CmaCh07G005770 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh07G005770
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_7
LocationCma_Chr07 : 2498280 .. 2498564 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTAACGGCCACCGCCGATCTTCGTTTGGAGATAGCCTTTTCCCCTACCAAACCTCCGTACCGGAAAACGGCGATGCTTCTGTCGTGGATAATATACGGGGAAGATTGGCGGAAGCAGAGTCGCGACTGGCTGTAGTTCGGGCTCGGGAGGTGGAGCTCAGCCGCCTCTTGGAGGAAATGAAACGTTTAGTCTCTGTGATGGAGATTCTCGAGAACTACCTGAAACGGCAGTATCGTGACCGCCAAGAGTATGTGGTTCGTCTTCTCTCCCCTGTAGCTTGA

mRNA sequence

ATGTGTAACGGCCACCGCCGATCTTCGTTTGGAGATAGCCTTTTCCCCTACCAAACCTCCGTACCGGAAAACGGCGATGCTTCTGTCGTGGATAATATACGGGGAAGATTGGCGGAAGCAGAGTCGCGACTGGCTGTAGTTCGGGCTCGGGAGGTGGAGCTCAGCCGCCTCTTGGAGGAAATGAAACGTTTAGTCTCTGTGATGGAGATTCTCGAGAACTACCTGAAACGGCAGTATCGTGACCGCCAAGAGTATGTGGTTCGTCTTCTCTCCCCTGTAGCTTGA

Coding sequence (CDS)

ATGTGTAACGGCCACCGCCGATCTTCGTTTGGAGATAGCCTTTTCCCCTACCAAACCTCCGTACCGGAAAACGGCGATGCTTCTGTCGTGGATAATATACGGGGAAGATTGGCGGAAGCAGAGTCGCGACTGGCTGTAGTTCGGGCTCGGGAGGTGGAGCTCAGCCGCCTCTTGGAGGAAATGAAACGTTTAGTCTCTGTGATGGAGATTCTCGAGAACTACCTGAAACGGCAGTATCGTGACCGCCAAGAGTATGTGGTTCGTCTTCTCTCCCCTGTAGCTTGA

Protein sequence

MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVA
Homology
[Close]
BLAST of CmaCh07G005770 vs. Swiss-Prot
Match: SKI34_ARATH (Protein SKIP34 OS=Arabidopsis thaliana GN=SKIP34 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.4e-15
Identity = 47/94 (50.00%), Postives = 65/94 (69.15%), Query Frame = 1 

Query: 1  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEE 60
          MC GH +S    S    ++   E  D SVVD++R RLAE E+RL   RARE ELSR LE 
Sbjct: 1  MCYGHNQSLSSRSSLRRRSHDGE--DDSVVDDLRDRLAETEARLRRARAREAELSRRLEH 60

Query: 61 MKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVA 95
          MKR VSVMEI+E +L+R+++++++ + RL SPV+
Sbjct: 61 MKRFVSVMEIIETFLERRFQEQKDRIARLFSPVS 92

[Close]
BLAST of CmaCh07G005770 vs. TrEMBL
Match: A0A0A0KIR5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G498950 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 4.0e-32
Identity = 78/94 (82.98%), Postives = 80/94 (85.11%), Query Frame = 1 

Query: 1  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEE 60
          MCNGH R  F  SL PYQTSVPENG  SVVDN+RGRL E E RLA VRARE ELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVA 95
          MKRLVSVMEILENYLKRQY DRQEYVVRLLSPV+
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVS 94

[Close]
BLAST of CmaCh07G005770 vs. TrEMBL
Match: A0A067K0P3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18706 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.6e-20
Identity = 57/93 (61.29%), Postives = 70/93 (75.27%), Query Frame = 1 

Query: 1  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEE 60
          MC GH+RS   D L P +    EN + SVV+++RGRLAE E+RL   RARE ELSR LEE
Sbjct: 1  MCYGHQRSLSPDDLIPSRNRRSENDNTSVVEDLRGRLAETEARLERARAREAELSRRLEE 60

Query: 61 MKRLVSVMEILENYLKRQYRDRQEYVVRLLSPV 94
          MKR VSVMEILE+YLKR++R++QE+V RL S V
Sbjct: 61 MKRFVSVMEILESYLKRRFREQQEHVARLFSSV 93

[Close]
BLAST of CmaCh07G005770 vs. TrEMBL
Match: B9T6T7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0270660 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 6.6e-19
Identity = 58/95 (61.05%), Postives = 68/95 (71.58%), Query Frame = 1 

Query: 1  MCNGHRRSSFGDSLFPYQTSVP----ENGDASVVDNIRGRLAEAESRLAVVRAREVELSR 60
          MC GHRRS   D L P +   P    EN +ASVV+++R RLAE E+RL   RARE ELSR
Sbjct: 1  MCYGHRRSLSPDDLIPSRNRRPQNDNENNNASVVEDLRDRLAETEARLERARAREAELSR 60

Query: 61 LLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLS 92
           LEEMKR VSVMEILE YLKR+YR++QE+V R  S
Sbjct: 61 RLEEMKRFVSVMEILETYLKRRYREQQEHVARFFS 95

[Close]
BLAST of CmaCh07G005770 vs. TrEMBL
Match: V4RX85_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026840mg PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.9e-18
Identity = 55/93 (59.14%), Postives = 68/93 (73.12%), Query Frame = 1 

Query: 1  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEE 60
          MC GHRRS   DS    +    EN +  VV+++RGRLAE E+RLA  RARE ELSR LEE
Sbjct: 1  MCYGHRRSVSPDSFAQSRARRTENENVLVVEDLRGRLAETEARLARARAREAELSRRLEE 60

Query: 61 MKRLVSVMEILENYLKRQYRDRQEYVVRLLSPV 94
          MKR VSVMEILE YLKR++R++QE++V L S +
Sbjct: 61 MKRFVSVMEILETYLKRRFREQQEHLVHLFSSI 93

[Close]
BLAST of CmaCh07G005770 vs. TrEMBL
Match: W9SN91_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026774 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-17
Identity = 59/95 (62.11%), Postives = 70/95 (73.68%), Query Frame = 1 

Query: 1  MCNGHRRSSFGD-SLFPYQTSVPENGD-ASVVDNIRGRLAEAESRLAVVRAREVELSRLL 60
          MC G +RS  GD S  P +T+     D A+VV+N+RGRLAE E RLA  RARE ELSR L
Sbjct: 1  MCYGQQRSFPGDESQTPSRTARSAAADNAAVVENLRGRLAETEERLARARAREAELSRRL 60

Query: 61 EEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPV 94
          EEMKR VSVMEILE YLKR++R++QE V RL SP+
Sbjct: 61 EEMKRFVSVMEILETYLKRRFREQQEDVARLFSPL 95

[Close]
BLAST of CmaCh07G005770 vs. TAIR10
Match: AT5G65495.1 (AT5G65495.1 unknown protein)

HSP 1 Score: 81.3 bits (199), Expect = 3.6e-16
Identity = 47/94 (50.00%), Postives = 65/94 (69.15%), Query Frame = 1 

Query: 1  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEE 60
          MC GH +S    S    ++   E  D SVVD++R RLAE E+RL   RARE ELSR LE 
Sbjct: 1  MCYGHNQSLSSRSSLRRRSHDGE--DDSVVDDLRDRLAETEARLRRARAREAELSRRLEH 60

Query: 61 MKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVA 95
          MKR VSVMEI+E +L+R+++++++ + RL SPV+
Sbjct: 61 MKRFVSVMEIIETFLERRFQEQKDRIARLFSPVS 92

[Close]
BLAST of CmaCh07G005770 vs. NCBI nr
Match: gi|778718976|ref|XP_011657944.1| (PREDICTED: protein SKIP34 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 5.8e-32
Identity = 78/94 (82.98%), Postives = 80/94 (85.11%), Query Frame = 1 

Query: 1  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEE 60
          MCNGH R  F  SL PYQTSVPENG  SVVDN+RGRL E E RLA VRARE ELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVA 95
          MKRLVSVMEILENYLKRQY DRQEYVVRLLSPV+
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVS 94

[Close]
BLAST of CmaCh07G005770 vs. NCBI nr
Match: gi|659079949|ref|XP_008440533.1| (PREDICTED: protein SKIP34 [Cucumis melo])

HSP 1 Score: 144.1 bits (362), Expect = 1.3e-31
Identity = 78/94 (82.98%), Postives = 80/94 (85.11%), Query Frame = 1 

Query: 1  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEE 60
          MCNGH R  F  S  PYQTSVPENG ASVVDN+RGRL E E RLA VRARE ELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVA 95
          MKRLVSVMEILENYLKRQY DRQEYVVRLLSPV+
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVS 94

[Close]
BLAST of CmaCh07G005770 vs. NCBI nr
Match: gi|802673988|ref|XP_012081673.1| (PREDICTED: protein SKIP34 [Jatropha curcas])

HSP 1 Score: 105.1 bits (261), Expect = 6.6e-20
Identity = 57/93 (61.29%), Postives = 70/93 (75.27%), Query Frame = 1 

Query: 1  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEE 60
          MC GH+RS   D L P +    EN + SVV+++RGRLAE E+RL   RARE ELSR LEE
Sbjct: 1  MCYGHQRSLSPDDLIPSRNRRSENDNTSVVEDLRGRLAETEARLERARAREAELSRRLEE 60

Query: 61 MKRLVSVMEILENYLKRQYRDRQEYVVRLLSPV 94
          MKR VSVMEILE+YLKR++R++QE+V RL S V
Sbjct: 61 MKRFVSVMEILESYLKRRFREQQEHVARLFSSV 93

[Close]
BLAST of CmaCh07G005770 vs. NCBI nr
Match: gi|255586651|ref|XP_002533956.1| (PREDICTED: protein SKIP34 [Ricinus communis])

HSP 1 Score: 101.3 bits (251), Expect = 9.5e-19
Identity = 58/95 (61.05%), Postives = 68/95 (71.58%), Query Frame = 1 

Query: 1  MCNGHRRSSFGDSLFPYQTSVP----ENGDASVVDNIRGRLAEAESRLAVVRAREVELSR 60
          MC GHRRS   D L P +   P    EN +ASVV+++R RLAE E+RL   RARE ELSR
Sbjct: 1  MCYGHRRSLSPDDLIPSRNRRPQNDNENNNASVVEDLRDRLAETEARLERARAREAELSR 60

Query: 61 LLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLS 92
           LEEMKR VSVMEILE YLKR+YR++QE+V R  S
Sbjct: 61 RLEEMKRFVSVMEILETYLKRRYREQQEHVARFFS 95

[Close]
BLAST of CmaCh07G005770 vs. NCBI nr
Match: gi|567867271|ref|XP_006426258.1| (hypothetical protein CICLE_v10026840mg [Citrus clementina])

HSP 1 Score: 99.8 bits (247), Expect = 2.8e-18
Identity = 55/93 (59.14%), Postives = 68/93 (73.12%), Query Frame = 1 

Query: 1  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEE 60
          MC GHRRS   DS    +    EN +  VV+++RGRLAE E+RLA  RARE ELSR LEE
Sbjct: 1  MCYGHRRSVSPDSFAQSRARRTENENVLVVEDLRGRLAETEARLARARAREAELSRRLEE 60

Query: 61 MKRLVSVMEILENYLKRQYRDRQEYVVRLLSPV 94
          MKR VSVMEILE YLKR++R++QE++V L S +
Sbjct: 61 MKRFVSVMEILETYLKRRFREQQEHLVHLFSSI 93

The following BLAST results are available for this feature:
BLAST of CmaCh07G005770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SKI34_ARATH6.4e-1550.00Protein SKIP34 OS=Arabidopsis thaliana GN=SKIP34 PE=1 SV=1[more]
BLAST of CmaCh07G005770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KIR5_CUCSA4.0e-3282.98Uncharacterized protein OS=Cucumis sativus GN=Csa_6G498950 PE=4 SV=1[more]
A0A067K0P3_JATCU4.6e-2061.29Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18706 PE=4 SV=1[more]
B9T6T7_RICCO6.6e-1961.05Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0270660 PE=4 SV=1[more]
V4RX85_9ROSI1.9e-1859.14Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026840mg PE=4 SV=1[more]
W9SN91_9ROSA1.6e-1762.11Uncharacterized protein OS=Morus notabilis GN=L484_026774 PE=4 SV=1[more]
BLAST of CmaCh07G005770 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G65495.13.6e-1650.00 unknown protein[more]
BLAST of CmaCh07G005770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778718976|ref|XP_011657944.1|5.8e-3282.98PREDICTED: protein SKIP34 [Cucumis sativus][more]
gi|659079949|ref|XP_008440533.1|1.3e-3182.98PREDICTED: protein SKIP34 [Cucumis melo][more]
gi|802673988|ref|XP_012081673.1|6.6e-2061.29PREDICTED: protein SKIP34 [Jatropha curcas][more]
gi|255586651|ref|XP_002533956.1|9.5e-1961.05PREDICTED: protein SKIP34 [Ricinus communis][more]
gi|567867271|ref|XP_006426258.1|2.8e-1859.14hypothetical protein CICLE_v10026840mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh07G005770.1CmaCh07G005770.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 30..50
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh07G005770Cucsa.103960Cucumber (Gy14) v1cgycmaB0235
CmaCh07G005770Cla014100Watermelon (97103) v1cmawmB826
CmaCh07G005770Csa6G498950Cucumber (Chinese Long) v2cmacuB877
CmaCh07G005770MELO3C007710Melon (DHL92) v3.5.1cmameB809
CmaCh07G005770ClCG01G018330Watermelon (Charleston Gray)cmawcgB754
CmaCh07G005770CSPI06G29760Wild cucumber (PI 183967)cmacpiB893
CmaCh07G005770CmoCh03G008860Cucurbita moschata (Rifu)cmacmoB858
CmaCh07G005770Lsi01G008150Bottle gourd (USVL1VR-Ls)cmalsiB786
CmaCh07G005770Cp4.1LG19g10040Cucurbita pepo (Zucchini)cmacpeB880
CmaCh07G005770MELO3C032898.2Melon (DHL92) v3.6.1cmamedB907
CmaCh07G005770CsaV3_6G044960Cucumber (Chinese Long) v3cmacucB1035
CmaCh07G005770Cla97C01G017660Watermelon (97103) v2cmawmbB875
CmaCh07G005770Bhi03G001345Wax gourdcmawgoB1076
CmaCh07G005770Carg18488Silver-seed gourdcarcmaB0004
CmaCh07G005770Carg00734Silver-seed gourdcarcmaB0571
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh07G005770Cucumber (Chinese Long) v3cmacucB1008
CmaCh07G005770Watermelon (97103) v2cmawmbB905
CmaCh07G005770Watermelon (97103) v2cmawmbB908
CmaCh07G005770Cucurbita maxima (Rimu)cmacmaB207
CmaCh07G005770Cucurbita maxima (Rimu)cmacmaB523
CmaCh07G005770Cucurbita maxima (Rimu)cmacmaB546
CmaCh07G005770Cucurbita maxima (Rimu)cmacmaB552
CmaCh07G005770Cucumber (Gy14) v1cgycmaB0463
CmaCh07G005770Cucurbita moschata (Rifu)cmacmoB875
CmaCh07G005770Cucurbita moschata (Rifu)cmacmoB844
CmaCh07G005770Cucurbita moschata (Rifu)cmacmoB846
CmaCh07G005770Cucurbita moschata (Rifu)cmacmoB870
CmaCh07G005770Wild cucumber (PI 183967)cmacpiB867
CmaCh07G005770Cucumber (Chinese Long) v2cmacuB850
CmaCh07G005770Melon (DHL92) v3.5.1cmameB787
CmaCh07G005770Watermelon (Charleston Gray)cmawcgB775
CmaCh07G005770Watermelon (97103) v1cmawmB815
CmaCh07G005770Cucurbita pepo (Zucchini)cmacpeB866
CmaCh07G005770Cucurbita pepo (Zucchini)cmacpeB870
CmaCh07G005770Cucurbita pepo (Zucchini)cmacpeB876
CmaCh07G005770Cucurbita pepo (Zucchini)cmacpeB889
CmaCh07G005770Cucurbita pepo (Zucchini)cmacpeB891
CmaCh07G005770Bottle gourd (USVL1VR-Ls)cmalsiB807
CmaCh07G005770Cucumber (Gy14) v2cgybcmaB265
CmaCh07G005770Cucumber (Gy14) v2cgybcmaB861
CmaCh07G005770Melon (DHL92) v3.6.1cmamedB887
CmaCh07G005770Melon (DHL92) v3.6.1cmamedB890
CmaCh07G005770Silver-seed gourdcarcmaB0084
CmaCh07G005770Silver-seed gourdcarcmaB1289