Cla97C03G056790 (gene) Watermelon (97103) v2

Overview
NameCla97C03G056790
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionWound-responsive family protein
LocationCla97Chr03 : 5449252 .. 5449500 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCTATTTGAGGCGAGCTTGGATGGGTGCGGCGGGTGTGAGTGTGCTTGAAACTGCCCACGCCAATGATCAATTCTCCAAATGGAATTCTTCAGAGACTGTTTTTCAGTCGAAGCTGCGGCGGTTTCAGAATGAGGAGACGGCGGCGGAAGTTGGCGGTGATGGAAAAGAAGATAGGGGAAAGGAGATGAAGACTGAAGATTCTCTTCATAAAGTCATATACTTGAATTGTTGGACACAAAGCTGA

mRNA sequence

ATGAGCTATTTGAGGCGAGCTTGGATGGGTGCGGCGGGTGTGAGTGTGCTTGAAACTGCCCACGCCAATGATCAATTCTCCAAATGGAATTCTTCAGAGACTGTTTTTCAGTCGAAGCTGCGGCGGTTTCAGAATGAGGAGACGGCGGCGGAAGTTGGCGGTGATGGAAAAGAAGATAGGGGAAAGGAGATGAAGACTGAAGATTCTCTTCATAAAGTCATATACTTGAATTGTTGGACACAAAGCTGA

Coding sequence (CDS)

ATGAGCTATTTGAGGCGAGCTTGGATGGGTGCGGCGGGTGTGAGTGTGCTTGAAACTGCCCACGCCAATGATCAATTCTCCAAATGGAATTCTTCAGAGACTGTTTTTCAGTCGAAGCTGCGGCGGTTTCAGAATGAGGAGACGGCGGCGGAAGTTGGCGGTGATGGAAAAGAAGATAGGGGAAAGGAGATGAAGACTGAAGATTCTCTTCATAAAGTCATATACTTGAATTGTTGGACACAAAGCTGA

Protein sequence

MSYLRRAWMGAAGVSVLETAHANDQFSKWNSSETVFQSKLRRFQNEETAAEVGGDGKEDRGKEMKTEDSLHKVIYLNCWTQS
Homology
[Close]
BLAST of Cla97C03G056790 vs. NCBI nr
Match: KGN64623.1 (hypothetical protein Csa_1G071860 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 3.0e-12
Identity = 52/97 (53.61%), Postives = 64/97 (65.98%), Query Frame = 0 

Query: 1  MSYLRRAWMGAAGVSVLETAHA-NDQFSKWNSSETVFQSKLRRFQNE---ETAAEVG--- 60
          MSYLRRAWMGAA V V+E+++A NDQ+        VFQSKL++FQ     + A E+G   
Sbjct: 1  MSYLRRAWMGAASVGVMESSYASNDQY-------FVFQSKLQQFQQNGEGKAAQELGARS 60

Query: 61 -----GDGKED--RGKEM-KTEDSLHKVIYLNCWTQS 83
               G G E   RGKE+ + EDSLHKV+YLNCWTQS
Sbjct: 61 SFHKYGKGGEGGRRGKEIHRAEDSLHKVMYLNCWTQS 90

[Close]
BLAST of Cla97C03G056790 vs. NCBI nr
Match: EOY28437.1 (Uncharacterized protein TCM_030005 [Theobroma cacao])

HSP 1 Score: 52.8 bits (125), Expect = 6.6e-04
Identity = 34/86 (39.53%), Postives = 46/86 (53.49%), Query Frame = 0 

Query: 1  MSYLRRAWMGAAGVSVLETAHANDQFSKWNSSETVFQSKLRRFQNEETAAE----VGGDG 60
          MSYL R  M A   SV       D  SKWNS      +  RR+ +  ++++      G  
Sbjct: 1  MSYLSRVCMAA---SVAAVEGHRDCSSKWNSGLRPINASKRRYASTASSSDDRLRARGKP 60

Query: 61 KEDRGKEMKTEDSLHKVIYLNCWTQS 83
          KED G +  +E+SL +V+YLNCWTQS
Sbjct: 61 KEDNGNQ--SEESLQRVMYLNCWTQS 81

[Close]
BLAST of Cla97C03G056790 vs. TrEMBL
Match: tr|A0A0A0LS84|A0A0A0LS84_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G071860 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.0e-12
Identity = 52/97 (53.61%), Postives = 64/97 (65.98%), Query Frame = 0 

Query: 1  MSYLRRAWMGAAGVSVLETAHA-NDQFSKWNSSETVFQSKLRRFQNE---ETAAEVG--- 60
          MSYLRRAWMGAA V V+E+++A NDQ+        VFQSKL++FQ     + A E+G   
Sbjct: 1  MSYLRRAWMGAASVGVMESSYASNDQY-------FVFQSKLQQFQQNGEGKAAQELGARS 60

Query: 61 -----GDGKED--RGKEM-KTEDSLHKVIYLNCWTQS 83
               G G E   RGKE+ + EDSLHKV+YLNCWTQS
Sbjct: 61 SFHKYGKGGEGGRRGKEIHRAEDSLHKVMYLNCWTQS 90

[Close]
BLAST of Cla97C03G056790 vs. TrEMBL
Match: tr|A0A061GGZ2|A0A061GGZ2_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030005 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.4e-04
Identity = 34/86 (39.53%), Postives = 46/86 (53.49%), Query Frame = 0 

Query: 1  MSYLRRAWMGAAGVSVLETAHANDQFSKWNSSETVFQSKLRRFQNEETAAE----VGGDG 60
          MSYL R  M A   SV       D  SKWNS      +  RR+ +  ++++      G  
Sbjct: 1  MSYLSRVCMAA---SVAAVEGHRDCSSKWNSGLRPINASKRRYASTASSSDDRLRARGKP 60

Query: 61 KEDRGKEMKTEDSLHKVIYLNCWTQS 83
          KED G +  +E+SL +V+YLNCWTQS
Sbjct: 61 KEDNGNQ--SEESLQRVMYLNCWTQS 81

[Close]
BLAST of Cla97C03G056790 vs. TAIR10
Match: AT4G28240.1 (Wound-responsive family protein)

HSP 1 Score: 42.7 bits (99), Expect = 1.2e-04
Identity = 28/85 (32.94%), Postives = 43/85 (50.59%), Query Frame = 0 

Query: 1  MSYLRRAWMGAAGVSVLETAHANDQFSKWNSSETVFQSKLRRFQNEETAAEVGGDG--KE 60
          MSYL + WM A+ V+V   A    +     +S    Q +L        AA++ GD    E
Sbjct: 1  MSYLNKVWMAASFVAVQGNADHGVKLKSGLTSAHRLQRRLSSDLRPLAAADLTGDSLPSE 60

Query: 61 DRGKEMKT--EDSLHKVIYLNCWTQ 82
          +R +   +  ++SL +V+YLNCW Q
Sbjct: 61 ERRRTSSSTPDESLRQVMYLNCWAQ 85

The following BLAST results are available for this feature:
BLAST of Cla97C03G056790 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64623.13.0e-1253.61hypothetical protein Csa_1G071860 [Cucumis sativus][more]
EOY28437.16.6e-0439.53Uncharacterized protein TCM_030005 [Theobroma cacao][more]
BLAST of Cla97C03G056790 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LS84|A0A0A0LS84_CUCSA2.0e-1253.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G071860 PE=4 SV=1[more]
tr|A0A061GGZ2|A0A061GGZ2_THECC4.4e-0439.53Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030005 PE=4 SV=1[more]
BLAST of Cla97C03G056790 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C03G056790 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G28240.11.2e-0432.94Wound-responsive family protein[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR022251DUF3774_wound-induced
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C03G056790.1Cla97C03G056790.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022251Protein of unknown function wound-inducedPFAMPF12609DUF3774coord: 19..81
e-value: 7.8E-8
score: 33.1
IPR022251Protein of unknown function wound-inducedPANTHERPTHR33090FAMILY NOT NAMEDcoord: 1..82
NoneNo IPR availablePANTHERPTHR33090:SF1SUBFAMILY NOT NAMEDcoord: 1..82

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C03G056790Cla019453Watermelon (97103) v1wmwmbB124
Cla97C03G056790Csa1G071860Cucumber (Chinese Long) v2cuwmbB032
Cla97C03G056790ClCG03G005490Watermelon (Charleston Gray)wcgwmbB186
Cla97C03G056790Cucsa.126240Cucumber (Gy14) v1cgywmbB200
Cla97C03G056790CmaCh13G006810Cucurbita maxima (Rimu)cmawmbB228
Cla97C03G056790Lsi02G007000Bottle gourd (USVL1VR-Ls)lsiwmbB176
Cla97C03G056790Carg21468Silver-seed gourdcarwmbB0999
Cla97C03G056790Bhi08G001550Wax gourdwgowmbB474
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C03G056790Watermelon (97103) v2wmbwmbB013
Cla97C03G056790Watermelon (97103) v2wmbwmbB050
Cla97C03G056790Watermelon (97103) v2wmbwmbB096
Cla97C03G056790Silver-seed gourdcarwmbB0157
Cla97C03G056790Silver-seed gourdcarwmbB0672
Cla97C03G056790Silver-seed gourdcarwmbB0947
Cla97C03G056790Silver-seed gourdcarwmbB0976
Cla97C03G056790Cucumber (Gy14) v2cgybwmbB032
Cla97C03G056790Cucumber (Gy14) v2cgybwmbB192
Cla97C03G056790Cucumber (Gy14) v2cgybwmbB194
Cla97C03G056790Cucumber (Gy14) v2cgybwmbB426
Cla97C03G056790Cucumber (Gy14) v1cgywmbB023
Cla97C03G056790Cucumber (Gy14) v1cgywmbB071
Cla97C03G056790Cucumber (Gy14) v1cgywmbB251
Cla97C03G056790Cucurbita maxima (Rimu)cmawmbB025
Cla97C03G056790Cucurbita maxima (Rimu)cmawmbB343
Cla97C03G056790Cucurbita maxima (Rimu)cmawmbB413
Cla97C03G056790Cucurbita maxima (Rimu)cmawmbB463
Cla97C03G056790Cucurbita maxima (Rimu)cmawmbB533
Cla97C03G056790Cucurbita maxima (Rimu)cmawmbB683
Cla97C03G056790Cucurbita maxima (Rimu)cmawmbB888
Cla97C03G056790Cucurbita moschata (Rifu)cmowmbB013
Cla97C03G056790Cucurbita moschata (Rifu)cmowmbB212
Cla97C03G056790Cucurbita moschata (Rifu)cmowmbB327
Cla97C03G056790Cucurbita moschata (Rifu)cmowmbB394
Cla97C03G056790Cucurbita moschata (Rifu)cmowmbB445
Cla97C03G056790Cucurbita moschata (Rifu)cmowmbB513
Cla97C03G056790Cucurbita moschata (Rifu)cmowmbB656
Cla97C03G056790Cucurbita moschata (Rifu)cmowmbB858
Cla97C03G056790Wild cucumber (PI 183967)cpiwmbB032
Cla97C03G056790Wild cucumber (PI 183967)cpiwmbB205
Cla97C03G056790Wild cucumber (PI 183967)cpiwmbB562
Cla97C03G056790Wild cucumber (PI 183967)cpiwmbB473
Cla97C03G056790Cucumber (Chinese Long) v3cucwmbB030
Cla97C03G056790Cucumber (Chinese Long) v3cucwmbB203
Cla97C03G056790Cucumber (Chinese Long) v3cucwmbB467
Cla97C03G056790Cucumber (Chinese Long) v3cucwmbB559
Cla97C03G056790Cucumber (Chinese Long) v2cuwmbB200
Cla97C03G056790Cucumber (Chinese Long) v2cuwmbB449
Cla97C03G056790Cucumber (Chinese Long) v2cuwmbB536
Cla97C03G056790Bottle gourd (USVL1VR-Ls)lsiwmbB092
Cla97C03G056790Bottle gourd (USVL1VR-Ls)lsiwmbB131
Cla97C03G056790Bottle gourd (USVL1VR-Ls)lsiwmbB278
Cla97C03G056790Bottle gourd (USVL1VR-Ls)lsiwmbB328
Cla97C03G056790Melon (DHL92) v3.6.1medwmbB145
Cla97C03G056790Melon (DHL92) v3.6.1medwmbB177
Cla97C03G056790Melon (DHL92) v3.6.1medwmbB422
Cla97C03G056790Melon (DHL92) v3.6.1medwmbB524
Cla97C03G056790Melon (DHL92) v3.5.1mewmbB156
Cla97C03G056790Melon (DHL92) v3.5.1mewmbB191
Cla97C03G056790Melon (DHL92) v3.5.1mewmbB433
Cla97C03G056790Melon (DHL92) v3.5.1mewmbB531
Cla97C03G056790Watermelon (Charleston Gray)wcgwmbB103
Cla97C03G056790Watermelon (Charleston Gray)wcgwmbB155
Cla97C03G056790Watermelon (97103) v1wmwmbB260
Cla97C03G056790Watermelon (97103) v1wmwmbB336
Cla97C03G056790Wax gourdwgowmbB421