Cucsa.114150 (gene) Cucumber (Gy14) v1

NameCucsa.114150
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionIdentified as a screen for stress-responsive genes.
Locationscaffold00962 : 12635 .. 13124 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGATGGTTATTCCAAAATCAAAGCAGCTTCCAAATTCAAATCAAGATCCATCGATTACTCCGATCTCTCCTCTCTTCCTCACTCTCTCACTTTCAGTGCCGCCGTCTCCAATCCCACCCGAACAAATCGGCCGCAGGAGCCACCGCACGGCCGCTTACCGGAGGAAGACGAAGAAGTAAACGACGACGAATGCGAACGGCCCCGTGGAGCCACCACCGCCGCCGCTACACTTTGTCGAAACAGCTCTGTTTCATCATCGGTTTCCGGATTTCAGTCTGCAGTGAAAAGAGCACTATCGATGCGGAGATCTTCATCCGTAGCGGAACGGTACTGTAGGATTCACGATCAGTTCGCGACATTTGCATCGCCGATCGAGGATGATGAAATGGAAGGGGGAGACTGGAAGGAAAGAGGAAAAATAGGAGGATCTGAGATAAGGAAGAAGAAGAAGAAGAAGAACGCGGCAGAGAAGATCGTTAGAGCAT

mRNA sequence

ATGGCGGATGGTTATTCCAAAATCAAAGCAGCTTCCAAATTCAAATCAAGATCCATCGATTACTCCGATCTCTCCTCTCTTCCTCACTCTCTCACTTTCAGTGCCGCCGTCTCCAATCCCACCCGAACAAATCGGCCGCAGGAGCCACCGCACGGCCGCTTACCGGAGGAAGACGAAGAAGTAAACGACGACGAATGCGAACGGCCCCGTGGAGCCACCACCGCCGCCGCTACACTTTGTCGAAACAGCTCTGTTTCATCATCGGTTTCCGGATTTCAGTCTGCAGTGAAAAGAGCACTATCGATGCGGAGATCTTCATCCGTAGCGGAACGGTACTGTAGGATTCACGATCAGTTCGCGACATTTGCATCGCCGATCGAGGATGATGAAATGGAAGGGGGAGACTGGAAGGAAAGAGGAAAAATAGGAGGATCTGAGATAAGgaagaagaagaagaagaagaaCGCGGCAGAGAAGATCGTTAGAGCAT

Coding sequence (CDS)

ATGGCGGATGGTTATTCCAAAATCAAAGCAGCTTCCAAATTCAAATCAAGATCCATCGATTACTCCGATCTCTCCTCTCTTCCTCACTCTCTCACTTTCAGTGCCGCCGTCTCCAATCCCACCCGAACAAATCGGCCGCAGGAGCCACCGCACGGCCGCTTACCGGAGGAAGACGAAGAAGTAAACGACGACGAATGCGAACGGCCCCGTGGAGCCACCACCGCCGCCGCTACACTTTGTCGAAACAGCTCTGTTTCATCATCGGTTTCCGGATTTCAGTCTGCAGTGAAAAGAGCACTATCGATGCGGAGATCTTCATCCGTAGCGGAACGGTACTGTAGGATTCACGATCAGTTCGCGACATTTGCATCGCCGATCGAGGATGATGAAATGGAAGGGGGAGACTGGAAGGAAAGAGGAAAAATAGGAGGATCTGAGATAAGGAAGAAGAAGAAGAAGAAGAACGCGGCAGAGAAGATCGTTAGAGCAT

Protein sequence

MADGYSKIKAASKFKSRSIDYSDLSSLPHSLTFSAAVSNPTRTNRPQEPPHGRLPEEDEEVNDDECERPRGATTAAATLCRNSSVSSSVSGFQSAVKRALSMRRSSSVAERYCRIHDQFATFASPIEDDEMEGGDWKERGKIGGSEIRKKKKKKNAAEKIVRAX
BLAST of Cucsa.114150 vs. TrEMBL
Match: A0A0A0L2N9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G110030 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 8.4e-86
Identity = 162/163 (99.39%), Postives = 163/163 (100.00%), Query Frame = 1

Query: 1   MADGYSKIKAASKFKSRSIDYSDLSSLPHSLTFSAAVSNPTRTNRPQEPPHGRLPEEDEE 60
           MADGYSKIKAASKFKSRSIDYSDLSSLPHSLTFSAAVSNPTRTNRPQEPPHGRLPEEDEE
Sbjct: 1   MADGYSKIKAASKFKSRSIDYSDLSSLPHSLTFSAAVSNPTRTNRPQEPPHGRLPEEDEE 60

Query: 61  VNDDECERPRGATTAAATLCRNSSVSSSVSGFQSAVKRALSMRRSSSVAERYCRIHDQFA 120
           VNDDEC+RPRGATTAAATLCRNSSVSSSVSGFQSAVKRALSMRRSSSVAERYCRIHDQFA
Sbjct: 61  VNDDECDRPRGATTAAATLCRNSSVSSSVSGFQSAVKRALSMRRSSSVAERYCRIHDQFA 120

Query: 121 TFASPIEDDEMEGGDWKERGKIGGSEIRKKKKKKNAAEKIVRA 164
           TFASPIEDDEMEGGDWKERGKIGGSEIRKKKKKKNAAEKIVRA
Sbjct: 121 TFASPIEDDEMEGGDWKERGKIGGSEIRKKKKKKNAAEKIVRA 163

BLAST of Cucsa.114150 vs. TrEMBL
Match: A0A061DXA0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_006157 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 6.8e-19
Identity = 71/175 (40.57%), Postives = 97/175 (55.43%), Query Frame = 1

Query: 3   DGYSKIKAASKFKSRSIDYSDLSSLPHSLTFSAAVSNPTRTNRPQE-------------- 62
           +GYSK+KA     SRS+D SDL  LP +    ++++ P  T + QE              
Sbjct: 2   NGYSKMKAVGNGSSRSMDSSDLMPLPQTPKPISSIT-PNHTEKNQEINQVVIKNSNPITT 61

Query: 63  PPHGRLPEEDEEVNDDECERPRGATTAAATLCRNSSVSSSVSGFQSAVKRALSMRRSSSV 122
                  E+++E N++E   P+        L RNSSVSSS +  Q+AVKRA SMRRSSSV
Sbjct: 62  QQDSSEQEDEQEGNNEEMFGPK--------LRRNSSVSSSYA-LQAAVKRAFSMRRSSSV 121

Query: 123 AERYCRIHDQFATFASPIEDDEMEGGDWKERGKIGGSEIRKKKKKKNAAEKIVRA 164
           +ERYCRIHDQ  T ASP +D+E++    +          R  KKKKN+  KI++A
Sbjct: 122 SERYCRIHDQSVTLASPFDDEELDTTGTR----------RSAKKKKNSRGKILKA 156

BLAST of Cucsa.114150 vs. TrEMBL
Match: M5XW66_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024829mg PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-15
Identity = 72/174 (41.38%), Postives = 93/174 (53.45%), Query Frame = 1

Query: 3   DGYSKIKAASKFKSRSIDYSDLSSLPHSLTFSAAVSNPTR----TN---RPQEPPHGRLP 62
           D YSKI   S+  SRSID+SDL S   +   S   +NPT+    TN   +       +  
Sbjct: 2   DKYSKIMRHSQ-NSRSIDFSDLVSFSPTQK-SNTTTNPTKKTQETNLQIKKNSTTQDQKG 61

Query: 63  EEDEEVNDDECERPRGATTAAATLCRNSSVSSS----VSGFQSAVKRALSMRRSSSVAER 122
           +ED+E   +      G+  A   L RN+S+SSS     SGFQSA K A SMRRSSSV+ER
Sbjct: 62  DEDDEQQGNSVGESFGSVVA---LKRNNSISSSSSLAASGFQSAFKGAFSMRRSSSVSER 121

Query: 123 YCRIHDQFAT--FASPIEDDEMEGGDWKERGKIGGSEIRKKKKKKNAAEKIVRA 164
           YCRIHDQ  T   +SPI+DDE +   W            +  KKK+   KI++A
Sbjct: 122 YCRIHDQSTTTLTSSPIDDDEDQAAAW---------GTTRSMKKKHKGGKILKA 161

BLAST of Cucsa.114150 vs. TrEMBL
Match: U7E1G7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0022s00510g PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.9e-15
Identity = 60/136 (44.12%), Postives = 76/136 (55.88%), Query Frame = 1

Query: 3   DGYSKIKAASKFKSRSIDYSDLSSLPHSLTFSAAVSNPTRTNR---PQEPPHGRLPEEDE 62
           +GYSKIK     +SRS+D+SDLS      T S   + P  TN+     +     +   D 
Sbjct: 2   NGYSKIKIFGTARSRSMDFSDLSLAFPEPTKSH--TEPQETNKIVGDHDNTKKNMISTDT 61

Query: 63  EVND-----DECERPRGATTAAATLCRNSSVSSSVSGFQSAVKRALSMRRSSSVAERYCR 122
              D     +E E         A L R+SSVSSS S  QSAVK+A S+ RSSSV+ERYCR
Sbjct: 62  TTQDSLSVLEEDEENNVVEGFGAKLRRSSSVSSSASALQSAVKKAFSVTRSSSVSERYCR 121

Query: 123 IHDQFATFASPIEDDE 131
           IHDQ AT +SPI D++
Sbjct: 122 IHDQSATLSSPIHDED 135

BLAST of Cucsa.114150 vs. TrEMBL
Match: A0A166GLL0_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_001747 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.3e-14
Identity = 63/170 (37.06%), Postives = 84/170 (49.41%), Query Frame = 1

Query: 5   YSKIKAASKF-KSRSIDYSDLSSLPHSLTFSAAVSNPTRTNRPQEPPHGRLPEEDEEVND 64
           YSK+K  +   KSRS+D+SDL S P         + P  T    + P  ++    +++N+
Sbjct: 4   YSKMKLVNNSTKSRSMDFSDLQSFPLETKIP---TEPQHTKIKTQEPKTQINNTLQKLNE 63

Query: 65  DECERPRG-ATTAAATLCRNSSVSSSVSGFQ---------SAVKRALSMRRSSSVAERYC 124
           +E        +   A L RN SVS + S            SAVKR  SMRRSSSV+ERYC
Sbjct: 64  EEHNNNSSEGSFGMAKLSRNRSVSVNTSSLNMFKIEKQGSSAVKRVFSMRRSSSVSERYC 123

Query: 125 RIHDQFATFASPIEDDEMEGGDWKERGKIGGSEIRKKKKKKNAAEKIVRA 164
           RIHDQ  T ASP+ DDE                   KKKKK ++  I++A
Sbjct: 124 RIHDQAVTVASPLHDDE------------DAHSTSVKKKKKYSSSSILKA 158

BLAST of Cucsa.114150 vs. TAIR10
Match: AT4G24275.1 (AT4G24275.1 Identified as a screen for stress-responsive genes.)

HSP 1 Score: 62.0 bits (149), Expect = 3.9e-10
Identity = 44/108 (40.74%), Postives = 57/108 (52.78%), Query Frame = 1

Query: 56  EEDEEVNDDECERPR-GATTAAATLCRNSSVSSSVSGFQSAVKRALSMRRSSSVAERYCR 115
           E D  V D + ++P          L RN SVS+S     S +K  +SMRRSSSV+ERYCR
Sbjct: 15  EPDHPVVDPQIQKPDLEPAEMKPKLSRNRSVSASAQAVPSPIK--MSMRRSSSVSERYCR 74

Query: 116 IHDQFATFASPI---EDDEMEGGDWKERGKIGGSEIRKKKKKKNAAEK 160
           I+DQ +    P+   E DE E  D KE+       + KKKK  N  +K
Sbjct: 75  IYDQSSATTWPLPFHEGDEDEDDDDKEK-------VHKKKKSNNFKKK 113

BLAST of Cucsa.114150 vs. NCBI nr
Match: gi|700201122|gb|KGN56255.1| (hypothetical protein Csa_3G110030 [Cucumis sativus])

HSP 1 Score: 324.3 bits (830), Expect = 1.2e-85
Identity = 162/163 (99.39%), Postives = 163/163 (100.00%), Query Frame = 1

Query: 1   MADGYSKIKAASKFKSRSIDYSDLSSLPHSLTFSAAVSNPTRTNRPQEPPHGRLPEEDEE 60
           MADGYSKIKAASKFKSRSIDYSDLSSLPHSLTFSAAVSNPTRTNRPQEPPHGRLPEEDEE
Sbjct: 1   MADGYSKIKAASKFKSRSIDYSDLSSLPHSLTFSAAVSNPTRTNRPQEPPHGRLPEEDEE 60

Query: 61  VNDDECERPRGATTAAATLCRNSSVSSSVSGFQSAVKRALSMRRSSSVAERYCRIHDQFA 120
           VNDDEC+RPRGATTAAATLCRNSSVSSSVSGFQSAVKRALSMRRSSSVAERYCRIHDQFA
Sbjct: 61  VNDDECDRPRGATTAAATLCRNSSVSSSVSGFQSAVKRALSMRRSSSVAERYCRIHDQFA 120

Query: 121 TFASPIEDDEMEGGDWKERGKIGGSEIRKKKKKKNAAEKIVRA 164
           TFASPIEDDEMEGGDWKERGKIGGSEIRKKKKKKNAAEKIVRA
Sbjct: 121 TFASPIEDDEMEGGDWKERGKIGGSEIRKKKKKKNAAEKIVRA 163

BLAST of Cucsa.114150 vs. NCBI nr
Match: gi|590681929|ref|XP_007041211.1| (Uncharacterized protein TCM_006157 [Theobroma cacao])

HSP 1 Score: 102.1 bits (253), Expect = 9.7e-19
Identity = 71/175 (40.57%), Postives = 97/175 (55.43%), Query Frame = 1

Query: 3   DGYSKIKAASKFKSRSIDYSDLSSLPHSLTFSAAVSNPTRTNRPQE-------------- 62
           +GYSK+KA     SRS+D SDL  LP +    ++++ P  T + QE              
Sbjct: 2   NGYSKMKAVGNGSSRSMDSSDLMPLPQTPKPISSIT-PNHTEKNQEINQVVIKNSNPITT 61

Query: 63  PPHGRLPEEDEEVNDDECERPRGATTAAATLCRNSSVSSSVSGFQSAVKRALSMRRSSSV 122
                  E+++E N++E   P+        L RNSSVSSS +  Q+AVKRA SMRRSSSV
Sbjct: 62  QQDSSEQEDEQEGNNEEMFGPK--------LRRNSSVSSSYA-LQAAVKRAFSMRRSSSV 121

Query: 123 AERYCRIHDQFATFASPIEDDEMEGGDWKERGKIGGSEIRKKKKKKNAAEKIVRA 164
           +ERYCRIHDQ  T ASP +D+E++    +          R  KKKKN+  KI++A
Sbjct: 122 SERYCRIHDQSVTLASPFDDEELDTTGTR----------RSAKKKKNSRGKILKA 156

BLAST of Cucsa.114150 vs. NCBI nr
Match: gi|731411427|ref|XP_010657977.1| (PREDICTED: uncharacterized protein LOC104881045 [Vitis vinifera])

HSP 1 Score: 92.4 bits (228), Expect = 7.7e-16
Identity = 73/171 (42.69%), Postives = 93/171 (54.39%), Query Frame = 1

Query: 3   DGYSKIK--AASKFKSRSIDYSDLSSLPHSLTFSAAVSNPTRTNRP-QEPPHGRLPEE-D 62
           +GY K+K       KSRS+D++DL S P +         P  T  P  + P+   P    
Sbjct: 2   NGYPKMKFLRCRSTKSRSMDFADLLSFPQT---------PKNTQNPTSKTPYANKPTTAH 61

Query: 63  EEVNDDECERPRGATTAAATLCRNSSVSSSVSGFQSAVKRALSMRRSSSVAERYCRIHDQ 122
           + V+D + E      +    L RNSSV+S+ S  QSAVKRA SMRRSSSV+ERYCRIHDQ
Sbjct: 62  DSVSDPDDEDGIKGGSFGGVLRRNSSVTSAAS-LQSAVKRAFSMRRSSSVSERYCRIHDQ 121

Query: 123 FAT--FASP---IEDDE-MEGGDWKERGKIGGSEIRKKKKKKNAAEKIVRA 164
            AT    SP   I+D+E M+GG  K R       + KK KKK    KI +A
Sbjct: 122 SATAFLQSPPNNIDDEESMDGGTMKTR------SMEKKMKKKQKNGKIFKA 156

BLAST of Cucsa.114150 vs. NCBI nr
Match: gi|596253096|ref|XP_007224729.1| (hypothetical protein PRUPE_ppa024829mg [Prunus persica])

HSP 1 Score: 91.3 bits (225), Expect = 1.7e-15
Identity = 72/174 (41.38%), Postives = 93/174 (53.45%), Query Frame = 1

Query: 3   DGYSKIKAASKFKSRSIDYSDLSSLPHSLTFSAAVSNPTR----TN---RPQEPPHGRLP 62
           D YSKI   S+  SRSID+SDL S   +   S   +NPT+    TN   +       +  
Sbjct: 2   DKYSKIMRHSQ-NSRSIDFSDLVSFSPTQK-SNTTTNPTKKTQETNLQIKKNSTTQDQKG 61

Query: 63  EEDEEVNDDECERPRGATTAAATLCRNSSVSSS----VSGFQSAVKRALSMRRSSSVAER 122
           +ED+E   +      G+  A   L RN+S+SSS     SGFQSA K A SMRRSSSV+ER
Sbjct: 62  DEDDEQQGNSVGESFGSVVA---LKRNNSISSSSSLAASGFQSAFKGAFSMRRSSSVSER 121

Query: 123 YCRIHDQFAT--FASPIEDDEMEGGDWKERGKIGGSEIRKKKKKKNAAEKIVRA 164
           YCRIHDQ  T   +SPI+DDE +   W            +  KKK+   KI++A
Sbjct: 122 YCRIHDQSTTTLTSSPIDDDEDQAAAW---------GTTRSMKKKHKGGKILKA 161

BLAST of Cucsa.114150 vs. NCBI nr
Match: gi|1021023777|gb|KZM81565.1| (hypothetical protein DCAR_029178 [Daucus carota subsp. sativus])

HSP 1 Score: 90.9 bits (224), Expect = 2.2e-15
Identity = 68/168 (40.48%), Postives = 88/168 (52.38%), Query Frame = 1

Query: 3   DGYSKIKAA-SKFKSRSIDYSDLSSLPHSLTFSAAVSNPTRTNRPQEPPHGRLPEEDEEV 62
           DGYSKIK   S  KSRSID+SDL S P  +      + P   N   + P  ++    +++
Sbjct: 2   DGYSKIKLVNSSTKSRSIDFSDLQSFPLEIKNQ---TEPQAINSETQEPETQINTNLQKL 61

Query: 63  ND--DECERPRGATTAAAT----LCRNSSVSSSVSGFQ---------SAVKRALSMRRSS 122
           ND  +  E    +T    +    L RN SVS S S            +AVKRA SMRRSS
Sbjct: 62  NDSSENAEANSRSTNEGRSGMVKLSRNRSVSVSNSASNRFKIEKHSTNAVKRAFSMRRSS 121

Query: 123 SVAERYCRIHDQFATFASPI-EDDEMEGGDWKERGKIGGSEIRKKKKK 154
           SV+E+YCRIHDQ  T ASP+ +DD+M+    K   K   S I K  K+
Sbjct: 122 SVSEKYCRIHDQTLTAASPLHDDDDMQQTSVKSTKKYSSSRILKACKR 166

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L2N9_CUCSA8.4e-8699.39Uncharacterized protein OS=Cucumis sativus GN=Csa_3G110030 PE=4 SV=1[more]
A0A061DXA0_THECC6.8e-1940.57Uncharacterized protein OS=Theobroma cacao GN=TCM_006157 PE=4 SV=1[more]
M5XW66_PRUPE1.2e-1541.38Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024829mg PE=4 SV=1[more]
U7E1G7_POPTR5.9e-1544.12Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0022s00510g PE=4 SV=1[more]
A0A166GLL0_DAUCA2.3e-1437.06Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_001747 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G24275.13.9e-1040.74 Identified as a screen for stress-responsive genes.[more]
Match NameE-valueIdentityDescription
gi|700201122|gb|KGN56255.1|1.2e-8599.39hypothetical protein Csa_3G110030 [Cucumis sativus][more]
gi|590681929|ref|XP_007041211.1|9.7e-1940.57Uncharacterized protein TCM_006157 [Theobroma cacao][more]
gi|731411427|ref|XP_010657977.1|7.7e-1642.69PREDICTED: uncharacterized protein LOC104881045 [Vitis vinifera][more]
gi|596253096|ref|XP_007224729.1|1.7e-1541.38hypothetical protein PRUPE_ppa024829mg [Prunus persica][more]
gi|1021023777|gb|KZM81565.1|2.2e-1540.48hypothetical protein DCAR_029178 [Daucus carota subsp. sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.114150.1Cucsa.114150.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR38386FAMILY NOT NAMEDcoord: 56..163
score: 5.3