Bhi08G001550 (gene) Wax gourd

Overview
NameBhi08G001550
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionUnknown protein
Locationchr8 : 54694811 .. 54695439 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTCCTATCATGAAAGAGAAGTCTTTTTGTCTCTTTTAGAATAGGTCAGCTGGAAAAAAACAGAATTCCCCTTATCCACAATTTTAACAAGTTGAAGCTGTGTGACTCAGAGAGAGATCAGTCGTGGATTTTTGGCAAAAGTAAGTAAAGGAAAATGAGGCGAGCTTGGATGGGTGCGGCCAGTGTGGGTATAGTGGAAAGTGGTCAATTCGATCACTTCTCCAAATGGAAGTCTGAGACTGTTCTTCAGTCGAAGAAGCTGCAGCAGTTTCAGAATGAGGACACGGTGGCTCAGGAACTTGGTGCCAACACCTCTAGTAATGGAAGAGATGGGCAAAACAACATTAAGGCTGAAGATTCTCTTCATAAAGTTATGTACTTGAATTGTTGGATACACAGCTAGTAGGGTTTTGCTCTTTTCTTTTCTCTTATAAATACCAGAATTCTGTATGTCTTCAATTTTCAGCTCTCAGTAATGTAAGGAAACACCAAACACGGAAATGCATGCTTGCCACTCAGCGACGACTTCACACCGCTTGATGACATTGGATAATTCACACTTATTTTTTTCTTTTTTGTATCATATTCCTCTTTTGATATTTTAGTCTTACGTTGTATTATACAAATTA

mRNA sequence

GTTCCTATCATGAAAGAGAAGTCTTTTTGTCTCTTTTAGAATAGGTCAGCTGGAAAAAAACAGAATTCCCCTTATCCACAATTTTAACAAGTTGAAGCTGTGTGACTCAGAGAGAGATCAGTCGTGGATTTTTGGCAAAAGTAAGTAAAGGAAAATGAGGCGAGCTTGGATGGGTGCGGCCAGTGTGGGTATAGTGGAAAGTGGTCAATTCGATCACTTCTCCAAATGGAAGTCTGAGACTGTTCTTCAGTCGAAGAAGCTGCAGCAGTTTCAGAATGAGGACACGGTGGCTCAGGAACTTGGTGCCAACACCTCTAGTAATGGAAGAGATGGGCAAAACAACATTAAGGCTGAAGATTCTCTTCATAAAGTTATGTACTTGAATTGTTGGATACACAGCTAGTAGGGTTTTGCTCTTTTCTTTTCTCTTATAAATACCAGAATTCTGTATGTCTTCAATTTTCAGCTCTCAGTAATGTAAGGAAACACCAAACACGGAAATGCATGCTTGCCACTCAGCGACGACTTCACACCGCTTGATGACATTGGATAATTCACACTTATTTTTTTCTTTTTTGTATCATATTCCTCTTTTGATATTTTAGTCTTACGTTGTATTATACAAATTA

Coding sequence (CDS)

ATGAGGCGAGCTTGGATGGGTGCGGCCAGTGTGGGTATAGTGGAAAGTGGTCAATTCGATCACTTCTCCAAATGGAAGTCTGAGACTGTTCTTCAGTCGAAGAAGCTGCAGCAGTTTCAGAATGAGGACACGGTGGCTCAGGAACTTGGTGCCAACACCTCTAGTAATGGAAGAGATGGGCAAAACAACATTAAGGCTGAAGATTCTCTTCATAAAGTTATGTACTTGAATTGTTGGATACACAGCTAG

Protein sequence

MRRAWMGAASVGIVESGQFDHFSKWKSETVLQSKKLQQFQNEDTVAQELGANTSSNGRDGQNNIKAEDSLHKVMYLNCWIHS
Homology
[Close]
BLAST of Bhi08G001550 vs. TrEMBL
Match: tr|A0A0A0LS84|A0A0A0LS84_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G071860 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-10
Identity = 48/92 (52.17%), Postives = 56/92 (60.87%), Query Frame = 0 

Query: 1  MRRAWMGAASVGIVESGQFDHFSKWKSETVLQSKKLQQFQ--NEDTVAQELGANTS---- 60
          +RRAWMGAASVG++ES     ++      V QS KLQQFQ   E   AQELGA +S    
Sbjct: 4  LRRAWMGAASVGVMESS----YASNDQYFVFQS-KLQQFQQNGEGKAAQELGARSSFHKY 63

Query: 61 ----SNGRDGQNNIKAEDSLHKVMYLNCWIHS 83
                GR G+   +AEDSLHKVMYLNCW  S
Sbjct: 64 GKGGEGGRRGKEIHRAEDSLHKVMYLNCWTQS 90

[Close]
BLAST of Bhi08G001550 vs. NCBI nr
Match: KGN64623.1 (hypothetical protein Csa_1G071860 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 3.6e-10
Identity = 48/92 (52.17%), Postives = 56/92 (60.87%), Query Frame = 0 

Query: 1  MRRAWMGAASVGIVESGQFDHFSKWKSETVLQSKKLQQFQ--NEDTVAQELGANTS---- 60
          +RRAWMGAASVG++ES     ++      V QS KLQQFQ   E   AQELGA +S    
Sbjct: 4  LRRAWMGAASVGVMESS----YASNDQYFVFQS-KLQQFQQNGEGKAAQELGARSSFHKY 63

Query: 61 ----SNGRDGQNNIKAEDSLHKVMYLNCWIHS 83
                GR G+   +AEDSLHKVMYLNCW  S
Sbjct: 64 GKGGEGGRRGKEIHRAEDSLHKVMYLNCWTQS 90

The following BLAST results are available for this feature:
BLAST of Bhi08G001550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi08G001550 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi08G001550 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LS84|A0A0A0LS84_CUCSA2.4e-1052.17Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G071860 PE=4 SV=1[more]
BLAST of Bhi08G001550 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64623.13.6e-1052.17hypothetical protein Csa_1G071860 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR022251DUF3774_wound-induced
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi08M001550Bhi08M001550mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022251Protein of unknown function wound-inducedPFAMPF12609DUF3774coord: 8..79
e-value: 6.1E-10
score: 39.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Bhi08G001550Csa1G071860Cucumber (Chinese Long) v2cuwgoB035
Bhi08G001550ClCG03G005490Watermelon (Charleston Gray)wcgwgoB344
Bhi08G001550CSPI01G11590Wild cucumber (PI 183967)cpiwgoB035
Bhi08G001550Cucsa.126240Cucumber (Gy14) v1cgywgoB232
Bhi08G001550CmaCh13G006810Cucurbita maxima (Rimu)cmawgoB0269
Bhi08G001550Lsi02G007000Bottle gourd (USVL1VR-Ls)lsiwgoB244
Bhi08G001550Cp4.1LG20g04060Cucurbita pepo (Zucchini)cpewgoB0637
Bhi08G001550Carg21468Silver-seed gourdcarwgoB1099
Bhi08G001550Cla019453Watermelon (97103) v1wgowmB475
Bhi08G001550Cla97C03G056790Watermelon (97103) v2wgowmbB474
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi08G001550Wax gourdwgowgoB112
Bhi08G001550Cucumber (Gy14) v1cgywgoB028
Bhi08G001550Cucumber (Gy14) v2cgybwgoB033
Bhi08G001550Cucumber (Gy14) v2cgybwgoB323
Bhi08G001550Cucurbita maxima (Rimu)cmawgoB0522
Bhi08G001550Cucurbita maxima (Rimu)cmawgoB0809
Bhi08G001550Cucurbita maxima (Rimu)cmawgoB1081
Bhi08G001550Cucurbita moschata (Rifu)cmowgoB0019
Bhi08G001550Cucurbita moschata (Rifu)cmowgoB0261
Bhi08G001550Cucurbita moschata (Rifu)cmowgoB0520
Bhi08G001550Cucurbita moschata (Rifu)cmowgoB1075
Bhi08G001550Cucurbita pepo (Zucchini)cpewgoB0047
Bhi08G001550Cucurbita pepo (Zucchini)cpewgoB0108
Bhi08G001550Wild cucumber (PI 183967)cpiwgoB642
Bhi08G001550Cucumber (Chinese Long) v3cucwgoB038
Bhi08G001550Cucumber (Chinese Long) v3cucwgoB656
Bhi08G001550Bottle gourd (USVL1VR-Ls)lsiwgoB194
Bhi08G001550Bottle gourd (USVL1VR-Ls)lsiwgoB378
Bhi08G001550Melon (DHL92) v3.6.1medwgoB181
Bhi08G001550Melon (DHL92) v3.6.1medwgoB674
Bhi08G001550Melon (DHL92) v3.5.1mewgoB179
Bhi08G001550Melon (DHL92) v3.5.1mewgoB666
Bhi08G001550Watermelon (Charleston Gray)wcgwgoB237
Bhi08G001550Watermelon (97103) v2wgowmbB455
Bhi08G001550Watermelon (97103) v1wgowmB503
Bhi08G001550Silver-seed gourdcarwgoB0193
Bhi08G001550Silver-seed gourdcarwgoB0760
Bhi08G001550Silver-seed gourdcarwgoB1047
Bhi08G001550Silver-seed gourdcarwgoB1077