CSPI06G26650 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G26650
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 23497248 .. 23497470 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGAAGAAGATGAGTTATTGATGATTTGCTGCAATGCTTCTTCACCAATTGCTACCAACAAACAACAACAGCAACAACAACAACAAGAATCTGCGTTGGTCAAATTGAAGCCTAAAAATGGTAATAATTATTATTACGGCCATTTCTTTGGTTTCTTGCCTAGACGAATCCCCATTCCTGCCTCTGGTCCTTCAAGAAAACACAATGATATTGGCTTAA

mRNA sequence

ATGAATGAAGAAGATGAGTTATTGATGATTTGCTGCAATGCTTCTTCACCAATTGCTACCAACAAACAACAACAGCAACAACAACAACAAGAATCTGCGTTGGTCAAATTGAAGCCTAAAAATGACGAATCCCCATTCCTGCCTCTGGTCCTTCAAGAAAACACAATGATATTGGCTTAA

Coding sequence (CDS)

ATGAATGAAGAAGATGAGTTATTGATGATTTGCTGCAATGCTTCTTCACCAATTGCTACCAACAAACAACAACAGCAACAACAACAACAAGAATCTGCGTTGGTCAAATTGAAGCCTAAAAATGACGAATCCCCATTCCTGCCTCTGGTCCTTCAAGAAAACACAATGATATTGGCTTAA
Homology
[Close]
BLAST of CSPI06G26650 vs. TrEMBL
Match: A0A0A0KFQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G484020 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.5e-13
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1 

Query: 1  MNEEDELLMICCNASSPIATNKQQQQQQQQESALVKLKPKN 42
          MNEEDELLMICCNASSPIATNKQQQQQQQQESALVKLKPKN
Sbjct: 10 MNEEDELLMICCNASSPIATNKQQQQQQQQESALVKLKPKN 50

[Close]
BLAST of CSPI06G26650 vs. NCBI nr
Match: gi|700193169|gb|KGN48373.1| (hypothetical protein Csa_6G484020 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 5.0e-13
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1 

Query: 1  MNEEDELLMICCNASSPIATNKQQQQQQQQESALVKLKPKN 42
          MNEEDELLMICCNASSPIATNKQQQQQQQQESALVKLKPKN
Sbjct: 10 MNEEDELLMICCNASSPIATNKQQQQQQQQESALVKLKPKN 50

[Close]
BLAST of CSPI06G26650 vs. NCBI nr
Match: gi|659080869|ref|XP_008441023.1| (PREDICTED: protein IDA-LIKE 2-like [Cucumis melo])

HSP 1 Score: 79.7 bits (195), Expect = 1.9e-12
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1 

Query: 1  MNEEDELLMICCNASSPIATNKQQQQQQQQESALVKLKPKN 42
          MNEEDELLMICCNASSPIATNKQQQQQQQQESAL KLKPKN
Sbjct: 40 MNEEDELLMICCNASSPIATNKQQQQQQQQESALFKLKPKN 80

The following BLAST results are available for this feature:
BLAST of CSPI06G26650 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G26650 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFQ3_CUCSA3.5e-13100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G484020 PE=4 SV=1[more]
BLAST of CSPI06G26650 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G26650 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193169|gb|KGN48373.1|5.0e-13100.00hypothetical protein Csa_6G484020 [Cucumis sativus][more]
gi|659080869|ref|XP_008441023.1|1.9e-1297.56PREDICTED: protein IDA-LIKE 2-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G26650.1CSPI06G26650.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G26650MELO3C008039.2Melon (DHL92) v3.6.1cpimedB497
CSPI06G26650CsaV3_6G041820Cucumber (Chinese Long) v3cpicucB363
CSPI06G26650Cucsa.101090Cucumber (Gy14) v1cgycpiB122
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G26650Bottle gourd (USVL1VR-Ls)cpilsiB439
CSPI06G26650Cucumber (Gy14) v2cgybcpiB084
CSPI06G26650Cucumber (Gy14) v2cgybcpiB287
CSPI06G26650Silver-seed gourdcarcpiB0271
CSPI06G26650Silver-seed gourdcarcpiB0846
CSPI06G26650Cucumber (Chinese Long) v3cpicucB329
CSPI06G26650Watermelon (97103) v2cpiwmbB433
CSPI06G26650Watermelon (97103) v2cpiwmbB462
CSPI06G26650Wax gourdcpiwgoB628
CSPI06G26650Wild cucumber (PI 183967)cpicpiB086
CSPI06G26650Cucumber (Gy14) v1cgycpiB375
CSPI06G26650Cucurbita maxima (Rimu)cmacpiB633
CSPI06G26650Cucurbita maxima (Rimu)cmacpiB689
CSPI06G26650Cucurbita maxima (Rimu)cmacpiB893
CSPI06G26650Cucurbita moschata (Rifu)cmocpiB624
CSPI06G26650Cucurbita moschata (Rifu)cmocpiB681
CSPI06G26650Cucurbita moschata (Rifu)cmocpiB873
CSPI06G26650Cucumber (Chinese Long) v2cpicuB279
CSPI06G26650Cucumber (Chinese Long) v2cpicuB313
CSPI06G26650Melon (DHL92) v3.5.1cpimeB513
CSPI06G26650Watermelon (Charleston Gray)cpiwcgB453
CSPI06G26650Watermelon (Charleston Gray)cpiwcgB468
CSPI06G26650Watermelon (97103) v1cpiwmB521
CSPI06G26650Watermelon (97103) v1cpiwmB550
CSPI06G26650Cucurbita pepo (Zucchini)cpecpiB080
CSPI06G26650Cucurbita pepo (Zucchini)cpecpiB503
CSPI06G26650Cucurbita pepo (Zucchini)cpecpiB767