CmaCh03G008460 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACCCAAGGAAACATGTGGTGGTGGCAGCTGGTCCACGTAGGGCGATAGATTTACACCCAAATTTCTCCTCTTTGATGTGCTGTTTGGTAACATTTTTTTCTTCTTCAGGAAGTTTCTATTGAAGTAGTAGTTTATGTTCTGTTAATCGTCTGTTCATATGTTATGGAATGAACTCGACATTCGTTTCTGGGTGCGTGTGTTTCTGAACCACGCTTTGTCTGGACTTTGTTTTAATGATCCAAGGAATGAGGTTTTAAAGTTGCAGAAAAATGAGTGGCGTTACAATTCCTTGCAACTATAGAGTCAGGAGTCCTCAGATGTAATAGCTTGATGATGACCAGTATGTTCCCAAGCTGATAAAGCTGAATCCTTTATCATCAAAATCCTTTTTCTTATTTCAAACTCCTAAATTAAGTAATAATGAAAGGGAAAGGGCAAAAGAGAGAAGCTTTTTTAAAATGTTTTTGGAGCTGACGAATACCTTCAACATCAAAGTTTGAATGCATCTCATCTTTTGCAGAGAGCAAGAAGTATATGGAACTGTGGCTTTCTTCTTCCCTGCAAATCTCGGAAACTTGACGTGCTTTTGGCGACGATGATGAAGGGCAGGTTCTCTGATTACCGCAAAGTTCATCGTCATCTTGAGCCGAAGTTTACAAATTAGACCAACTCAAGTCTTGTTTTGTGCATATCATGTAAACTTGGTAAGATATTTCGTTCCTATTTTGCATACATAATTTGATTGACAATCTGGAAATGGATGGAATGGAGATTTTCTTTCTTTTCTTCTTCCCTTTTTGTATACATTATAAGATAAACAATCCACATTCCAACTTCTACCATTTCATTTTTTCGTATTTCCTATAAATATTTATAAATGCAACATTATCCTTTTGTAACTCTCTGATTTATTTCTTAGTGGCTTGTTCATCATCACCTTCCAGCTCCTTATACTTTATAATTCAAATACAAAATAAAAAATTTGCATCTCCGATTGAAAATTAGAGAAACTCACGGCTTTGATCTGATTGTTTTTCACCTCATCAACGAAAACGCTCGAGCCGTCTATTTCCGAACAACCTAGAAATCCATCGATGCAATCCTTTCATCTCAGCGTTACATTCGCCTCATTTTCAAGGCATTGCAAGTCTGCAAACACGTGAGGGAGGTTTTCAAAATTGACTGTGAATTTCGATTGGAAAAAGATTCAATCACGGAGATTACTCGTTCTGGAAATGCTACCTGGAACTAATTTGGATTCGTCTGTTCCAGTAATGCAATGAGGAGGAGTGAAGATTCTGGCGAGTCTCGCCGACTCTTCCACCAGTTGAGAAATTTGTTTGTCTTGCTGTTTCGGACTCACAATCCAGTCAAATTAACGGAAGCACCAAACCTGACAGAGATCTTCTCCGTGATTAATCGAAATTTCGAGCTGGAATTACCTATATCTCAAGAGGTAATTTCTAGAGTAAGATGTGAATGAGAAGAACAAAAAGGAGCGAATGGAATTACCAAATTTCTAGCTCCGATGGACGACATTGATAAGGACGAGGCCGGTTTGACGTCACCGGACAAAACGAAAGGCTCTCGACTCACCGGAAGACGAGAGTCGGGGAGGGAGAGGACATTGGTGACGTTGAGACGACGCCTAATTGGGAGCTGTTTTTGTTTTGTTTGTTTTTTTTTCGATTCACTCAATAGATAATTTTCTTACAAAAACAAAATACGTCATTGTCTCTATCAATATCCAATCTTATTATTCTATTTAGGCAATCTTATTATTATATTTACTTTTGTAAGAAAGTAAGATTTCCAGACCTCAAAAGGCATCATATTCATCCAAAAACCGGTCCATCGCTGCAAGGCAACCACCCACCGATTGTTGAGTTTCAGTCTCCGCCATGTGTAACGGCCACCACCGATCTTTGTTCAGAGGTAGCATTTCTCCTAACCAGACCTCCGTACCGGAAAACGGCGACGCTTCCGTTGTGGACAATCTACGGGGTCGATTAGCGGAAACAGAGTCGCGGCTGGCTCAAGTTAGGGCTCGAGAGGCGGCGCTCAGCCGAATCTTGGAGGAAATGAAACGATTAGTTTCTGTGATGGAGATCCTCAAGAACTACCTGAAACGGCGGTACAGAGACCGCCAAGAATATGTGGTTCGTCTCCTCGCCCCTCTATCTAGAAAATAG ATGGACCCAAGGAAACATGTGGTGGTGGCAGCTGGTCCACGTAGGGCGATAGATTTACACCCAAATTTCTCCTCTTTGATGTGCTGTTTGAGAGCAAGAAGTATATGGAACTGTGGCTTTCTTCTTCCCTGCAAATCTCGGAAACTTGACGTGCTTTTGGCGACGATGATGAAGGGCAGGTTCTCTGATTACCGCAAAGTTCATCGTCATCTTGAGCCGAATAATGCAATGAGGAGGAGTGAAGATTCTGGCGAGTCTCGCCGACTCTTCCACCAGTTGAGAAATTTGTTTGTCTTGCTGTTTCGGACTCACAATCCAGTCAAATTAACGGAAGCACCAAACCTGACAGAGATCTTCTCCGTGATTAATCGAAATTTCGAGCTGGAATTACCTATATCTCAAGAGAAAGTAAGATTTCCAGACCTCAAAAGGCATCATATTCATCCAAAAACCGGTCCATCGCTGCAAGGCAACCACCCACCGATTGTTGAGTTTCAGTCTCCGCCATGTGTAACGGCCACCACCGATCTTTGTTCAGAGACCTCCGTACCGGAAAACGGCGACGCTTCCGTTGTGGACAATCTACGGGGTCGATTAGCGGAAACAGAGTCGCGGCTGGCTCAAGTTAGGGCTCGAGAGGCGGCGCTCAGCCGAATCTTGGAGGAAATGAAACGATTAGTTTCTGTGATGGAGATCCTCAAGAACTACCTGAAACGGCGGTACAGAGACCGCCAAGAATATGTGGTTCGTCTCCTCGCCCCTCTATCTAGAAAATAG ATGGACCCAAGGAAACATGTGGTGGTGGCAGCTGGTCCACGTAGGGCGATAGATTTACACCCAAATTTCTCCTCTTTGATGTGCTGTTTGAGAGCAAGAAGTATATGGAACTGTGGCTTTCTTCTTCCCTGCAAATCTCGGAAACTTGACGTGCTTTTGGCGACGATGATGAAGGGCAGGTTCTCTGATTACCGCAAAGTTCATCGTCATCTTGAGCCGAATAATGCAATGAGGAGGAGTGAAGATTCTGGCGAGTCTCGCCGACTCTTCCACCAGTTGAGAAATTTGTTTGTCTTGCTGTTTCGGACTCACAATCCAGTCAAATTAACGGAAGCACCAAACCTGACAGAGATCTTCTCCGTGATTAATCGAAATTTCGAGCTGGAATTACCTATATCTCAAGAGAAAGTAAGATTTCCAGACCTCAAAAGGCATCATATTCATCCAAAAACCGGTCCATCGCTGCAAGGCAACCACCCACCGATTGTTGAGTTTCAGTCTCCGCCATGTGTAACGGCCACCACCGATCTTTGTTCAGAGACCTCCGTACCGGAAAACGGCGACGCTTCCGTTGTGGACAATCTACGGGGTCGATTAGCGGAAACAGAGTCGCGGCTGGCTCAAGTTAGGGCTCGAGAGGCGGCGCTCAGCCGAATCTTGGAGGAAATGAAACGATTAGTTTCTGTGATGGAGATCCTCAAGAACTACCTGAAACGGCGGTACAGAGACCGCCAAGAATATGTGGTTCGTCTCCTCGCCCCTCTATCTAGAAAATAG MDPRKHVVVAAGPRRAIDLHPNFSSLMCCLRARSIWNCGFLLPCKSRKLDVLLATMMKGRFSDYRKVHRHLEPNNAMRRSEDSGESRRLFHQLRNLFVLLFRTHNPVKLTEAPNLTEIFSVINRNFELELPISQEKVRFPDLKRHHIHPKTGPSLQGNHPPIVEFQSPPCVTATTDLCSETSVPENGDASVVDNLRGRLAETESRLAQVRAREAALSRILEEMKRLVSVMEILKNYLKRRYRDRQEYVVRLLAPLSRK
BLAST of CmaCh03G008460 vs. Swiss-Prot
Match: SKI34_ARATH (Protein SKIP34 OS=Arabidopsis thaliana GN=SKIP34 PE=1 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 1.1e-13 Identity = 42/71 (59.15%), Postives = 58/71 (81.69%), Query Frame = 1
BLAST of CmaCh03G008460 vs. TrEMBL
Match: A0A0A0KIR5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G498950 PE=4 SV=1) HSP 1 Score: 125.6 bits (314), Expect = 9.0e-26 Identity = 72/102 (70.59%), Postives = 80/102 (78.43%), Query Frame = 1
BLAST of CmaCh03G008460 vs. TrEMBL
Match: W9SN91_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026774 PE=4 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 1.4e-15 Identity = 50/69 (72.46%), Postives = 60/69 (86.96%), Query Frame = 1
BLAST of CmaCh03G008460 vs. TrEMBL
Match: A0A067K0P3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18706 PE=4 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 5.5e-15 Identity = 49/74 (66.22%), Postives = 62/74 (83.78%), Query Frame = 1
BLAST of CmaCh03G008460 vs. TrEMBL
Match: A0A068TZ41_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00036662001 PE=4 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 7.2e-15 Identity = 49/73 (67.12%), Postives = 61/73 (83.56%), Query Frame = 1
BLAST of CmaCh03G008460 vs. TrEMBL
Match: B9T6T7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0270660 PE=4 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 9.4e-15 Identity = 49/71 (69.01%), Postives = 59/71 (83.10%), Query Frame = 1
BLAST of CmaCh03G008460 vs. TAIR10
Match: AT5G65495.1 (AT5G65495.1 unknown protein) HSP 1 Score: 78.6 bits (192), Expect = 6.4e-15 Identity = 42/71 (59.15%), Postives = 58/71 (81.69%), Query Frame = 1
BLAST of CmaCh03G008460 vs. NCBI nr
Match: gi|659079949|ref|XP_008440533.1| (PREDICTED: protein SKIP34 [Cucumis melo]) HSP 1 Score: 127.5 bits (319), Expect = 3.4e-26 Identity = 73/102 (71.57%), Postives = 81/102 (79.41%), Query Frame = 1
BLAST of CmaCh03G008460 vs. NCBI nr
Match: gi|778718976|ref|XP_011657944.1| (PREDICTED: protein SKIP34 [Cucumis sativus]) HSP 1 Score: 125.6 bits (314), Expect = 1.3e-25 Identity = 72/102 (70.59%), Postives = 80/102 (78.43%), Query Frame = 1
BLAST of CmaCh03G008460 vs. NCBI nr
Match: gi|703163797|ref|XP_010113440.1| (hypothetical protein L484_026774 [Morus notabilis]) HSP 1 Score: 91.7 bits (226), Expect = 2.1e-15 Identity = 50/69 (72.46%), Postives = 60/69 (86.96%), Query Frame = 1
BLAST of CmaCh03G008460 vs. NCBI nr
Match: gi|802673988|ref|XP_012081673.1| (PREDICTED: protein SKIP34 [Jatropha curcas]) HSP 1 Score: 89.7 bits (221), Expect = 7.9e-15 Identity = 49/74 (66.22%), Postives = 62/74 (83.78%), Query Frame = 1
BLAST of CmaCh03G008460 vs. NCBI nr
Match: gi|661894571|emb|CDP01570.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 89.4 bits (220), Expect = 1.0e-14 Identity = 49/73 (67.12%), Postives = 61/73 (83.56%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |