Cucsa.103960 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.103960
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionBnaC03g48850D protein
Locationscaffold00927 : 2610189 .. 2610848 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAGAATTCAGAGCAGCTCCAAGAATCCGATTTGTTTATCCAAATACCGATTCATCTCTCTTTCCGCCGATCGTCGATTTTCAGTTTCCGCCATGTGTAACGGTCACCACCGACCTTTGTTCAGAGGTAGCCTTCCTCCCTACCAGACCTCCGTACCGGAAAACGGCGCCGTATCCGTTGTGGACAACCTACGGGGTCGATTAGAGGAAACCGAGTTGCGGCTGGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAGGAAATGAAACGATTAGTATCTGTGATGGAGATCCTCGAGAACTACCTGAAGCGGCAGTACAGCGACCGTCAAGAATATGTGGTTCGTCTCCTCTCCCCTGTATCTCGAAAATAGAAATTCCTCTTCGCCGTCGGTGTCTATAATTTTAGCTGTACCATCCAAAAACTCGTTTTGTTTACATGCCTCTTCGCTCTTCTCATTCTCAATCCTCGTAGATTGTAATCGCCACCAAATGTATGGATTTATTCCCCCTAGATTTCACTTGTGAATGGAATCGTAGAATCGATACCGTTAGAATCGAGGGGGATTTTCAGTTTTTTGAATGAGAGCGACTTGCAAATCGCTTAAGACGATCATTTTGTTGTTTCTTGATGGAATATATGGCAGTTTT

mRNA sequence

TCAGAATTCAGAGCAGCTCCAAGAATCCGATTTGTTTATCCAAATACCGATTCATCTCTCTTTCCGCCGATCGTCGATTTTCAGTTTCCGCCATGTGTAACGGTCACCACCGACCTTTGTTCAGAGGTAGCCTTCCTCCCTACCAGACCTCCGTACCGGAAAACGGCGCCGTATCCGTTGTGGACAACCTACGGGGTCGATTAGAGGAAACCGAGTTGCGGCTGGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAGGAAATGAAACGATTAGTATCTGTGATGGAGATCCTCGAGAACTACCTGAAGCGGCAGTACAGCGACCGTCAAGAATATGTGGTTCGTCTCCTCTCCCCTGTATCTCGAAAATAGAAATTCCTCTTCGCCGTCGGTGTCTATAATTTTAGCTGTACCATCCAAAAACTCGTTTTGTTTACATGCCTCTTCGCTCTTCTCATTCTCAATCCTCGTAGATTGTAATCGCCACCAAATGTATGGATTTATTCCCCCTAGATTTCACTTGTGAATGGAATCGTAGAATCGATACCGTTAGAATCGAGGGGGATTTTCAGTTTTTTGAATGAGAGCGACTTGCAAATCGCTTAAGACGATCATTTTGTTGTTTCTTGATGGAATATATGGCAGTTTT

Coding sequence (CDS)

ATGTGTAACGGTCACCACCGACCTTTGTTCAGAGGTAGCCTTCCTCCCTACCAGACCTCCGTACCGGAAAACGGCGCCGTATCCGTTGTGGACAACCTACGGGGTCGATTAGAGGAAACCGAGTTGCGGCTGGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAGGAAATGAAACGATTAGTATCTGTGATGGAGATCCTCGAGAACTACCTGAAGCGGCAGTACAGCGACCGTCAAGAATATGTGGTTCGTCTCCTCTCCCCTGTATCTCGAAAATAG

Protein sequence

MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK*
Homology
[Close]
BLAST of Cucsa.103960 vs. Swiss-Prot
Match: SKI34_ARATH (Protein SKIP34 OS=Arabidopsis thaliana GN=SKIP34 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.2e-17
Identity = 50/96 (52.08%), Postives = 67/96 (69.79%), Query Frame = 1 

Query: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
          MC GH++ L   S    ++   E+   SVVD+LR RL ETE RL + RAREAELSR LE 
Sbjct: 1  MCYGHNQSLSSRSSLRRRSHDGEDD--SVVDDLRDRLAETEARLRRARAREAELSRRLEH 60

Query: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 97
          MKR VSVMEI+E +L+R++ ++++ + RL SPVS K
Sbjct: 61 MKRFVSVMEIIETFLERRFQEQKDRIARLFSPVSTK 94

[Close]
BLAST of Cucsa.103960 vs. TrEMBL
Match: A0A0A0KIR5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G498950 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.1e-45
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1 

Query: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
          MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 97
          MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96

[Close]
BLAST of Cucsa.103960 vs. TrEMBL
Match: A0A067K0P3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18706 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-20
Identity = 58/96 (60.42%), Postives = 68/96 (70.83%), Query Frame = 1 

Query: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
          MC GH R L    L P +    EN   SVV++LRGRL ETE RL + RAREAELSR LEE
Sbjct: 1  MCYGHQRSLSPDDLIPSRNRRSENDNTSVVEDLRGRLAETEARLERARAREAELSRRLEE 60

Query: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 97
          MKR VSVMEILE+YLKR++ ++QE+V RL S V  K
Sbjct: 61 MKRFVSVMEILESYLKRRFREQQEHVARLFSSVPAK 96

[Close]
BLAST of Cucsa.103960 vs. TrEMBL
Match: V4RX85_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026840mg PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.4e-19
Identity = 55/96 (57.29%), Postives = 68/96 (70.83%), Query Frame = 1 

Query: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
          MC GH R +   S    +    EN  V VV++LRGRL ETE RLA+ RAREAELSR LEE
Sbjct: 1  MCYGHRRSVSPDSFAQSRARRTENENVLVVEDLRGRLAETEARLARARAREAELSRRLEE 60

Query: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 97
          MKR VSVMEILE YLKR++ ++QE++V L S + +K
Sbjct: 61 MKRFVSVMEILETYLKRRFREQQEHLVHLFSSIPQK 96

[Close]
BLAST of Cucsa.103960 vs. TrEMBL
Match: M5WHI1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013876mg PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 8.9e-19
Identity = 57/93 (61.29%), Postives = 66/93 (70.97%), Query Frame = 1 

Query: 1  MCNGHHRPLFRGSLPPYQT-SVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLE 60
          MC G  RP  R +L P +   +P + AV V D LRGRL ETE RLA+ RAREAELSR L 
Sbjct: 1  MCYGQQRPFSRDNLTPTRVVRLPNDNAVVVAD-LRGRLAETEARLARARAREAELSRRLN 60

Query: 61 EMKRLVSVMEILENYLKRQYSDRQEYVVRLLSP 93
          EMKR VSVMEILE YLKR++ ++QEYV  L SP
Sbjct: 61 EMKRFVSVMEILETYLKRRFREQQEYVSDLFSP 92

[Close]
BLAST of Cucsa.103960 vs. TrEMBL
Match: B9T6T7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0270660 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.6e-18
Identity = 56/95 (58.95%), Postives = 64/95 (67.37%), Query Frame = 1 

Query: 1  MCNGHHRPLFRGSLPPYQTSVP----ENGAVSVVDNLRGRLEETELRLAQVRAREAELSR 60
          MC GH R L    L P +   P    EN   SVV++LR RL ETE RL + RAREAELSR
Sbjct: 1  MCYGHRRSLSPDDLIPSRNRRPQNDNENNNASVVEDLRDRLAETEARLERARAREAELSR 60

Query: 61 LLEEMKRLVSVMEILENYLKRQYSDRQEYVVRLLS 92
           LEEMKR VSVMEILE YLKR+Y ++QE+V R  S
Sbjct: 61 RLEEMKRFVSVMEILETYLKRRYREQQEHVARFFS 95

[Close]
BLAST of Cucsa.103960 vs. TAIR10
Match: AT5G65495.1 (AT5G65495.1 unknown protein)

HSP 1 Score: 89.0 bits (219), Expect = 1.8e-18
Identity = 50/96 (52.08%), Postives = 67/96 (69.79%), Query Frame = 1 

Query: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
          MC GH++ L   S    ++   E+   SVVD+LR RL ETE RL + RAREAELSR LE 
Sbjct: 1  MCYGHNQSLSSRSSLRRRSHDGEDD--SVVDDLRDRLAETEARLRRARAREAELSRRLEH 60

Query: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 97
          MKR VSVMEI+E +L+R++ ++++ + RL SPVS K
Sbjct: 61 MKRFVSVMEIIETFLERRFQEQKDRIARLFSPVSTK 94

[Close]
BLAST of Cucsa.103960 vs. NCBI nr
Match: gi|778718976|ref|XP_011657944.1| (PREDICTED: protein SKIP34 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 1.6e-45
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1 

Query: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
          MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 97
          MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96

[Close]
BLAST of Cucsa.103960 vs. NCBI nr
Match: gi|659079949|ref|XP_008440533.1| (PREDICTED: protein SKIP34 [Cucumis melo])

HSP 1 Score: 186.0 bits (471), Expect = 3.0e-44
Identity = 94/96 (97.92%), Postives = 94/96 (97.92%), Query Frame = 1 

Query: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
          MCNGHHRPLFRGS PPYQTSVPENGA SVVDNLRGRLEETELRLAQVRAREAELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 97
          MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96

[Close]
BLAST of Cucsa.103960 vs. NCBI nr
Match: gi|802673988|ref|XP_012081673.1| (PREDICTED: protein SKIP34 [Jatropha curcas])

HSP 1 Score: 107.1 bits (266), Expect = 1.8e-20
Identity = 58/96 (60.42%), Postives = 68/96 (70.83%), Query Frame = 1 

Query: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
          MC GH R L    L P +    EN   SVV++LRGRL ETE RL + RAREAELSR LEE
Sbjct: 1  MCYGHQRSLSPDDLIPSRNRRSENDNTSVVEDLRGRLAETEARLERARAREAELSRRLEE 60

Query: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 97
          MKR VSVMEILE+YLKR++ ++QE+V RL S V  K
Sbjct: 61 MKRFVSVMEILESYLKRRFREQQEHVARLFSSVPAK 96

[Close]
BLAST of Cucsa.103960 vs. NCBI nr
Match: gi|567867271|ref|XP_006426258.1| (hypothetical protein CICLE_v10026840mg [Citrus clementina])

HSP 1 Score: 102.8 bits (255), Expect = 3.4e-19
Identity = 55/96 (57.29%), Postives = 68/96 (70.83%), Query Frame = 1 

Query: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
          MC GH R +   S    +    EN  V VV++LRGRL ETE RLA+ RAREAELSR LEE
Sbjct: 1  MCYGHRRSVSPDSFAQSRARRTENENVLVVEDLRGRLAETEARLARARAREAELSRRLEE 60

Query: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 97
          MKR VSVMEILE YLKR++ ++QE++V L S + +K
Sbjct: 61 MKRFVSVMEILETYLKRRFREQQEHLVHLFSSIPQK 96

[Close]
BLAST of Cucsa.103960 vs. NCBI nr
Match: gi|595837742|ref|XP_007207514.1| (hypothetical protein PRUPE_ppa013876mg [Prunus persica])

HSP 1 Score: 100.9 bits (250), Expect = 1.3e-18
Identity = 57/93 (61.29%), Postives = 66/93 (70.97%), Query Frame = 1 

Query: 1  MCNGHHRPLFRGSLPPYQT-SVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLE 60
          MC G  RP  R +L P +   +P + AV V D LRGRL ETE RLA+ RAREAELSR L 
Sbjct: 1  MCYGQQRPFSRDNLTPTRVVRLPNDNAVVVAD-LRGRLAETEARLARARAREAELSRRLN 60

Query: 61 EMKRLVSVMEILENYLKRQYSDRQEYVVRLLSP 93
          EMKR VSVMEILE YLKR++ ++QEYV  L SP
Sbjct: 61 EMKRFVSVMEILETYLKRRFREQQEYVSDLFSP 92

The following BLAST results are available for this feature:
BLAST of Cucsa.103960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SKI34_ARATH3.2e-1752.08Protein SKIP34 OS=Arabidopsis thaliana GN=SKIP34 PE=1 SV=1[more]
BLAST of Cucsa.103960 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KIR5_CUCSA1.1e-45100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G498950 PE=4 SV=1[more]
A0A067K0P3_JATCU1.2e-2060.42Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18706 PE=4 SV=1[more]
V4RX85_9ROSI2.4e-1957.29Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026840mg PE=4 SV=1[more]
M5WHI1_PRUPE8.9e-1961.29Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013876mg PE=4 SV=1[more]
B9T6T7_RICCO2.6e-1858.95Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0270660 PE=4 SV=1[more]
BLAST of Cucsa.103960 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G65495.11.8e-1852.08 unknown protein[more]
BLAST of Cucsa.103960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778718976|ref|XP_011657944.1|1.6e-45100.00PREDICTED: protein SKIP34 [Cucumis sativus][more]
gi|659079949|ref|XP_008440533.1|3.0e-4497.92PREDICTED: protein SKIP34 [Cucumis melo][more]
gi|802673988|ref|XP_012081673.1|1.8e-2060.42PREDICTED: protein SKIP34 [Jatropha curcas][more]
gi|567867271|ref|XP_006426258.1|3.4e-1957.29hypothetical protein CICLE_v10026840mg [Citrus clementina][more]
gi|595837742|ref|XP_007207514.1|1.3e-1861.29hypothetical protein PRUPE_ppa013876mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.103960.1Cucsa.103960.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 30..64
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.103960Cla014100Watermelon (97103) v1cgywmB136
Cucsa.103960Csa6G498950Cucumber (Chinese Long) v2cgycuB121
Cucsa.103960MELO3C007710Melon (DHL92) v3.5.1cgymeB131
Cucsa.103960ClCG01G018330Watermelon (Charleston Gray)cgywcgB134
Cucsa.103960CSPI06G29760Wild cucumber (PI 183967)cgycpiB122
Cucsa.103960CmaCh03G008460Cucurbita maxima (Rimu)cgycmaB0231
Cucsa.103960CmaCh07G005770Cucurbita maxima (Rimu)cgycmaB0235
Cucsa.103960CmoCh03G008860Cucurbita moschata (Rifu)cgycmoB0227
Cucsa.103960Lsi01G008150Bottle gourd (USVL1VR-Ls)cgylsiB125
Cucsa.103960Cp4.1LG10g01580Cucurbita pepo (Zucchini)cgycpeB0211
Cucsa.103960Cp4.1LG19g10040Cucurbita pepo (Zucchini)cgycpeB0220
Cucsa.103960MELO3C032898.2Melon (DHL92) v3.6.1cgymedB131
Cucsa.103960CsaV3_6G044960Cucumber (Chinese Long) v3cgycucB126
Cucsa.103960Cla97C01G017660Watermelon (97103) v2cgywmbB127
Cucsa.103960Bhi03G001345Wax gourdcgywgoB154
Cucsa.103960Carg18488Silver-seed gourdcarcgyB0001
Cucsa.103960Carg00734Silver-seed gourdcarcgyB0467
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.103960Cucumber (Chinese Long) v3cgycucB118
Cucsa.103960Cucumber (Chinese Long) v3cgycucB122
Cucsa.103960Watermelon (97103) v2cgywmbB128
Cucsa.103960Watermelon (97103) v2cgywmbB135
Cucsa.103960Wax gourdcgywgoB157
Cucsa.103960Cucumber (Gy14) v1cgycgyB043
Cucsa.103960Cucumber (Gy14) v1cgycgyB047
Cucsa.103960Cucurbita maxima (Rimu)cgycmaB0222
Cucsa.103960Cucurbita maxima (Rimu)cgycmaB0223
Cucsa.103960Cucurbita maxima (Rimu)cgycmaB0225
Cucsa.103960Cucurbita maxima (Rimu)cgycmaB0233
Cucsa.103960Cucurbita moschata (Rifu)cgycmoB0216
Cucsa.103960Cucurbita moschata (Rifu)cgycmoB0218
Cucsa.103960Cucurbita moschata (Rifu)cgycmoB0229
Cucsa.103960Cucurbita moschata (Rifu)cgycmoB0230
Cucsa.103960Cucurbita moschata (Rifu)cgycmoB0233
Cucsa.103960Wild cucumber (PI 183967)cgycpiB116
Cucsa.103960Wild cucumber (PI 183967)cgycpiB120
Cucsa.103960Cucumber (Chinese Long) v2cgycuB114
Cucsa.103960Cucumber (Chinese Long) v2cgycuB119
Cucsa.103960Melon (DHL92) v3.5.1cgymeB127
Cucsa.103960Melon (DHL92) v3.5.1cgymeB129
Cucsa.103960Watermelon (Charleston Gray)cgywcgB133
Cucsa.103960Watermelon (Charleston Gray)cgywcgB140
Cucsa.103960Watermelon (97103) v1cgywmB134
Cucsa.103960Watermelon (97103) v1cgywmB141
Cucsa.103960Cucurbita pepo (Zucchini)cgycpeB0212
Cucsa.103960Cucurbita pepo (Zucchini)cgycpeB0219
Cucsa.103960Cucurbita pepo (Zucchini)cgycpeB0225
Cucsa.103960Cucurbita pepo (Zucchini)cgycpeB0228
Cucsa.103960Bottle gourd (USVL1VR-Ls)cgylsiB127
Cucsa.103960Bottle gourd (USVL1VR-Ls)cgylsiB131
Cucsa.103960Melon (DHL92) v3.6.1cgymedB126
Cucsa.103960Melon (DHL92) v3.6.1cgymedB128
Cucsa.103960Silver-seed gourdcarcgyB0065
Cucsa.103960Silver-seed gourdcarcgyB0706
Cucsa.103960Silver-seed gourdcarcgyB1058