CmoCh03G008860 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh03G008860
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionProtein SKIP34
LocationCmo_Chr03 : 6885800 .. 6886093 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTAACGGCCACCACCGATCTTTGTTCAGAGGTAGCATTTCTCCTAACCAGACCTCCGTACCGGAAAACGGCGGCGACGCTTCCGTTGTGGACAATCTACGGGGTCGATTAGCGGAAACAGAGTCGCGGCTGGCTCAAGTTAGGGCTCGAGAGGCGGCGCTCAGCCGACTCTTGGAGGAAATGAAACGATTAGTTTCTGTGATGGAGATCCTGGAGAACTACCTGAAACGGCGGTACAGCGACCGCCAAGAATATGTGGTTCGTCTCCTCGCCCCTGTATCTCGAAAATAG

mRNA sequence

ATGTGTAACGGCCACCACCGATCTTTGTTCAGAGGTAGCATTTCTCCTAACCAGACCTCCGTACCGGAAAACGGCGGCGACGCTTCCGTTGTGGACAATCTACGGGGTCGATTAGCGGAAACAGAGTCGCGGCTGGCTCAAGTTAGGGCTCGAGAGGCGGCGCTCAGCCGACTCTTGGAGGAAATGAAACGATTAGTTTCTGTGATGGAGATCCTGGAGAACTACCTGAAACGGCGGTACAGCGACCGCCAAGAATATGTGGTTCGTCTCCTCGCCCCTGTATCTCGAAAATAG

Coding sequence (CDS)

ATGTGTAACGGCCACCACCGATCTTTGTTCAGAGGTAGCATTTCTCCTAACCAGACCTCCGTACCGGAAAACGGCGGCGACGCTTCCGTTGTGGACAATCTACGGGGTCGATTAGCGGAAACAGAGTCGCGGCTGGCTCAAGTTAGGGCTCGAGAGGCGGCGCTCAGCCGACTCTTGGAGGAAATGAAACGATTAGTTTCTGTGATGGAGATCCTGGAGAACTACCTGAAACGGCGGTACAGCGACCGCCAAGAATATGTGGTTCGTCTCCTCGCCCCTGTATCTCGAAAATAG
Homology
[Close]
BLAST of CmoCh03G008860 vs. Swiss-Prot
Match: SKI34_ARATH (Protein SKIP34 OS=Arabidopsis thaliana GN=SKIP34 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-17
Identity = 52/97 (53.61%), Postives = 70/97 (72.16%), Query Frame = 1 

Query: 1  MCNGHHRSLFRGSISPNQTSVPENGGDASVVDNLRGRLAETESRLAQVRAREAALSRLLE 60
          MC GH++SL   S    ++    +G D SVVD+LR RLAETE+RL + RAREA LSR LE
Sbjct: 1  MCYGHNQSLSSRSSLRRRS---HDGEDDSVVDDLRDRLAETEARLRRARAREAELSRRLE 60

Query: 61 EMKRLVSVMEILENYLKRRYSDRQEYVVRLLAPVSRK 98
           MKR VSVMEI+E +L+RR+ ++++ + RL +PVS K
Sbjct: 61 HMKRFVSVMEIIETFLERRFQEQKDRIARLFSPVSTK 94

[Close]
BLAST of CmoCh03G008860 vs. TrEMBL
Match: A0A0A0KIR5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G498950 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.4e-35
Identity = 85/97 (87.63%), Postives = 88/97 (90.72%), Query Frame = 1 

Query: 1  MCNGHHRSLFRGSISPNQTSVPENGGDASVVDNLRGRLAETESRLAQVRAREAALSRLLE 60
          MCNGHHR LFRGS+ P QTSVPENG   SVVDNLRGRL ETE RLAQVRAREA LSRLLE
Sbjct: 1  MCNGHHRPLFRGSLPPYQTSVPENGA-VSVVDNLRGRLEETELRLAQVRAREAELSRLLE 60

Query: 61 EMKRLVSVMEILENYLKRRYSDRQEYVVRLLAPVSRK 98
          EMKRLVSVMEILENYLKR+YSDRQEYVVRLL+PVSRK
Sbjct: 61 EMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96

[Close]
BLAST of CmoCh03G008860 vs. TrEMBL
Match: A0A067K0P3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18706 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 5.2e-19
Identity = 58/97 (59.79%), Postives = 72/97 (74.23%), Query Frame = 1 

Query: 1  MCNGHHRSLFRGSISPNQTSVPENGGDASVVDNLRGRLAETESRLAQVRAREAALSRLLE 60
          MC GH RSL    + P++    EN  + SVV++LRGRLAETE+RL + RAREA LSR LE
Sbjct: 1  MCYGHQRSLSPDDLIPSRNRRSEND-NTSVVEDLRGRLAETEARLERARAREAELSRRLE 60

Query: 61 EMKRLVSVMEILENYLKRRYSDRQEYVVRLLAPVSRK 98
          EMKR VSVMEILE+YLKRR+ ++QE+V RL + V  K
Sbjct: 61 EMKRFVSVMEILESYLKRRFREQQEHVARLFSSVPAK 96

[Close]
BLAST of CmoCh03G008860 vs. TrEMBL
Match: B9T6T7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0270660 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.4e-18
Identity = 56/95 (58.95%), Postives = 69/95 (72.63%), Query Frame = 1 

Query: 1  MCNGHHRSLFRGSISPNQTSVPENGGD---ASVVDNLRGRLAETESRLAQVRAREAALSR 60
          MC GH RSL    + P++   P+N  +   ASVV++LR RLAETE+RL + RAREA LSR
Sbjct: 1  MCYGHRRSLSPDDLIPSRNRRPQNDNENNNASVVEDLRDRLAETEARLERARAREAELSR 60

Query: 61 LLEEMKRLVSVMEILENYLKRRYSDRQEYVVRLLA 93
           LEEMKR VSVMEILE YLKRRY ++QE+V R  +
Sbjct: 61 RLEEMKRFVSVMEILETYLKRRYREQQEHVARFFS 95

[Close]
BLAST of CmoCh03G008860 vs. TrEMBL
Match: W9SN91_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026774 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.4e-18
Identity = 59/97 (60.82%), Postives = 73/97 (75.26%), Query Frame = 1 

Query: 1  MCNGHHRSLFRG--SISPNQTSVPENGGDASVVDNLRGRLAETESRLAQVRAREAALSRL 60
          MC G  RS F G  S +P++T+      +A+VV+NLRGRLAETE RLA+ RAREA LSR 
Sbjct: 1  MCYGQQRS-FPGDESQTPSRTARSAAADNAAVVENLRGRLAETEERLARARAREAELSRR 60

Query: 61 LEEMKRLVSVMEILENYLKRRYSDRQEYVVRLLAPVS 96
          LEEMKR VSVMEILE YLKRR+ ++QE V RL +P++
Sbjct: 61 LEEMKRFVSVMEILETYLKRRFREQQEDVARLFSPLT 96

[Close]
BLAST of CmoCh03G008860 vs. TrEMBL
Match: V4RX85_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026840mg PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-17
Identity = 55/97 (56.70%), Postives = 72/97 (74.23%), Query Frame = 1 

Query: 1  MCNGHHRSLFRGSISPNQTSVPENGGDASVVDNLRGRLAETESRLAQVRAREAALSRLLE 60
          MC GH RS+   S + ++    EN  +  VV++LRGRLAETE+RLA+ RAREA LSR LE
Sbjct: 1  MCYGHRRSVSPDSFAQSRARRTENE-NVLVVEDLRGRLAETEARLARARAREAELSRRLE 60

Query: 61 EMKRLVSVMEILENYLKRRYSDRQEYVVRLLAPVSRK 98
          EMKR VSVMEILE YLKRR+ ++QE++V L + + +K
Sbjct: 61 EMKRFVSVMEILETYLKRRFREQQEHLVHLFSSIPQK 96

[Close]
BLAST of CmoCh03G008860 vs. TAIR10
Match: AT5G65495.1 (AT5G65495.1 unknown protein)

HSP 1 Score: 90.5 bits (223), Expect = 6.1e-19
Identity = 52/97 (53.61%), Postives = 70/97 (72.16%), Query Frame = 1 

Query: 1  MCNGHHRSLFRGSISPNQTSVPENGGDASVVDNLRGRLAETESRLAQVRAREAALSRLLE 60
          MC GH++SL   S    ++    +G D SVVD+LR RLAETE+RL + RAREA LSR LE
Sbjct: 1  MCYGHNQSLSSRSSLRRRS---HDGEDDSVVDDLRDRLAETEARLRRARAREAELSRRLE 60

Query: 61 EMKRLVSVMEILENYLKRRYSDRQEYVVRLLAPVSRK 98
           MKR VSVMEI+E +L+RR+ ++++ + RL +PVS K
Sbjct: 61 HMKRFVSVMEIIETFLERRFQEQKDRIARLFSPVSTK 94

[Close]
BLAST of CmoCh03G008860 vs. NCBI nr
Match: gi|778718976|ref|XP_011657944.1| (PREDICTED: protein SKIP34 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 2.0e-35
Identity = 85/97 (87.63%), Postives = 88/97 (90.72%), Query Frame = 1 

Query: 1  MCNGHHRSLFRGSISPNQTSVPENGGDASVVDNLRGRLAETESRLAQVRAREAALSRLLE 60
          MCNGHHR LFRGS+ P QTSVPENG   SVVDNLRGRL ETE RLAQVRAREA LSRLLE
Sbjct: 1  MCNGHHRPLFRGSLPPYQTSVPENGA-VSVVDNLRGRLEETELRLAQVRAREAELSRLLE 60

Query: 61 EMKRLVSVMEILENYLKRRYSDRQEYVVRLLAPVSRK 98
          EMKRLVSVMEILENYLKR+YSDRQEYVVRLL+PVSRK
Sbjct: 61 EMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96

[Close]
BLAST of CmoCh03G008860 vs. NCBI nr
Match: gi|659079949|ref|XP_008440533.1| (PREDICTED: protein SKIP34 [Cucumis melo])

HSP 1 Score: 156.4 bits (394), Expect = 2.6e-35
Identity = 86/97 (88.66%), Postives = 88/97 (90.72%), Query Frame = 1 

Query: 1  MCNGHHRSLFRGSISPNQTSVPENGGDASVVDNLRGRLAETESRLAQVRAREAALSRLLE 60
          MCNGHHR LFRGS  P QTSVPENG  ASVVDNLRGRL ETE RLAQVRAREA LSRLLE
Sbjct: 1  MCNGHHRPLFRGSPPPYQTSVPENGA-ASVVDNLRGRLEETELRLAQVRAREAELSRLLE 60

Query: 61 EMKRLVSVMEILENYLKRRYSDRQEYVVRLLAPVSRK 98
          EMKRLVSVMEILENYLKR+YSDRQEYVVRLL+PVSRK
Sbjct: 61 EMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96

[Close]
BLAST of CmoCh03G008860 vs. NCBI nr
Match: gi|802673988|ref|XP_012081673.1| (PREDICTED: protein SKIP34 [Jatropha curcas])

HSP 1 Score: 101.7 bits (252), Expect = 7.5e-19
Identity = 58/97 (59.79%), Postives = 72/97 (74.23%), Query Frame = 1 

Query: 1  MCNGHHRSLFRGSISPNQTSVPENGGDASVVDNLRGRLAETESRLAQVRAREAALSRLLE 60
          MC GH RSL    + P++    EN  + SVV++LRGRLAETE+RL + RAREA LSR LE
Sbjct: 1  MCYGHQRSLSPDDLIPSRNRRSEND-NTSVVEDLRGRLAETEARLERARAREAELSRRLE 60

Query: 61 EMKRLVSVMEILENYLKRRYSDRQEYVVRLLAPVSRK 98
          EMKR VSVMEILE+YLKRR+ ++QE+V RL + V  K
Sbjct: 61 EMKRFVSVMEILESYLKRRFREQQEHVARLFSSVPAK 96

[Close]
BLAST of CmoCh03G008860 vs. NCBI nr
Match: gi|255586651|ref|XP_002533956.1| (PREDICTED: protein SKIP34 [Ricinus communis])

HSP 1 Score: 99.0 bits (245), Expect = 4.9e-18
Identity = 56/95 (58.95%), Postives = 69/95 (72.63%), Query Frame = 1 

Query: 1  MCNGHHRSLFRGSISPNQTSVPENGGD---ASVVDNLRGRLAETESRLAQVRAREAALSR 60
          MC GH RSL    + P++   P+N  +   ASVV++LR RLAETE+RL + RAREA LSR
Sbjct: 1  MCYGHRRSLSPDDLIPSRNRRPQNDNENNNASVVEDLRDRLAETEARLERARAREAELSR 60

Query: 61 LLEEMKRLVSVMEILENYLKRRYSDRQEYVVRLLA 93
           LEEMKR VSVMEILE YLKRRY ++QE+V R  +
Sbjct: 61 RLEEMKRFVSVMEILETYLKRRYREQQEHVARFFS 95

[Close]
BLAST of CmoCh03G008860 vs. NCBI nr
Match: gi|703163797|ref|XP_010113440.1| (hypothetical protein L484_026774 [Morus notabilis])

HSP 1 Score: 98.6 bits (244), Expect = 6.4e-18
Identity = 59/97 (60.82%), Postives = 73/97 (75.26%), Query Frame = 1 

Query: 1  MCNGHHRSLFRG--SISPNQTSVPENGGDASVVDNLRGRLAETESRLAQVRAREAALSRL 60
          MC G  RS F G  S +P++T+      +A+VV+NLRGRLAETE RLA+ RAREA LSR 
Sbjct: 1  MCYGQQRS-FPGDESQTPSRTARSAAADNAAVVENLRGRLAETEERLARARAREAELSRR 60

Query: 61 LEEMKRLVSVMEILENYLKRRYSDRQEYVVRLLAPVS 96
          LEEMKR VSVMEILE YLKRR+ ++QE V RL +P++
Sbjct: 61 LEEMKRFVSVMEILETYLKRRFREQQEDVARLFSPLT 96

The following BLAST results are available for this feature:
BLAST of CmoCh03G008860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SKI34_ARATH1.1e-1753.61Protein SKIP34 OS=Arabidopsis thaliana GN=SKIP34 PE=1 SV=1[more]
BLAST of CmoCh03G008860 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KIR5_CUCSA1.4e-3587.63Uncharacterized protein OS=Cucumis sativus GN=Csa_6G498950 PE=4 SV=1[more]
A0A067K0P3_JATCU5.2e-1959.79Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18706 PE=4 SV=1[more]
B9T6T7_RICCO3.4e-1858.95Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0270660 PE=4 SV=1[more]
W9SN91_9ROSA4.4e-1860.82Uncharacterized protein OS=Morus notabilis GN=L484_026774 PE=4 SV=1[more]
V4RX85_9ROSI1.3e-1756.70Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026840mg PE=4 SV=1[more]
BLAST of CmoCh03G008860 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G65495.16.1e-1953.61 unknown protein[more]
BLAST of CmoCh03G008860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778718976|ref|XP_011657944.1|2.0e-3587.63PREDICTED: protein SKIP34 [Cucumis sativus][more]
gi|659079949|ref|XP_008440533.1|2.6e-3588.66PREDICTED: protein SKIP34 [Cucumis melo][more]
gi|802673988|ref|XP_012081673.1|7.5e-1959.79PREDICTED: protein SKIP34 [Jatropha curcas][more]
gi|255586651|ref|XP_002533956.1|4.9e-1858.95PREDICTED: protein SKIP34 [Ricinus communis][more]
gi|703163797|ref|XP_010113440.1|6.4e-1860.82hypothetical protein L484_026774 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G008860.1CmoCh03G008860.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 31..65
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh03G008860Cucsa.103960Cucumber (Gy14) v1cgycmoB0227
CmoCh03G008860CmaCh07G005770Cucurbita maxima (Rimu)cmacmoB858
CmoCh03G008860Cla014100Watermelon (97103) v1cmowmB623
CmoCh03G008860Csa6G498950Cucumber (Chinese Long) v2cmocuB670
CmoCh03G008860MELO3C007710Melon (DHL92) v3.5.1cmomeB605
CmoCh03G008860ClCG01G018330Watermelon (Charleston Gray)cmowcgB575
CmoCh03G008860CSPI06G29760Wild cucumber (PI 183967)cmocpiB681
CmoCh03G008860Lsi01G008150Bottle gourd (USVL1VR-Ls)cmolsiB582
CmoCh03G008860Cp4.1LG19g10040Cucurbita pepo (Zucchini)cmocpeB624
CmoCh03G008860MELO3C032898.2Melon (DHL92) v3.6.1cmomedB694
CmoCh03G008860CsaV3_6G044960Cucumber (Chinese Long) v3cmocucB0793
CmoCh03G008860Cla97C01G017660Watermelon (97103) v2cmowmbB642
CmoCh03G008860Bhi03G001345Wax gourdcmowgoB0800
CmoCh03G008860Carg18488Silver-seed gourdcarcmoB0004
CmoCh03G008860Carg00734Silver-seed gourdcarcmoB0551
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh03G008860Cucurbita pepo (Zucchini)cmocpeB639
CmoCh03G008860Cucurbita pepo (Zucchini)cmocpeB606
CmoCh03G008860Cucurbita pepo (Zucchini)cmocpeB607
CmoCh03G008860Cucurbita pepo (Zucchini)cmocpeB613
CmoCh03G008860Cucurbita pepo (Zucchini)cmocpeB640
CmoCh03G008860Bottle gourd (USVL1VR-Ls)cmolsiB602
CmoCh03G008860Bottle gourd (USVL1VR-Ls)cmolsiB607
CmoCh03G008860Cucumber (Gy14) v2cgybcmoB227
CmoCh03G008860Cucumber (Gy14) v2cgybcmoB381
CmoCh03G008860Cucumber (Gy14) v2cgybcmoB811
CmoCh03G008860Melon (DHL92) v3.6.1cmomedB673
CmoCh03G008860Melon (DHL92) v3.6.1cmomedB679
CmoCh03G008860Silver-seed gourdcarcmoB0086
CmoCh03G008860Cucumber (Chinese Long) v3cmocucB0762
CmoCh03G008860Cucumber (Chinese Long) v3cmocucB0770
CmoCh03G008860Watermelon (97103) v2cmowmbB672
CmoCh03G008860Wax gourdcmowgoB0792
CmoCh03G008860Wax gourdcmowgoB0808
CmoCh03G008860Cucurbita moschata (Rifu)cmocmoB145
CmoCh03G008860Cucurbita moschata (Rifu)cmocmoB451
CmoCh03G008860Cucurbita moschata (Rifu)cmocmoB452
CmoCh03G008860Cucurbita moschata (Rifu)cmocmoB455
CmoCh03G008860Cucumber (Gy14) v1cgycmoB0459
CmoCh03G008860Cucurbita maxima (Rimu)cmacmoB187
CmoCh03G008860Cucurbita maxima (Rimu)cmacmoB653
CmoCh03G008860Cucurbita maxima (Rimu)cmacmoB727
CmoCh03G008860Cucurbita maxima (Rimu)cmacmoB784
CmoCh03G008860Wild cucumber (PI 183967)cmocpiB651
CmoCh03G008860Cucumber (Chinese Long) v2cmocuB639
CmoCh03G008860Melon (DHL92) v3.5.1cmomeB587
CmoCh03G008860Watermelon (Charleston Gray)cmowcgB600
CmoCh03G008860Watermelon (97103) v1cmowmB609