Cp4.1LG01g08460 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG01g08460
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 4856622 .. 4857128 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGATACCTACTCCAAGATCGAAGCCGCCTGCAAATTGAAATCAAGATCTGTAGATTACTCCGATCTTTCATCGCTCCCTCACTCTCTTAGATTCACCGCTGCCGTCTCCAATCCGAACTCTCGCGATTCCGATCAAAACAGGACGAATCGGTCGCGGGAGCCGCCGCATGGTTGCTTGCCAGAGGAGGAAGAAGACGAATACCGCAGCGCTGCAACCGCTACTGCCTCTACGCTGAGACGGAACTGCTCTGTTTCTGCATCGGCCTCCGGATTCCACTCGGCAGTGAAGAGAGCTCTGTCGATGCGACGATCTTCGTCTGTGGCGGAGCGGTACAGTAGGATTCACGATCAGTTCGGGACGCTTGCATCGCCGATCGACGACGATGAAATCGAAGGCGAAGAATCGAAGGAAGGCCGAAATGCGGGAGGATCTGTAAGGAAGAAGAAGACGAACGCGGCTGGGAAGATCGTTAGAGCTTGTAAGCGACTTTTTGGACTGTAG

mRNA sequence

ATGGCCGATACCTACTCCAAGATCGAAGCCGCCTGCAAATTGAAATCAAGATCTGTAGATTACTCCGATCTTTCATCGCTCCCTCACTCTCTTAGATTCACCGCTGCCGTCTCCAATCCGAACTCTCGCGATTCCGATCAAAACAGGACGAATCGGTCGCGGGAGCCGCCGCATGGTTGCTTGCCAGAGGAGGAAGAAGACGAATACCGCAGCGCTGCAACCGCTACTGCCTCTACGCTGAGACGGAACTGCTCTGTTTCTGCATCGGCCTCCGGATTCCACTCGGCAGTGAAGAGAGCTCTGTCGATGCGACGATCTTCGTCTGTGGCGGAGCGGTACAGTAGGATTCACGATCAGTTCGGGACGCTTGCATCGCCGATCGACGACGATGAAATCGAAGGCGAAGAATCGAAGGAAGGCCGAAATGCGGGAGGATCTGTAAGGAAGAAGAAGACGAACGCGGCTGGGAAGATCGTTAGAGCTTGTAAGCGACTTTTTGGACTGTAG

Coding sequence (CDS)

ATGGCCGATACCTACTCCAAGATCGAAGCCGCCTGCAAATTGAAATCAAGATCTGTAGATTACTCCGATCTTTCATCGCTCCCTCACTCTCTTAGATTCACCGCTGCCGTCTCCAATCCGAACTCTCGCGATTCCGATCAAAACAGGACGAATCGGTCGCGGGAGCCGCCGCATGGTTGCTTGCCAGAGGAGGAAGAAGACGAATACCGCAGCGCTGCAACCGCTACTGCCTCTACGCTGAGACGGAACTGCTCTGTTTCTGCATCGGCCTCCGGATTCCACTCGGCAGTGAAGAGAGCTCTGTCGATGCGACGATCTTCGTCTGTGGCGGAGCGGTACAGTAGGATTCACGATCAGTTCGGGACGCTTGCATCGCCGATCGACGACGATGAAATCGAAGGCGAAGAATCGAAGGAAGGCCGAAATGCGGGAGGATCTGTAAGGAAGAAGAAGACGAACGCGGCTGGGAAGATCGTTAGAGCTTGTAAGCGACTTTTTGGACTGTAG

Protein sequence

MADTYSKIEAACKLKSRSVDYSDLSSLPHSLRFTAAVSNPNSRDSDQNRTNRSREPPHGCLPEEEEDEYRSAATATASTLRRNCSVSASASGFHSAVKRALSMRRSSSVAERYSRIHDQFGTLASPIDDDEIEGEESKEGRNAGGSVRKKKTNAAGKIVRACKRLFGL
BLAST of Cp4.1LG01g08460 vs. TrEMBL
Match: A0A0A0L2N9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G110030 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 6.0e-47
Identity = 118/177 (66.67%), Postives = 132/177 (74.58%), Query Frame = 1

Query: 1   MADTYSKIEAACKLKSRSVDYSDLSSLPHSLRFTAAVSNPNSRDSDQNRTNRSREPPHGC 60
           MAD YSKI+AA K KSRS+DYSDLSSLPHSL F+AAVSNP        RTNR +EPPHG 
Sbjct: 1   MADGYSKIKAASKFKSRSIDYSDLSSLPHSLTFSAAVSNPT-------RTNRPQEPPHGR 60

Query: 61  LPEEEED------EYRSAATATASTLRRNCSVSASASGFHSAVKRALSMRRSSSVAERYS 120
           LPEE+E+      +    AT  A+TL RN SVS+S SGF SAVKRALSMRRSSSVAERY 
Sbjct: 61  LPEEDEEVNDDECDRPRGATTAAATLCRNSSVSSSVSGFQSAVKRALSMRRSSSVAERYC 120

Query: 121 RIHDQFGTLASPIDDDEIEGEESKEGRNAGGS---VRKKKTNAAGKIVRACKRLFGL 169
           RIHDQF T ASPI+DDE+EG + KE    GGS    +KKK NAA KIVRACKR+FGL
Sbjct: 121 RIHDQFATFASPIEDDEMEGGDWKERGKIGGSEIRKKKKKKNAAEKIVRACKRIFGL 170

BLAST of Cp4.1LG01g08460 vs. TrEMBL
Match: A0A061DXA0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_006157 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.0e-14
Identity = 69/169 (40.83%), Postives = 99/169 (58.58%), Query Frame = 1

Query: 5   YSKIEAACKLKSRSVDYSDLSSLPHSLRFTAAVSNPNSRDSDQNRT-----NRSREPPHG 64
           YSK++A     SRS+D SDL  LP + +  ++++ PN  + +Q        N +      
Sbjct: 4   YSKMKAVGNGSSRSMDSSDLMPLPQTPKPISSIT-PNHTEKNQEINQVVIKNSNPITTQQ 63

Query: 65  CLPEEEEDEYRSAATATASTLRRNCSVSASASGFHSAVKRALSMRRSSSVAERYSRIHDQ 124
              E+E+++  +        LRRN SVS+S +   +AVKRA SMRRSSSV+ERY RIHDQ
Sbjct: 64  DSSEQEDEQEGNNEEMFGPKLRRNSSVSSSYA-LQAAVKRAFSMRRSSSVSERYCRIHDQ 123

Query: 125 FGTLASPIDDDEIEGEESKEGRNAGGSVRKKKTNAAGKIVRACKRLFGL 169
             TLASP DD+E++   ++          KKK N+ GKI++A K+LFGL
Sbjct: 124 SVTLASPFDDEELDTTGTRRS-------AKKKKNSRGKILKAWKKLFGL 163

BLAST of Cp4.1LG01g08460 vs. TrEMBL
Match: M5XW66_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024829mg PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.0e-14
Identity = 72/176 (40.91%), Postives = 99/176 (56.25%), Query Frame = 1

Query: 3   DTYSKIEAACKLKSRSVDYSDLSSLPHSLRFTAAVSNPNSRDSDQN---RTNRSREPPHG 62
           D YSKI    +  SRS+D+SDL S   + + +   +NP  +  + N   + N + +   G
Sbjct: 2   DKYSKIMRHSQ-NSRSIDFSDLVSFSPTQK-SNTTTNPTKKTQETNLQIKKNSTTQDQKG 61

Query: 63  CLPEEEEDEYRSAATATASTLRRNCSVSAS----ASGFHSAVKRALSMRRSSSVAERYSR 122
              +E++      +  +   L+RN S+S+S    ASGF SA K A SMRRSSSV+ERY R
Sbjct: 62  DEDDEQQGNSVGESFGSVVALKRNNSISSSSSLAASGFQSAFKGAFSMRRSSSVSERYCR 121

Query: 123 IHDQFGT--LASPIDDDEIEGEESKEGRNAGGSVRK-KKTNAAGKIVRACKRLFGL 169
           IHDQ  T   +SPIDDDE +         A G+ R  KK +  GKI++ACKR FGL
Sbjct: 122 IHDQSTTTLTSSPIDDDEDQAA-------AWGTTRSMKKKHKGGKILKACKRFFGL 168

BLAST of Cp4.1LG01g08460 vs. TrEMBL
Match: U7E1G7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0022s00510g PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.9e-14
Identity = 65/169 (38.46%), Postives = 93/169 (55.03%), Query Frame = 1

Query: 5   YSKIEAACKLKSRSVDYSDLS-SLPHSLRFTAAVSNPNSRDSDQNRTNRSR----EPPHG 64
           YSKI+     +SRS+D+SDLS + P   +        N    D + T ++          
Sbjct: 4   YSKIKIFGTARSRSMDFSDLSLAFPEPTKSHTEPQETNKIVGDHDNTKKNMISTDTTTQD 63

Query: 65  CLPEEEEDEYRSAATATASTLRRNCSVSASASGFHSAVKRALSMRRSSSVAERYSRIHDQ 124
            L   EEDE  +      + LRR+ SVS+SAS   SAVK+A S+ RSSSV+ERY RIHDQ
Sbjct: 64  SLSVLEEDEENNVVEGFGAKLRRSSSVSSSASALQSAVKKAFSVTRSSSVSERYCRIHDQ 123

Query: 125 FGTLASPIDDDEIEGEESKEGRNAGGSVRKKKTNAAGKIVRACKRLFGL 169
             TL+SPI D++   +  +  R+       KK + +G+ ++ CK+LFGL
Sbjct: 124 SATLSSPIHDEDGTLDTMESTRSV-----TKKHSRSGRFLKVCKKLFGL 167

BLAST of Cp4.1LG01g08460 vs. TrEMBL
Match: W9QEB7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001375 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-12
Identity = 67/147 (45.58%), Postives = 88/147 (59.86%), Query Frame = 1

Query: 22  SDLSSLPHSLRFTAAVSNPNSRDSDQNRTNRSREPPHGCLPEEEEDEYRSAATATASTLR 81
           +D SS   SL  +++ S+P  R+ D +      E  +G +  +  D+    +++  + L 
Sbjct: 66  ADNSSSSSSLSSSSS-SSPRKRNDDHDHREEV-ENVNGDIARKA-DKAAFGSSSNNAVLG 125

Query: 82  RNCSVSASASGFHSAVKRALSMRRSSSVAERYSRIHDQFGTLASPIDDDEIEGEESKEGR 141
           RN SVS S S    AVKR LSMRRSSSV+ERY RIHDQ  TLASPIDD++ E EE K   
Sbjct: 126 RNSSVSNSMS----AVKRVLSMRRSSSVSERYCRIHDQSVTLASPIDDEDDELEEDKTRS 185

Query: 142 NAGGSVRKKKTNAAGKIVRACKRLFGL 169
                  KKK +  GKI++ACKRLFGL
Sbjct: 186 G------KKKKHGGGKILKACKRLFGL 199

BLAST of Cp4.1LG01g08460 vs. TAIR10
Match: AT4G24275.1 (AT4G24275.1 Identified as a screen for stress-responsive genes.)

HSP 1 Score: 54.7 bits (130), Expect = 6.4e-08
Identity = 51/130 (39.23%), Postives = 72/130 (55.38%), Query Frame = 1

Query: 45  SDQNRTNRSREPPHGCL-PEEEEDEYRSAATATASTLRRNCSVSASASGFHSAVKRALSM 104
           S  + T++  EP H  + P+ ++ +   A       L RN SVSASA    S +K  +SM
Sbjct: 5   SKMDSTDQKLEPDHPVVDPQIQKPDLEPAEMKPK--LSRNRSVSASAQAVPSPIK--MSM 64

Query: 105 RRSSSVAERYSRIHDQFGTLASPI---DDDEIEGEESKEGRNAGGSVRKKKTNAAGK--I 164
           RRSSSV+ERY RI+DQ      P+   + DE E ++ KE  +     +KKK+N   K   
Sbjct: 65  RRSSSVSERYCRIYDQSSATTWPLPFHEGDEDEDDDDKEKVH-----KKKKSNNFKKKAF 124

Query: 165 VRACKRLFGL 169
           V+ACKR FG+
Sbjct: 125 VKACKRFFGI 125

BLAST of Cp4.1LG01g08460 vs. NCBI nr
Match: gi|700201122|gb|KGN56255.1| (hypothetical protein Csa_3G110030 [Cucumis sativus])

HSP 1 Score: 195.3 bits (495), Expect = 8.7e-47
Identity = 118/177 (66.67%), Postives = 132/177 (74.58%), Query Frame = 1

Query: 1   MADTYSKIEAACKLKSRSVDYSDLSSLPHSLRFTAAVSNPNSRDSDQNRTNRSREPPHGC 60
           MAD YSKI+AA K KSRS+DYSDLSSLPHSL F+AAVSNP        RTNR +EPPHG 
Sbjct: 1   MADGYSKIKAASKFKSRSIDYSDLSSLPHSLTFSAAVSNPT-------RTNRPQEPPHGR 60

Query: 61  LPEEEED------EYRSAATATASTLRRNCSVSASASGFHSAVKRALSMRRSSSVAERYS 120
           LPEE+E+      +    AT  A+TL RN SVS+S SGF SAVKRALSMRRSSSVAERY 
Sbjct: 61  LPEEDEEVNDDECDRPRGATTAAATLCRNSSVSSSVSGFQSAVKRALSMRRSSSVAERYC 120

Query: 121 RIHDQFGTLASPIDDDEIEGEESKEGRNAGGS---VRKKKTNAAGKIVRACKRLFGL 169
           RIHDQF T ASPI+DDE+EG + KE    GGS    +KKK NAA KIVRACKR+FGL
Sbjct: 121 RIHDQFATFASPIEDDEMEGGDWKERGKIGGSEIRKKKKKKNAAEKIVRACKRIFGL 170

BLAST of Cp4.1LG01g08460 vs. NCBI nr
Match: gi|590681929|ref|XP_007041211.1| (Uncharacterized protein TCM_006157 [Theobroma cacao])

HSP 1 Score: 88.2 bits (217), Expect = 1.5e-14
Identity = 69/169 (40.83%), Postives = 99/169 (58.58%), Query Frame = 1

Query: 5   YSKIEAACKLKSRSVDYSDLSSLPHSLRFTAAVSNPNSRDSDQNRT-----NRSREPPHG 64
           YSK++A     SRS+D SDL  LP + +  ++++ PN  + +Q        N +      
Sbjct: 4   YSKMKAVGNGSSRSMDSSDLMPLPQTPKPISSIT-PNHTEKNQEINQVVIKNSNPITTQQ 63

Query: 65  CLPEEEEDEYRSAATATASTLRRNCSVSASASGFHSAVKRALSMRRSSSVAERYSRIHDQ 124
              E+E+++  +        LRRN SVS+S +   +AVKRA SMRRSSSV+ERY RIHDQ
Sbjct: 64  DSSEQEDEQEGNNEEMFGPKLRRNSSVSSSYA-LQAAVKRAFSMRRSSSVSERYCRIHDQ 123

Query: 125 FGTLASPIDDDEIEGEESKEGRNAGGSVRKKKTNAAGKIVRACKRLFGL 169
             TLASP DD+E++   ++          KKK N+ GKI++A K+LFGL
Sbjct: 124 SVTLASPFDDEELDTTGTRRS-------AKKKKNSRGKILKAWKKLFGL 163

BLAST of Cp4.1LG01g08460 vs. NCBI nr
Match: gi|596253096|ref|XP_007224729.1| (hypothetical protein PRUPE_ppa024829mg [Prunus persica])

HSP 1 Score: 86.7 bits (213), Expect = 4.3e-14
Identity = 72/176 (40.91%), Postives = 99/176 (56.25%), Query Frame = 1

Query: 3   DTYSKIEAACKLKSRSVDYSDLSSLPHSLRFTAAVSNPNSRDSDQN---RTNRSREPPHG 62
           D YSKI    +  SRS+D+SDL S   + + +   +NP  +  + N   + N + +   G
Sbjct: 2   DKYSKIMRHSQ-NSRSIDFSDLVSFSPTQK-SNTTTNPTKKTQETNLQIKKNSTTQDQKG 61

Query: 63  CLPEEEEDEYRSAATATASTLRRNCSVSAS----ASGFHSAVKRALSMRRSSSVAERYSR 122
              +E++      +  +   L+RN S+S+S    ASGF SA K A SMRRSSSV+ERY R
Sbjct: 62  DEDDEQQGNSVGESFGSVVALKRNNSISSSSSLAASGFQSAFKGAFSMRRSSSVSERYCR 121

Query: 123 IHDQFGT--LASPIDDDEIEGEESKEGRNAGGSVRK-KKTNAAGKIVRACKRLFGL 169
           IHDQ  T   +SPIDDDE +         A G+ R  KK +  GKI++ACKR FGL
Sbjct: 122 IHDQSTTTLTSSPIDDDEDQAA-------AWGTTRSMKKKHKGGKILKACKRFFGL 168

BLAST of Cp4.1LG01g08460 vs. NCBI nr
Match: gi|566259922|ref|XP_006389515.1| (hypothetical protein POPTR_0022s00510g [Populus trichocarpa])

HSP 1 Score: 86.3 bits (212), Expect = 5.7e-14
Identity = 65/169 (38.46%), Postives = 93/169 (55.03%), Query Frame = 1

Query: 5   YSKIEAACKLKSRSVDYSDLS-SLPHSLRFTAAVSNPNSRDSDQNRTNRSR----EPPHG 64
           YSKI+     +SRS+D+SDLS + P   +        N    D + T ++          
Sbjct: 4   YSKIKIFGTARSRSMDFSDLSLAFPEPTKSHTEPQETNKIVGDHDNTKKNMISTDTTTQD 63

Query: 65  CLPEEEEDEYRSAATATASTLRRNCSVSASASGFHSAVKRALSMRRSSSVAERYSRIHDQ 124
            L   EEDE  +      + LRR+ SVS+SAS   SAVK+A S+ RSSSV+ERY RIHDQ
Sbjct: 64  SLSVLEEDEENNVVEGFGAKLRRSSSVSSSASALQSAVKKAFSVTRSSSVSERYCRIHDQ 123

Query: 125 FGTLASPIDDDEIEGEESKEGRNAGGSVRKKKTNAAGKIVRACKRLFGL 169
             TL+SPI D++   +  +  R+       KK + +G+ ++ CK+LFGL
Sbjct: 124 SATLSSPIHDEDGTLDTMESTRSV-----TKKHSRSGRFLKVCKKLFGL 167

BLAST of Cp4.1LG01g08460 vs. NCBI nr
Match: gi|731411427|ref|XP_010657977.1| (PREDICTED: uncharacterized protein LOC104881045 [Vitis vinifera])

HSP 1 Score: 82.8 bits (203), Expect = 6.3e-13
Identity = 67/159 (42.14%), Postives = 91/159 (57.23%), Query Frame = 1

Query: 15  KSRSVDYSDLSSLPHSLRFTAAVSNPNSRDSDQNRTNRSREPPHGCLPEEEEDEYRSAAT 74
           KSRS+D++DL S P + + T    NP S+    N+   + +        + +DE      
Sbjct: 16  KSRSMDFADLLSFPQTPKNT---QNPTSKTPYANKPTTAHDSV-----SDPDDEDGIKGG 75

Query: 75  ATASTLRRNCSVSASASGFHSAVKRALSMRRSSSVAERYSRIHDQFGTLASPIDDDEIEG 134
           +    LRRN SV+++AS   SAVKRA SMRRSSSV+ERY RIHDQ  T       + I+ 
Sbjct: 76  SFGGVLRRNSSVTSAAS-LQSAVKRAFSMRRSSSVSERYCRIHDQSATAFLQSPPNNIDD 135

Query: 135 EESKEG-----RNAGGSVRKKKTNAAGKIVRACKRLFGL 169
           EES +G     R+    ++KK+ N  GKI +ACKRLFGL
Sbjct: 136 EESMDGGTMKTRSMEKKMKKKQKN--GKIFKACKRLFGL 163

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L2N9_CUCSA6.0e-4766.67Uncharacterized protein OS=Cucumis sativus GN=Csa_3G110030 PE=4 SV=1[more]
A0A061DXA0_THECC1.0e-1440.83Uncharacterized protein OS=Theobroma cacao GN=TCM_006157 PE=4 SV=1[more]
M5XW66_PRUPE3.0e-1440.91Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024829mg PE=4 SV=1[more]
U7E1G7_POPTR3.9e-1438.46Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0022s00510g PE=4 SV=1[more]
W9QEB7_9ROSA1.7e-1245.58Uncharacterized protein OS=Morus notabilis GN=L484_001375 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G24275.16.4e-0839.23 Identified as a screen for stress-responsive genes.[more]
Match NameE-valueIdentityDescription
gi|700201122|gb|KGN56255.1|8.7e-4766.67hypothetical protein Csa_3G110030 [Cucumis sativus][more]
gi|590681929|ref|XP_007041211.1|1.5e-1440.83Uncharacterized protein TCM_006157 [Theobroma cacao][more]
gi|596253096|ref|XP_007224729.1|4.3e-1440.91hypothetical protein PRUPE_ppa024829mg [Prunus persica][more]
gi|566259922|ref|XP_006389515.1|5.7e-1438.46hypothetical protein POPTR_0022s00510g [Populus trichocarpa][more]
gi|731411427|ref|XP_010657977.1|6.3e-1342.14PREDICTED: uncharacterized protein LOC104881045 [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g08460.1Cp4.1LG01g08460.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR38386FAMILY NOT NAMEDcoord: 80..168
score: 4.7
NoneNo IPR availablePANTHERPTHR38386:SF1SUBFAMILY NOT NAMEDcoord: 80..168
score: 4.7