Cucsa.126240 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.126240
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold01017 : 183392 .. 183881 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGAGTTGAGATTATTTTTGGTGGCAAAAGAAAAAAAAAaTGAGCTATTTGAGGAGAGCTTGGATGGGTGCGGCTAGTGTGGGTGTGATGGAAAGTAGCTACGCCAGTAATGATCAGTACTTCGTTTTTCAGTCCAAGCTCCAGCAGTTTCAGCAGAATGGCGAAGGCAAGGCCGCTCAGGAACTTGGCGCCAGAAGTAGCTTTCACAAGTATGGAAAAGGTGGAGAAGGAGGAAGAAGAGGAAAGGAGATTCATAGGGCTGAAGATTCTCTTCATAAAGTCATGTACTTGAATTGTTGGACACAAAGCTAGCTGAATAATTACCCACTTGATCTTCTGTTTATGCCTAATTAAACAACTACAGTATTAATTCAATTAATCTTCTCTATATATCCTTTTTTTTTttCTCTTTTTGTATATTATATTTCTGTTTTGATATTTCAGTCTTAGGTTGTATAATACAAATTACAGTGAAAAGTTATTTCAACA

mRNA sequence

GTTGAGTTGAGATTATTTTTGGTGGCAAAAGAAAAAAAAAATGAGCTATTTGAGGAGAGCTTGGATGGGTGCGGCTAGTGTGGGTGTGATGGAAAGTAGCTACGCCAGTAATGATCAGTACTTCGTTTTTCAGTCCAAGCTCCAGCAGTTTCAGCAGAATGGCGAAGGCAAGGCCGCTCAGGAACTTGGCGCCAGAAGTAGCTTTCACAAGTATGGAAAAGGTGGAGAAGGAGGAAGAAGAGGAAAGGAGATTCATAGGGCTGAAGATTCTCTTCATAAAGTCATGTACTTGAATTGTTGGACACAAAGCTAGCTGAATAATTACCCACTTGATCTTCTGTTTATGCCTAATTAAACAACTACAGTATTAATTCAATTAATCTTCTCTATATATCCTTTTTTTTTTTCTCTTTTTGTATATTATATTTCTGTTTTGATATTTCAGTCTTAGGTTGTATAATACAAATTACAGTGAAAAGTTATTTCAACA

Coding sequence (CDS)

aTGAGCTATTTGAGGAGAGCTTGGATGGGTGCGGCTAGTGTGGGTGTGATGGAAAGTAGCTACGCCAGTAATGATCAGTACTTCGTTTTTCAGTCCAAGCTCCAGCAGTTTCAGCAGAATGGCGAAGGCAAGGCCGCTCAGGAACTTGGCGCCAGAAGTAGCTTTCACAAGTATGGAAAAGGTGGAGAAGGAGGAAGAAGAGGAAAGGAGATTCATAGGGCTGAAGATTCTCTTCATAAAGTCATGTACTTGAATTGTTGGACACAAAGCTAG

Protein sequence

MSYLRRAWMGAASVGVMESSYASNDQYFVFQSKLQQFQQNGEGKAAQELGARSSFHKYGKGGEGGRRGKEIHRAEDSLHKVMYLNCWTQS*
Homology
[Close]
BLAST of Cucsa.126240 vs. TrEMBL
Match: A0A0A0LS84_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G071860 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 4.0e-45
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 1  MSYLRRAWMGAASVGVMESSYASNDQYFVFQSKLQQFQQNGEGKAAQELGARSSFHKYGK 60
          MSYLRRAWMGAASVGVMESSYASNDQYFVFQSKLQQFQQNGEGKAAQELGARSSFHKYGK
Sbjct: 1  MSYLRRAWMGAASVGVMESSYASNDQYFVFQSKLQQFQQNGEGKAAQELGARSSFHKYGK 60

Query: 61 GGEGGRRGKEIHRAEDSLHKVMYLNCWTQS 91
          GGEGGRRGKEIHRAEDSLHKVMYLNCWTQS
Sbjct: 61 GGEGGRRGKEIHRAEDSLHKVMYLNCWTQS 90

[Close]
BLAST of Cucsa.126240 vs. NCBI nr
Match: gi|700209527|gb|KGN64623.1| (hypothetical protein Csa_1G071860 [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 5.7e-45
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 1  MSYLRRAWMGAASVGVMESSYASNDQYFVFQSKLQQFQQNGEGKAAQELGARSSFHKYGK 60
          MSYLRRAWMGAASVGVMESSYASNDQYFVFQSKLQQFQQNGEGKAAQELGARSSFHKYGK
Sbjct: 1  MSYLRRAWMGAASVGVMESSYASNDQYFVFQSKLQQFQQNGEGKAAQELGARSSFHKYGK 60

Query: 61 GGEGGRRGKEIHRAEDSLHKVMYLNCWTQS 91
          GGEGGRRGKEIHRAEDSLHKVMYLNCWTQS
Sbjct: 61 GGEGGRRGKEIHRAEDSLHKVMYLNCWTQS 90

The following BLAST results are available for this feature:
BLAST of Cucsa.126240 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LS84_CUCSA4.0e-45100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G071860 PE=4 SV=1[more]
BLAST of Cucsa.126240 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209527|gb|KGN64623.1|5.7e-45100.00hypothetical protein Csa_1G071860 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR022251DUF3774_wound-induced
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.126240.1Cucsa.126240.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022251Protein of unknown function wound-inducedPFAMPF12609DUF3774coord: 11..89
score: 8.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.126240Cla019453Watermelon (97103) v1cgywmB205
Cucsa.126240Csa1G071860Cucumber (Chinese Long) v2cgycuB170
Cucsa.126240ClCG03G005490Watermelon (Charleston Gray)cgywcgB203
Cucsa.126240CSPI01G11590Wild cucumber (PI 183967)cgycpiB172
Cucsa.126240CmaCh13G006810Cucurbita maxima (Rimu)cgycmaB0336
Cucsa.126240CmoCh13G007020Cucurbita moschata (Rifu)cgycmoB0330
Cucsa.126240Lsi02G007000Bottle gourd (USVL1VR-Ls)cgylsiB194
Cucsa.126240Cla97C03G056790Watermelon (97103) v2cgywmbB200
Cucsa.126240Bhi08G001550Wax gourdcgywgoB232
Cucsa.126240Carg21468Silver-seed gourdcarcgyB1068
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.126240Cucurbita pepo (Zucchini)cgycpeB0324
Cucsa.126240Cucurbita pepo (Zucchini)cgycpeB0326
Cucsa.126240Cucurbita pepo (Zucchini)cgycpeB0328
Cucsa.126240Cucurbita pepo (Zucchini)cgycpeB0329
Cucsa.126240Cucurbita pepo (Zucchini)cgycpeB0330
Cucsa.126240Bottle gourd (USVL1VR-Ls)cgylsiB193
Cucsa.126240Bottle gourd (USVL1VR-Ls)cgylsiB196
Cucsa.126240Melon (DHL92) v3.6.1cgymedB197
Cucsa.126240Melon (DHL92) v3.6.1cgymedB198
Cucsa.126240Melon (DHL92) v3.6.1cgymedB199
Cucsa.126240Silver-seed gourdcarcgyB0182
Cucsa.126240Silver-seed gourdcarcgyB0716
Cucsa.126240Silver-seed gourdcarcgyB0809
Cucsa.126240Silver-seed gourdcarcgyB1022
Cucsa.126240Cucumber (Chinese Long) v3cgycucB174
Cucsa.126240Cucumber (Chinese Long) v3cgycucB175
Cucsa.126240Cucumber (Chinese Long) v3cgycucB176
Cucsa.126240Cucumber (Chinese Long) v3cgycucB177
Cucsa.126240Watermelon (97103) v2cgywmbB197
Cucsa.126240Watermelon (97103) v2cgywmbB198
Cucsa.126240Wax gourdcgywgoB230
Cucsa.126240Cucumber (Gy14) v1cgycgyB004
Cucsa.126240Cucumber (Gy14) v1cgycgyB023
Cucsa.126240Cucumber (Gy14) v1cgycgyB076
Cucsa.126240Cucurbita maxima (Rimu)cgycmaB0335
Cucsa.126240Cucurbita maxima (Rimu)cgycmaB0334
Cucsa.126240Cucurbita maxima (Rimu)cgycmaB0337
Cucsa.126240Cucurbita maxima (Rimu)cgycmaB0338
Cucsa.126240Cucurbita maxima (Rimu)cgycmaB0340
Cucsa.126240Cucurbita maxima (Rimu)cgycmaB0341
Cucsa.126240Cucurbita moschata (Rifu)cgycmoB0329
Cucsa.126240Cucurbita moschata (Rifu)cgycmoB0331
Cucsa.126240Cucurbita moschata (Rifu)cgycmoB0332
Cucsa.126240Cucurbita moschata (Rifu)cgycmoB0333
Cucsa.126240Wild cucumber (PI 183967)cgycpiB173
Cucsa.126240Wild cucumber (PI 183967)cgycpiB174
Cucsa.126240Wild cucumber (PI 183967)cgycpiB175
Cucsa.126240Wild cucumber (PI 183967)cgycpiB176
Cucsa.126240Cucumber (Chinese Long) v2cgycuB171
Cucsa.126240Cucumber (Chinese Long) v2cgycuB172
Cucsa.126240Cucumber (Chinese Long) v2cgycuB173
Cucsa.126240Melon (DHL92) v3.5.1cgymeB198
Cucsa.126240Melon (DHL92) v3.5.1cgymeB199
Cucsa.126240Melon (DHL92) v3.5.1cgymeB200
Cucsa.126240Melon (DHL92) v3.5.1cgymeB201
Cucsa.126240Watermelon (Charleston Gray)cgywcgB202
Cucsa.126240Watermelon (97103) v1cgywmB208