAAGTCAAGAAAGCAAATGAAGGAAAGGAAGAACAGGGCCAAGAAAATCCGTGGAGTTAAGAAGACCAAGGCTTCAGATGCTGCCAAGGCAGGAAAGAAGAAATGA

Protein sequence

MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

Homology

[Close]

BLAST of Carg17581 vs. NCBI nr
Match: XP_004139219.1 (PREDICTED: 40S ribosomal protein S24-1 [Cucumis sativus] >KGN60830.1 hypothetical protein Csa_2G012120 [Cucumis sativus])

HSP 1 Score: 212.6 bits (540), Expect = 8.3e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 104

[Close]

BLAST of Carg17581 vs. NCBI nr
Match: XP_022937688.1 (40S ribosomal protein S24-1-like [Cucurbita moschata] >XP_022966001.1 40S ribosomal protein S24-1 [Cucurbita maxima] >XP_023536700.1 40S ribosomal protein S24-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 212.6 bits (540), Expect = 8.3e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 104

[Close]

BLAST of Carg17581 vs. NCBI nr
Match: XP_022999263.1 (40S ribosomal protein S24-1-like [Cucurbita maxima])

HSP 1 Score: 211.5 bits (537), Expect = 1.9e-51
Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPN+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 104

[Close]

BLAST of Carg17581 vs. NCBI nr
Match: XP_022143165.1 (40S ribosomal protein S24-1 [Momordica charantia])

HSP 1 Score: 210.3 bits (534), Expect = 4.1e-51
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKL RIYDVKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLSRIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 104

[Close]

BLAST of Carg17581 vs. NCBI nr
Match: XP_008455742.1 (PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo] >ADN33912.1 40S ribosomal protein s24 [Cucumis melo subsp. melo])

HSP 1 Score: 209.9 bits (533), Expect = 5.4e-51
Identity = 102/104 (98.08%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKL RIYDVKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 104

[Close]

BLAST of Carg17581 vs. TAIR10
Match: AT3G04920.1 (Ribosomal protein S24e family protein)

HSP 1 Score: 196.4 bits (498), Expect = 1.1e-50
Identity = 94/104 (90.38%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELKEKL R+Y+VKDPNAIFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDTK+EK
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEK 104

[Close]

BLAST of Carg17581 vs. TAIR10
Match: AT5G28060.1 (Ribosomal protein S24e family protein)

HSP 1 Score: 192.2 bits (487), Expect = 2.1e-49
Identity = 91/104 (87.50%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSKAELKEKL R+Y+VKDPNAIF F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDTK+EK
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEK 104

[Close]

BLAST of Carg17581 vs. Swiss-Prot
Match: sp|Q9SS17|RS241_ARATH (40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.0e-49
Identity = 94/104 (90.38%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELKEKL R+Y+VKDPNAIFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDTK+EK
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEK 104

[Close]

BLAST of Carg17581 vs. Swiss-Prot
Match: sp|Q8LC83|RS242_ARATH (40S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 3.8e-48
Identity = 91/104 (87.50%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSKAELKEKL R+Y+VKDPNAIF F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDTK+EK
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEK 104

[Close]

BLAST of Carg17581 vs. Swiss-Prot
Match: sp|Q75K27|RS24_DICDI (40S ribosomal protein S24 OS=Dictyostelium discoideum OX=44689 GN=rps24 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.7e-32
Identity = 66/101 (65.35%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           M   AV +RTRK +TNRLLSRKQFV++V+HPG+ NVSK +LK  + +++ V DP  IF+F
Sbjct: 1   MDKAAVVVRTRKVLTNRLLSRKQFVVEVVHPGKANVSKKDLKTTIAKLHKVADPETIFLF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTK 102
            F+T FGGGKSTGFGLIYD++E AKKYEPKYRL R GL TK
Sbjct: 61  GFKTDFGGGKSTGFGLIYDNLEIAKKYEPKYRLARAGLYTK 101

[Close]

BLAST of Carg17581 vs. Swiss-Prot
Match: sp|Q962Q6|RS24_SPOFR (40S ribosomal protein S24 OS=Spodoptera frugiperda OX=7108 GN=RpS24 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.9e-31
Identity = 65/101 (64.36%), Postives = 82/101 (81.19%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           M +   TIRTRKFMTNRLL+RKQ V DVLHPG+P VSK E++EKL ++Y V  P+ +FVF
Sbjct: 1   MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTK 102
            F+T+FGGGKSTGF LIYD+++ AKK+EPK+RL R+GL  K
Sbjct: 61  GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK 100

[Close]

BLAST of Carg17581 vs. Swiss-Prot
Match: sp|Q56JU9|RS24_BOVIN (40S ribosomal protein S24 OS=Bos taurus OX=9913 GN=RPS24 PE=2 SV=2)

HSP 1 Score: 135.6 bits (340), Expect = 4.2e-31
Identity = 66/96 (68.75%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 6   VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTH 65
           VTIRTRKFMTNRLL RKQ VIDVLHPG+  V K E++EKL ++Y    P+ IFVF FRTH
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRTH 64

Query: 66  FGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTK 102
           FGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K
Sbjct: 65  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEK 99

[Close]

BLAST of Carg17581 vs. TrEMBL
Match: tr|A0A0A0LFK1|A0A0A0LFK1_CUCSA (40S ribosomal protein S24 OS=Cucumis sativus OX=3659 GN=Csa_2G012120 PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 5.5e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 104

[Close]

BLAST of Carg17581 vs. TrEMBL
Match: tr|A0A1S3C1J8|A0A1S3C1J8_CUCME (40S ribosomal protein S24 OS=Cucumis melo OX=3656 GN=LOC103495842 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 3.6e-51
Identity = 102/104 (98.08%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKL RIYDVKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 104

[Close]

BLAST of Carg17581 vs. TrEMBL
Match: tr|E5GBS0|E5GBS0_CUCME (40S ribosomal protein S24 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 3.6e-51
Identity = 102/104 (98.08%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKL RIYDVKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 104

[Close]

BLAST of Carg17581 vs. TrEMBL
Match: tr|A0A1R3IDR1|A0A1R3IDR1_COCAP (40S ribosomal protein S24 OS=Corchorus capsularis OX=210143 GN=CCACVL1_12792 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.0e-50
Identity = 100/104 (96.15%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           M+DKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLGR+Y+VKDPNAIFVF
Sbjct: 1   MSDKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLGRMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 104

[Close]

BLAST of Carg17581 vs. TrEMBL
Match: tr|A0A1R3KSY2|A0A1R3KSY2_9ROSI (40S ribosomal protein S24 OS=Corchorus olitorius OX=93759 GN=COLO4_04733 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.0e-50
Identity = 100/104 (96.15%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           M+DKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLGR+Y+VKDPNAIFVF
Sbjct: 1   MSDKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLGRMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 104

The following BLAST results are available for this feature:

BLAST of Carg17581 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139219.1	8.3e-52	100.00	PREDICTED: 40S ribosomal protein S24-1 [Cucumis sativus] >KGN60830.1 hypothetica...	[more]
XP_022937688.1	8.3e-52	100.00	40S ribosomal protein S24-1-like [Cucurbita moschata] >XP_022966001.1 40S riboso...	[more]
XP_022999263.1	1.9e-51	99.04	40S ribosomal protein S24-1-like [Cucurbita maxima]	[more]
XP_022143165.1	4.1e-51	99.04	40S ribosomal protein S24-1 [Momordica charantia]	[more]
XP_008455742.1	5.4e-51	98.08	PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo] >ADN33912.1 40S ribosomal ...	[more]

BLAST of Carg17581 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G04920.1	1.1e-50	90.38	Ribosomal protein S24e family protein	[more]
AT5G28060.1	2.1e-49	87.50	Ribosomal protein S24e family protein	[more]

BLAST of Carg17581 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SS17\|RS241_ARATH	2.0e-49	90.38	40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1	[more]
sp\|Q8LC83\|RS242_ARATH	3.8e-48	87.50	40S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2	[more]
sp\|Q75K27\|RS24_DICDI	1.7e-32	65.35	40S ribosomal protein S24 OS=Dictyostelium discoideum OX=44689 GN=rps24 PE=3 SV=...	[more]
sp\|Q962Q6\|RS24_SPOFR	1.9e-31	64.36	40S ribosomal protein S24 OS=Spodoptera frugiperda OX=7108 GN=RpS24 PE=2 SV=1	[more]
sp\|Q56JU9\|RS24_BOVIN	4.2e-31	68.75	40S ribosomal protein S24 OS=Bos taurus OX=9913 GN=RPS24 PE=2 SV=2	[more]

BLAST of Carg17581 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LFK1\|A0A0A0LFK1_CUCSA	5.5e-52	100.00	40S ribosomal protein S24 OS=Cucumis sativus OX=3659 GN=Csa_2G012120 PE=3 SV=1	[more]
tr\|A0A1S3C1J8\|A0A1S3C1J8_CUCME	3.6e-51	98.08	40S ribosomal protein S24 OS=Cucumis melo OX=3656 GN=LOC103495842 PE=3 SV=1	[more]
tr\|E5GBS0\|E5GBS0_CUCME	3.6e-51	98.08	40S ribosomal protein S24 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
tr\|A0A1R3IDR1\|A0A1R3IDR1_COCAP	1.0e-50	96.15	40S ribosomal protein S24 OS=Corchorus capsularis OX=210143 GN=CCACVL1_12792 PE=...	[more]
tr\|A0A1R3KSY2\|A0A1R3KSY2_9ROSI	1.0e-50	96.15	40S ribosomal protein S24 OS=Corchorus olitorius OX=93759 GN=COLO4_04733 PE=3 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR012678	Ribosomal_L23/L15e_core_dom_sf
IPR018098	Ribosomal_S24e_CS
IPR001976	Ribosomal_S24e

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17581-RA	Carg17581-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001976	Ribosomal protein S24e	PFAM	PF01282	Ribosomal_S24e	coord: 25..103 e-value: 2.0E-36 score: 123.7
IPR001976	Ribosomal protein S24e	PANTHER	PTHR10496	40S RIBOSOMAL PROTEIN S24	coord: 3..132
IPR001976	Ribosomal protein S24e	PRODOM	PD006052		coord: 14..86 e-value: 2.0E-33 score: 351.0
IPR001976	Ribosomal protein S24e	HAMAP	MF_00545	Ribosomal_S24e	coord: 4..106 score: 19.459
None	No IPR available	GENE3D	G3DSA:3.30.70.3370		coord: 1..134 e-value: 9.3E-63 score: 211.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..137
None	No IPR available	PANTHER	PTHR10496:SF5	SUBFAMILY NOT NAMED	coord: 3..132
IPR018098	Ribosomal S24e conserved site	PROSITE	PS00529	RIBOSOMAL_S24E	coord: 66..88
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	SSF54189	Ribosomal proteins S24e, L23 and L15e	coord: 6..108

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17581	Cla019826	Watermelon (97103) v1	carwmB0714
Carg17581	Csa2G012120	Cucumber (Chinese Long) v2	carcuB0735
Carg17581	MELO3C004360	Melon (DHL92) v3.5.1	carmeB0711
Carg17581	ClCG02G016390	Watermelon (Charleston Gray)	carwcgB0692
Carg17581	CSPI02G03200	Wild cucumber (PI 183967)	carcpiB0751
Carg17581	Cucsa.133470	Cucumber (Gy14) v1	carcgyB0804
Carg17581	CmaCh05G011840	Cucurbita maxima (Rimu)	carcmaB1001
Carg17581	CmaCh12G011060	Cucurbita maxima (Rimu)	carcmaB1000
Carg17581	CmoCh05G012080	Cucurbita moschata (Rifu)	carcmoB0974
Carg17581	CmoCh12G011250	Cucurbita moschata (Rifu)	carcmoB0973
Carg17581	Cp4.1LG11g09820	Cucurbita pepo (Zucchini)	carcpeB1005
Carg17581	Cp4.1LG07g09220	Cucurbita pepo (Zucchini)	carcpeB1006
Carg17581	CsGy2G003310	Cucumber (Gy14) v2	carcgybB0713
Carg17581	MELO3C004360.2	Melon (DHL92) v3.6.1	carmedB0724
Carg17581	CsaV3_2G004340	Cucumber (Chinese Long) v3	carcucB0754
Carg17581	Bhi06G001499	Wax gourd	carwgoB0841

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg17581	Carg23433	Silver-seed gourd	carcarB325

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17581	Bottle gourd (USVL1VR-Ls)	carlsiB654
Carg17581	Watermelon (97103) v2	carwmbB0746