CSPI01G11590 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G11590
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 7278556 .. 7278851 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGCGGCTAGTGTGGGTGTGATGGAAAGTAGCTACGCCAGTAATGATCAGTACTTCGTTTTTCAGTCCAAGCTCCAGCAGTTTCAGCAGAATGGCGAAGGCAAGGCCGCTCAGGAACTTGGCGCCAGAAGTAGCTTTCACAAGTATGGAAAAGGTGGAGAAGGAGGAAGAAGAGGAAAGGAGATTCATAGGGCTGAAGATTCTCTTCATAAAGTCATGTACTTGAATTGTTGGACACAAAGCTAGCTGAATAATTACCCACTTGATCTTCTGTTTATGCCTAATTAAACAAC

mRNA sequence

ATGGGTGCGGCTAGTGTGGGTGTGATGGAAAGTAGCTACGCCAGTAATGATCAGTACTTCGTTTTTCAGTCCAAGCTCCAGCAGTTTCAGCAGAATGGCGAAGGCAAGGCCGCTCAGGAACTTGGCGCCAGAAGTAGCTTTCACAAGTATGGAAAAGGTGGAGAAGGAGGAAGAAGAGGAAAGGAGATTCATAGGGCTGAAGATTCTCTTCATAAAGTCATGTACTTGAATTGTTGGACACAAAGCTAG

Coding sequence (CDS)

ATGGGTGCGGCTAGTGTGGGTGTGATGGAAAGTAGCTACGCCAGTAATGATCAGTACTTCGTTTTTCAGTCCAAGCTCCAGCAGTTTCAGCAGAATGGCGAAGGCAAGGCCGCTCAGGAACTTGGCGCCAGAAGTAGCTTTCACAAGTATGGAAAAGGTGGAGAAGGAGGAAGAAGAGGAAAGGAGATTCATAGGGCTGAAGATTCTCTTCATAAAGTCATGTACTTGAATTGTTGGACACAAAGCTAG
Homology
[Close]
BLAST of CSPI01G11590 vs. TrEMBL
Match: A0A0A0LS84_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G071860 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-38
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 

Query: 1  MGAASVGVMESSYASNDQYFVFQSKLQQFQQNGEGKAAQELGARSSFHKYGKGGEGGRRG 60
          MGAASVGVMESSYASNDQYFVFQSKLQQFQQNGEGKAAQELGARSSFHKYGKGGEGGRRG
Sbjct: 9  MGAASVGVMESSYASNDQYFVFQSKLQQFQQNGEGKAAQELGARSSFHKYGKGGEGGRRG 68

Query: 61 KEIHRAEDSLHKVMYLNCWTQS 83
          KEIHRAEDSLHKVMYLNCWTQS
Sbjct: 69 KEIHRAEDSLHKVMYLNCWTQS 90

[Close]
BLAST of CSPI01G11590 vs. NCBI nr
Match: gi|700209527|gb|KGN64623.1| (hypothetical protein Csa_1G071860 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 1.6e-38
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 

Query: 1  MGAASVGVMESSYASNDQYFVFQSKLQQFQQNGEGKAAQELGARSSFHKYGKGGEGGRRG 60
          MGAASVGVMESSYASNDQYFVFQSKLQQFQQNGEGKAAQELGARSSFHKYGKGGEGGRRG
Sbjct: 9  MGAASVGVMESSYASNDQYFVFQSKLQQFQQNGEGKAAQELGARSSFHKYGKGGEGGRRG 68

Query: 61 KEIHRAEDSLHKVMYLNCWTQS 83
          KEIHRAEDSLHKVMYLNCWTQS
Sbjct: 69 KEIHRAEDSLHKVMYLNCWTQS 90

The following BLAST results are available for this feature:
BLAST of CSPI01G11590 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G11590 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LS84_CUCSA1.1e-38100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G071860 PE=4 SV=1[more]
BLAST of CSPI01G11590 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G11590 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209527|gb|KGN64623.1|1.6e-38100.00hypothetical protein Csa_1G071860 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR022251DUF3774_wound-induced
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G11590.1CSPI01G11590.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022251Protein of unknown function wound-inducedPFAMPF12609DUF3774coord: 3..81
score: 5.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G11590Cla019453Watermelon (97103) v1cpiwmB010
CSPI01G11590Csa1G071860Cucumber (Chinese Long) v2cpicuB000
CSPI01G11590ClCG03G005490Watermelon (Charleston Gray)cpiwcgB038
CSPI01G11590Bhi08G001550Wax gourdcpiwgoB035
CSPI01G11590Cucsa.126240Cucumber (Gy14) v1cgycpiB172
CSPI01G11590CsGy1G011580Cucumber (Gy14) v2cgybcpiB001
CSPI01G11590Carg21468Silver-seed gourdcarcpiB0986
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G11590Watermelon (97103) v2cpiwmbB001
CSPI01G11590Watermelon (97103) v2cpiwmbB016
CSPI01G11590Watermelon (97103) v2cpiwmbB030
CSPI01G11590Watermelon (97103) v2cpiwmbB032
CSPI01G11590Wax gourdcpiwgoB023
CSPI01G11590Wild cucumber (PI 183967)cpicpiB016
CSPI01G11590Wild cucumber (PI 183967)cpicpiB018
CSPI01G11590Wild cucumber (PI 183967)cpicpiB038
CSPI01G11590Cucurbita pepo (Zucchini)cpecpiB025
CSPI01G11590Wild cucumber (PI 183967)cpicpiB050
CSPI01G11590Cucumber (Gy14) v1cgycpiB016
CSPI01G11590Cucumber (Gy14) v1cgycpiB071
CSPI01G11590Cucurbita maxima (Rimu)cmacpiB009
CSPI01G11590Cucurbita maxima (Rimu)cmacpiB219
CSPI01G11590Cucurbita maxima (Rimu)cmacpiB324
CSPI01G11590Cucurbita maxima (Rimu)cmacpiB395
CSPI01G11590Cucurbita maxima (Rimu)cmacpiB508
CSPI01G11590Cucurbita maxima (Rimu)cmacpiB656
CSPI01G11590Cucurbita maxima (Rimu)cmacpiB865
CSPI01G11590Cucurbita moschata (Rifu)cmocpiB000
CSPI01G11590Cucurbita moschata (Rifu)cmocpiB205
CSPI01G11590Cucurbita moschata (Rifu)cmocpiB314
CSPI01G11590Cucurbita moschata (Rifu)cmocpiB383
CSPI01G11590Cucurbita moschata (Rifu)cmocpiB423
CSPI01G11590Cucurbita moschata (Rifu)cmocpiB498
CSPI01G11590Cucurbita moschata (Rifu)cmocpiB648
CSPI01G11590Cucurbita moschata (Rifu)cmocpiB845
CSPI01G11590Cucumber (Chinese Long) v2cpicuB025
CSPI01G11590Cucumber (Chinese Long) v2cpicuB027
CSPI01G11590Cucumber (Chinese Long) v2cpicuB044
CSPI01G11590Cucumber (Chinese Long) v2cpicuB050
CSPI01G11590Melon (DHL92) v3.5.1cpimeB024
CSPI01G11590Melon (DHL92) v3.5.1cpimeB040
CSPI01G11590Melon (DHL92) v3.5.1cpimeB078
CSPI01G11590Melon (DHL92) v3.5.1cpimeB086
CSPI01G11590Watermelon (Charleston Gray)cpiwcgB016
CSPI01G11590Watermelon (Charleston Gray)cpiwcgB036
CSPI01G11590Watermelon (97103) v1cpiwmB043
CSPI01G11590Watermelon (97103) v1cpiwmB072
CSPI01G11590Cucurbita pepo (Zucchini)cpecpiB206
CSPI01G11590Cucurbita pepo (Zucchini)cpecpiB235
CSPI01G11590Cucurbita pepo (Zucchini)cpecpiB506
CSPI01G11590Cucurbita pepo (Zucchini)cpecpiB771
CSPI01G11590Bottle gourd (USVL1VR-Ls)cpilsiB011
CSPI01G11590Bottle gourd (USVL1VR-Ls)cpilsiB018
CSPI01G11590Bottle gourd (USVL1VR-Ls)cpilsiB021
CSPI01G11590Bottle gourd (USVL1VR-Ls)cpilsiB051
CSPI01G11590Melon (DHL92) v3.6.1cpimedB023
CSPI01G11590Melon (DHL92) v3.6.1cpimedB070
CSPI01G11590Melon (DHL92) v3.6.1cpimedB076
CSPI01G11590Cucumber (Gy14) v2cgybcpiB096
CSPI01G11590Cucumber (Gy14) v2cgybcpiB247
CSPI01G11590Cucumber (Gy14) v2cgybcpiB299
CSPI01G11590Silver-seed gourdcarcpiB0169
CSPI01G11590Silver-seed gourdcarcpiB0670
CSPI01G11590Silver-seed gourdcarcpiB0908
CSPI01G11590Silver-seed gourdcarcpiB0937
CSPI01G11590Silver-seed gourdcarcpiB0968
CSPI01G11590Cucumber (Chinese Long) v3cpicucB001
CSPI01G11590Cucumber (Chinese Long) v3cpicucB031
CSPI01G11590Cucumber (Chinese Long) v3cpicucB051
CSPI01G11590Cucumber (Chinese Long) v3cpicucB061