Cucsa.101090 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.101090
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionProtein IDA-LIKE 2
Locationscaffold00927 : 369087 .. 369411 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAAGATCAAGATCAAGATCAAAATCAAGATCGAGAAAGAAGGTTATTAGTTGGATGATGTTGTTAATAATAATGTTATTGATGAATGAAGAAGATGAGTTATTGATGATTTGCTGCAATGCTTCTTCACCAATTGCTACCAACAAACAACAACAGCAACAACAACAACAAGAATCTGCGTTGGTCAAATTGAAGCCTAAAAATGGTAATAATTATTATTACGGCCATTTCTTtGGTTTCTTGCCTAGAAGAATCCCCATTCCTGCCTCTGGTCCTTCAAGAAAACACAATGATATTGGCTTAAGAAGTTGGAGATCCCCTTGA

mRNA sequence

AAGAAGATCAAGATCAAGATCAAAATCAAGATCGAGAAAGAAGGTTATTAGTTGGATGATGTTGTTAATAATAATGTTATTGATGAATGAAGAAGATGAGTTATTGATGATTTGCTGCAATGCTTCTTCACCAATTGCTACCAACAaacaacaacagcaacaacaacaacaaGAATCTGCGTTGGTCAAATTGAAGCCTAAAAATGGTAATAATTATTATTACGGCCATTTCTTTGGTTTCTTGCCTAGAAGAATCCCCATTCCTGCCTCTGGTCCTTCAAGAAAACACAATGATATTGGCTTAAGAAGTTGGAGATCCCCTTGA

Coding sequence (CDS)

AAGAAGATCAAGATCAAGATCAAAATCAAGATCGAGAAAGAAGGTTATTAGTTGGATGATGTTGTTAATAATAATGTTATTGATGAATGAAGAAGATGAGTTATTGATGATTTGCTGCAATGCTTCTTCACCAATTGCTACCAACAAACAACAACAGCAACAACAACAACAAGAATCTGCGTTGGTCAAATTGAAGCCTAAAAATGGTAATAATTATTATTACGGCCATTTCTTtGGTTTCTTGCCTAGAAGAATCCCCATTCCTGCCTCTGGTCCTTCAAGAAAACACAATGATATTGGCTTAAGAAGTTGGAGATCCCCTTGA

Protein sequence

RRSRSRSKSRSRKKVISWMMLLIIMLLMNEEDELLMICCNASSPIATNKQQQQQQQQESALVKLKPKNGNNYYYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP*
Homology
[Close]
BLAST of Cucsa.101090 vs. Swiss-Prot
Match: IDL4_ARATH (Protein IDA-LIKE 4 OS=Arabidopsis thaliana GN=IDL4 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.7e-08
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1 

Query: 68  NGNNYYYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 108
           + N    GHF GFLPR +P+PAS PSRKHNDIG+++  SP
Sbjct: 54  SNNTVRRGHFLGFLPRHLPVPASAPSRKHNDIGIQALLSP 93

[Close]
BLAST of Cucsa.101090 vs. Swiss-Prot
Match: IDL2_ARATH (Protein IDA-LIKE 2 OS=Arabidopsis thaliana GN=IDL2 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-07
Identity = 38/104 (36.54%), Postives = 50/104 (48.08%), Query Frame = 1 

Query: 1   RRSRSRSKSRSRKKVISWMMLLIIMLLMNEEDELLMICCNASSPIATNKQQQQQQQQESA 60
           R  RSR  S       +  +LL+++LL+          CN +    TN    +  ++ + 
Sbjct: 4   RNQRSRITSSFFVSFFTRTILLLLILLLG--------FCNGART-NTNVFNSKPHKKHND 63

Query: 61  LVKLKPKNGNNYYYGHFFGFLPRRIPIPASGPSRKHNDIGLRSW 105
            V    K         F GFLPR  P+PASGPSRKHNDIGL SW
Sbjct: 64  AVSSSTKQ--------FLGFLPRHFPVPASGPSRKHNDIGLLSW 90

[Close]
BLAST of Cucsa.101090 vs. Swiss-Prot
Match: IDL3_ARATH (Protein IDA-LIKE 3 OS=Arabidopsis thaliana GN=IDL3 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.6e-07
Identity = 34/106 (32.08%), Postives = 55/106 (51.89%), Query Frame = 1 

Query: 5   SRSKSRSRKKVISWMMLLIIMLLMNEEDELLMICCNASSPIATNKQQQQQQQQESALVKL 64
           S    RSRK  ++  + ++++LL+      L+ CCN +    TN        ++  +V  
Sbjct: 2   SSRSHRSRKYQLTRTIPILVLLLV------LLSCCNGAR--TTNVFNTSSPPKQKDVVSP 61

Query: 65  KPKNGNNYYYGH----FFGFLPRRIPIPASGPSRKHNDIGLRSWRS 107
              + ++    H    F G LPR+ P+P SGPSRKHN+IGL S ++
Sbjct: 62  PHDHVHHQVQDHKSVQFLGSLPRQFPVPTSGPSRKHNEIGLSSTKT 99

[Close]
BLAST of Cucsa.101090 vs. TrEMBL
Match: A0A0A0KFQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G484020 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.4e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1 

Query: 19  MMLLIIMLLMNEEDELLMICCNASSPIATNKQQQQQQQQESALVKLKPKNGNNYYYGHFF 78
           MMLLIIMLLMNEEDELLMICCNASSPIATNKQQQQQQQQESALVKLKPKNGNNYYYGHFF
Sbjct: 1   MMLLIIMLLMNEEDELLMICCNASSPIATNKQQQQQQQQESALVKLKPKNGNNYYYGHFF 60

Query: 79  GFLPRRIPIPASGPSRKHNDIGLRSWRSP 108
           GFLPRRIPIPASGPSRKHNDIGLRSWRSP
Sbjct: 61  GFLPRRIPIPASGPSRKHNDIGLRSWRSP 89

[Close]
BLAST of Cucsa.101090 vs. TrEMBL
Match: M5W2Q5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025503mg PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-11
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 1 

Query: 63  KLKPKNGNNYYYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 108
           KLKPK  ++   GHF GFLPRRIPIPASGPSRKHNDIGLRSWRSP
Sbjct: 36  KLKPKYQHS---GHFSGFLPRRIPIPASGPSRKHNDIGLRSWRSP 77

[Close]
BLAST of Cucsa.101090 vs. TrEMBL
Match: A0A0D2SF39_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G064600 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.6e-11
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 1 

Query: 63  KLKPKNGNNYYYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 108
           K+KPK     Y GHF GFLPRR PIPASGPSRKHND+GL+SWRSP
Sbjct: 36  KIKPKP---QYEGHFLGFLPRRFPIPASGPSRKHNDLGLQSWRSP 77

[Close]
BLAST of Cucsa.101090 vs. TrEMBL
Match: A0A151TLA3_CAJCA (Protein IDA-LIKE 2 OS=Cajanus cajan GN=KK1_024188 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.0e-10
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 1 

Query: 63  KLKPKNGNNYYYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 108
           K +PK+    ++GHFFGFLP+R+PIP S PSRKHNDIGLRSWRSP
Sbjct: 34  KFRPKS---QHHGHFFGFLPKRMPIPYSTPSRKHNDIGLRSWRSP 75

[Close]
BLAST of Cucsa.101090 vs. TrEMBL
Match: A0A0B2RB07_GLYSO (Protein IDA-LIKE 4 OS=Glycine soja GN=glysoja_008493 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-09
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 1 

Query: 59  SALVKLKPKNGNNYYYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 108
           + + K KPK+    ++GHF GFLP+R+PIP S PSRKHNDIGLRSWRSP
Sbjct: 7   TTVFKFKPKS---QHHGHFSGFLPKRMPIPYSTPSRKHNDIGLRSWRSP 52

[Close]
BLAST of Cucsa.101090 vs. TAIR10
Match: AT3G18715.1 (AT3G18715.1 inflorescence deficient in abscission (IDA)-like 4)

HSP 1 Score: 58.2 bits (139), Expect = 3.7e-09
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1 

Query: 68  NGNNYYYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 108
           + N    GHF GFLPR +P+PAS PSRKHNDIG+++  SP
Sbjct: 54  SNNTVRRGHFLGFLPRHLPVPASAPSRKHNDIGIQALLSP 93

[Close]
BLAST of Cucsa.101090 vs. TAIR10
Match: AT5G64667.1 (AT5G64667.1 inflorescence deficient in abscission (IDA)-like 2)

HSP 1 Score: 57.4 bits (137), Expect = 6.4e-09
Identity = 38/104 (36.54%), Postives = 50/104 (48.08%), Query Frame = 1 

Query: 1   RRSRSRSKSRSRKKVISWMMLLIIMLLMNEEDELLMICCNASSPIATNKQQQQQQQQESA 60
           R  RSR  S       +  +LL+++LL+          CN +    TN    +  ++ + 
Sbjct: 4   RNQRSRITSSFFVSFFTRTILLLLILLLG--------FCNGART-NTNVFNSKPHKKHND 63

Query: 61  LVKLKPKNGNNYYYGHFFGFLPRRIPIPASGPSRKHNDIGLRSW 105
            V    K         F GFLPR  P+PASGPSRKHNDIGL SW
Sbjct: 64  AVSSSTKQ--------FLGFLPRHFPVPASGPSRKHNDIGLLSW 90

[Close]
BLAST of Cucsa.101090 vs. TAIR10
Match: AT5G09805.1 (AT5G09805.1 inflorescence deficient in abscission (IDA)-like 3)

HSP 1 Score: 54.3 bits (129), Expect = 5.4e-08
Identity = 34/106 (32.08%), Postives = 55/106 (51.89%), Query Frame = 1 

Query: 5   SRSKSRSRKKVISWMMLLIIMLLMNEEDELLMICCNASSPIATNKQQQQQQQQESALVKL 64
           S    RSRK  ++  + ++++LL+      L+ CCN +    TN        ++  +V  
Sbjct: 2   SSRSHRSRKYQLTRTIPILVLLLV------LLSCCNGAR--TTNVFNTSSPPKQKDVVSP 61

Query: 65  KPKNGNNYYYGH----FFGFLPRRIPIPASGPSRKHNDIGLRSWRS 107
              + ++    H    F G LPR+ P+P SGPSRKHN+IGL S ++
Sbjct: 62  PHDHVHHQVQDHKSVQFLGSLPRQFPVPTSGPSRKHNEIGLSSTKT 99

[Close]
BLAST of Cucsa.101090 vs. NCBI nr
Match: gi|659080869|ref|XP_008441023.1| (PREDICTED: protein IDA-LIKE 2-like [Cucumis melo])

HSP 1 Score: 218.8 bits (556), Expect = 4.7e-54
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 1 

Query: 1   RRSRSRSKSRSRKKVISWMMLLIIMLLMNEEDELLMICCNASSPIATNKQQQQQQQQESA 60
           RRSRSRSKSRSRKKVISWMMLLIIMLLMNEEDELLMICCNASSPIATNKQQQQQQQQESA
Sbjct: 13  RRSRSRSKSRSRKKVISWMMLLIIMLLMNEEDELLMICCNASSPIATNKQQQQQQQQESA 72

Query: 61  LVKLKPKNGNNYYYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 108
           L KLKPKNGNNYYYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP
Sbjct: 73  LFKLKPKNGNNYYYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 119

[Close]
BLAST of Cucsa.101090 vs. NCBI nr
Match: gi|700193169|gb|KGN48373.1| (hypothetical protein Csa_6G484020 [Cucumis sativus])

HSP 1 Score: 186.8 bits (473), Expect = 2.0e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1 

Query: 19  MMLLIIMLLMNEEDELLMICCNASSPIATNKQQQQQQQQESALVKLKPKNGNNYYYGHFF 78
           MMLLIIMLLMNEEDELLMICCNASSPIATNKQQQQQQQQESALVKLKPKNGNNYYYGHFF
Sbjct: 1   MMLLIIMLLMNEEDELLMICCNASSPIATNKQQQQQQQQESALVKLKPKNGNNYYYGHFF 60

Query: 79  GFLPRRIPIPASGPSRKHNDIGLRSWRSP 108
           GFLPRRIPIPASGPSRKHNDIGLRSWRSP
Sbjct: 61  GFLPRRIPIPASGPSRKHNDIGLRSWRSP 89

[Close]
BLAST of Cucsa.101090 vs. NCBI nr
Match: gi|645218654|ref|XP_008231703.1| (PREDICTED: protein IDA-LIKE 4 [Prunus mume])

HSP 1 Score: 77.0 bits (188), Expect = 2.2e-11
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 1 

Query: 63  KLKPKNGNNYYYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 108
           KLKPK  ++   GHF GFLPRRIPIPASGPSRKHNDIGLRSWRSP
Sbjct: 36  KLKPKYQHS---GHFTGFLPRRIPIPASGPSRKHNDIGLRSWRSP 77

[Close]
BLAST of Cucsa.101090 vs. NCBI nr
Match: gi|595834037|ref|XP_007206785.1| (hypothetical protein PRUPE_ppa025503mg [Prunus persica])

HSP 1 Score: 77.0 bits (188), Expect = 2.2e-11
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 1 

Query: 63  KLKPKNGNNYYYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 108
           KLKPK  ++   GHF GFLPRRIPIPASGPSRKHNDIGLRSWRSP
Sbjct: 36  KLKPKYQHS---GHFSGFLPRRIPIPASGPSRKHNDIGLRSWRSP 77

[Close]
BLAST of Cucsa.101090 vs. NCBI nr
Match: gi|731388038|ref|XP_010649464.1| (PREDICTED: protein IDA-LIKE 4-like [Vitis vinifera])

HSP 1 Score: 76.6 bits (187), Expect = 2.9e-11
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1 

Query: 57  QESALVKLKPKNGNNYYYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 108
           + S + KLKP++ N+   GHF GFLPR +PIPASGPSRKHNDIGL+SWRSP
Sbjct: 29  RSSQVFKLKPRSHNS---GHFLGFLPRALPIPASGPSRKHNDIGLQSWRSP 76

The following BLAST results are available for this feature:
BLAST of Cucsa.101090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
IDL4_ARATH6.7e-0860.00Protein IDA-LIKE 4 OS=Arabidopsis thaliana GN=IDL4 PE=2 SV=1[more]
IDL2_ARATH1.1e-0736.54Protein IDA-LIKE 2 OS=Arabidopsis thaliana GN=IDL2 PE=2 SV=1[more]
IDL3_ARATH9.6e-0732.08Protein IDA-LIKE 3 OS=Arabidopsis thaliana GN=IDL3 PE=2 SV=1[more]
BLAST of Cucsa.101090 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFQ3_CUCSA1.4e-44100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G484020 PE=4 SV=1[more]
M5W2Q5_PRUPE1.5e-1182.22Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025503mg PE=4 SV=1[more]
A0A0D2SF39_GOSRA7.6e-1175.56Uncharacterized protein OS=Gossypium raimondii GN=B456_007G064600 PE=4 SV=1[more]
A0A151TLA3_CAJCA5.0e-1071.11Protein IDA-LIKE 2 OS=Cajanus cajan GN=KK1_024188 PE=4 SV=1[more]
A0A0B2RB07_GLYSO1.4e-0965.31Protein IDA-LIKE 4 OS=Glycine soja GN=glysoja_008493 PE=4 SV=1[more]
BLAST of Cucsa.101090 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G18715.13.7e-0960.00 inflorescence deficient in abscission (IDA)-like 4[more]
AT5G64667.16.4e-0936.54 inflorescence deficient in abscission (IDA)-like 2[more]
AT5G09805.15.4e-0832.08 inflorescence deficient in abscission (IDA)-like 3[more]
BLAST of Cucsa.101090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659080869|ref|XP_008441023.1|4.7e-5499.07PREDICTED: protein IDA-LIKE 2-like [Cucumis melo][more]
gi|700193169|gb|KGN48373.1|2.0e-44100.00hypothetical protein Csa_6G484020 [Cucumis sativus][more]
gi|645218654|ref|XP_008231703.1|2.2e-1182.22PREDICTED: protein IDA-LIKE 4 [Prunus mume][more]
gi|595834037|ref|XP_007206785.1|2.2e-1182.22hypothetical protein PRUPE_ppa025503mg [Prunus persica][more]
gi|731388038|ref|XP_010649464.1|2.9e-1168.63PREDICTED: protein IDA-LIKE 4-like [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.101090.1Cucsa.101090.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33599FAMILY NOT NAMEDcoord: 2..107
score: 3.0
NoneNo IPR availablePANTHERPTHR33599:SF2PROTEIN IDA-LIKE 3-RELATEDcoord: 2..107
score: 3.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.101090Csa6G484020Cucumber (Chinese Long) v2cgycuB121
Cucsa.101090MELO3C008039Melon (DHL92) v3.5.1cgymeB132
Cucsa.101090CSPI06G26650Wild cucumber (PI 183967)cgycpiB122
Cucsa.101090CmaCh03G010820Cucurbita maxima (Rimu)cgycmaB0231
Cucsa.101090Cp4.1LG10g03510Cucurbita pepo (Zucchini)cgycpeB0211
Cucsa.101090MELO3C008039.2Melon (DHL92) v3.6.1cgymedB132
Cucsa.101090CsaV3_6G041820Cucumber (Chinese Long) v3cgycucB126
Cucsa.101090Cla97C01G014520Watermelon (97103) v2cgywmbB127
Cucsa.101090Carg10549Silver-seed gourdcarcgyB0280
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.101090Cucurbita pepo (Zucchini)cgycpeB0220
Cucsa.101090Cucurbita pepo (Zucchini)cgycpeB0224
Cucsa.101090Bottle gourd (USVL1VR-Ls)cgylsiB125
Cucsa.101090Silver-seed gourdcarcgyB0918
Cucsa.101090Watermelon (97103) v2cgywmbB129
Cucsa.101090Wax gourdcgywgoB153
Cucsa.101090Cucumber (Gy14) v1cgycgyB046
Cucsa.101090Cucurbita maxima (Rimu)cgycmaB0229
Cucsa.101090Cucurbita maxima (Rimu)cgycmaB0235
Cucsa.101090Cucurbita moschata (Rifu)cgycmoB0225
Cucsa.101090Cucurbita moschata (Rifu)cgycmoB0227
Cucsa.101090Cucurbita moschata (Rifu)cgycmoB0233
Cucsa.101090Wild cucumber (PI 183967)cgycpiB117
Cucsa.101090Cucumber (Chinese Long) v2cgycuB115
Cucsa.101090Watermelon (Charleston Gray)cgywcgB134
Cucsa.101090Watermelon (Charleston Gray)cgywcgB135
Cucsa.101090Watermelon (97103) v1cgywmB137
Cucsa.101090Watermelon (97103) v1cgywmB140